RNA–Protein interactions for RNA: ENST00000476139.5

TVP23B-202, Transcript of trans-golgi network vesicle protein 23 homolog B, humanhuman

TSL 1 (best) BASIC

Gene TVP23B, Length 2,989 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TVP23B-202ENST00000476139 NISCHQ9Y2I1 1504 aa35.58■■■■□ 3.29
TVP23B-202ENST00000476139 CCDC180Q9P1Z9 1646 aa30.34■■■□□ 2.45
TVP23B-202ENST00000476139 SHROOM4Q9ULL8 1493 aa30.1■■■□□ 2.41
TVP23B-202ENST00000476139 ZCCHC6Q5VYS8 1495 aaKnown RBP29.99■■■□□ 2.39
TVP23B-202ENST00000476139 DCAF8L2P0C7V8 631 aa29.75■■■□□ 2.35
TVP23B-202ENST00000476139 SUPT5HO00267 1087 aaKnown RBP29.35■■■□□ 2.29
TVP23B-202ENST00000476139 DCAF1Q9Y4B6 1507 aa29.15■■■□□ 2.26
TVP23B-202ENST00000476139 ABCC9O60706 1549 aa28.6■■■□□ 2.17
TVP23B-202ENST00000476139 MYO15BQ96JP2 1530 aa28.46■■■□□ 2.15
TVP23B-202ENST00000476139 SCRIBQ14160 1630 aa28.45■■■□□ 2.14
TVP23B-202ENST00000476139 CHIC1Q5VXU3 224 aa28.31■■■□□ 2.12
TVP23B-202ENST00000476139 NACADO15069 1562 aa28.21■■■□□ 2.11
TVP23B-202ENST00000476139 RSF1Q96T23 1441 aaPredicted RBP28.03■■■□□ 2.08
TVP23B-202ENST00000476139 RB1CC1Q8TDY2 1594 aa27.83■■■□□ 2.05
TVP23B-202ENST00000476139 CECR2Q9BXF3 1484 aa27.83■■■□□ 2.05
TVP23B-202ENST00000476139 MROH2BQ7Z745 1585 aa27.66■■■□□ 2.02
TVP23B-202ENST00000476139 LOC105371045A0A1W2PR82 267 aa27.51■■□□□ 1.99
TVP23B-202ENST00000476139 WIZO95785 1651 aa27.47■■□□□ 1.99
TVP23B-202ENST00000476139 UNC13AQ9UPW8 1703 aa27.38■■□□□ 1.97
TVP23B-202ENST00000476139 TRIM41Q8WV44 630 aa27.35■■□□□ 1.97
TVP23B-202ENST00000476139 PABPN1Q86U42 306 aaKnown RBP eCLIP27.33■■□□□ 1.97
TVP23B-202ENST00000476139 BAZ1AQ9NRL2 1556 aaPredicted RBP27.33■■□□□ 1.97
TVP23B-202ENST00000476139 SMARCA4P51532 1647 aa27.15■■□□□ 1.94
TVP23B-202ENST00000476139 FAM9AQ8IZU1 332 aaPredicted RBP27.14■■□□□ 1.93
TVP23B-202ENST00000476139 BICRAQ9NZM4 1560 aa27.13■■□□□ 1.93
TVP23B-202ENST00000476139 PCGF6Q9BYE7 350 aa27.04■■□□□ 1.92
TVP23B-202ENST00000476139 TOP2AP11388 1531 aaKnown RBP26.99■■□□□ 1.91
TVP23B-202ENST00000476139 EHMT2Q96KQ7 1210 aa26.94■■□□□ 1.9
TVP23B-202ENST00000476139 CCDC88BA6NC98 1476 aa26.94■■□□□ 1.9
TVP23B-202ENST00000476139 SMARCA2P51531 1590 aa26.85■■□□□ 1.89
TVP23B-202ENST00000476139 EIF4G1Q04637 1599 aaKnown RBP26.85■■□□□ 1.89
TVP23B-202ENST00000476139 HRCP23327 699 aa26.82■■□□□ 1.88
TVP23B-202ENST00000476139 ABCC8Q09428 1581 aa26.72■■□□□ 1.87
TVP23B-202ENST00000476139 PEG3Q9GZU2 1588 aa26.64■■□□□ 1.86
TVP23B-202ENST00000476139 ATAD2BQ9ULI0 1458 aa26.61■■□□□ 1.85
TVP23B-202ENST00000476139 TRIM26Q12899 539 aaPredicted RBP26.55■■□□□ 1.84
TVP23B-202ENST00000476139 PPARGC1BQ86YN6 1023 aaKnown RBP26.54■■□□□ 1.84
TVP23B-202ENST00000476139 BAZ1BQ9UIG0 1483 aaKnown RBP26.49■■□□□ 1.83
TVP23B-202ENST00000476139 SOGA1O94964 1423 aa26.43■■□□□ 1.82
TVP23B-202ENST00000476139 RUSC2Q8N2Y8 1516 aa26.33■■□□□ 1.8
TVP23B-202ENST00000476139 WRNQ14191 1432 aaPredicted RBP eCLIP26.32■■□□□ 1.8
TVP23B-202ENST00000476139 CSRNP3Q8WYN3 585 aa26.25■■□□□ 1.79
TVP23B-202ENST00000476139 SYNJ1O43426 1573 aa26.18■■□□□ 1.78
TVP23B-202ENST00000476139 NCAPD3P42695 1498 aa26.16■■□□□ 1.78
TVP23B-202ENST00000476139 EEA1Q15075 1411 aa26.12■■□□□ 1.77
TVP23B-202ENST00000476139 UBTFP17480 764 aaKnown RBP26.12■■□□□ 1.77
TVP23B-202ENST00000476139 CEP162Q5TB80 1403 aa26.06■■□□□ 1.76
TVP23B-202ENST00000476139 HMGXB3Q12766 1538 aa26.06■■□□□ 1.76
TVP23B-202ENST00000476139 TNIKQ9UKE5 1360 aa26.05■■□□□ 1.76
TVP23B-202ENST00000476139 GOLGA3Q08378 1498 aa25.94■■□□□ 1.74
TVP23B-202ENST00000476139 TTBK1Q5TCY1 1321 aaPredicted RBP25.94■■□□□ 1.74
TVP23B-202ENST00000476139 TOP2BQ02880 1626 aa25.88■■□□□ 1.73
TVP23B-202ENST00000476139 CEP164Q9UPV0 1460 aa25.85■■□□□ 1.73
TVP23B-202ENST00000476139 CFTRP13569 1480 aa25.84■■□□□ 1.73
TVP23B-202ENST00000476139 RAPGEF2Q9Y4G8 1499 aa25.78■■□□□ 1.72
TVP23B-202ENST00000476139 KIF21BO75037 1637 aa25.76■■□□□ 1.72
TVP23B-202ENST00000476139 CUX1P39880 1505 aa25.76■■□□□ 1.71
TVP23B-202ENST00000476139 BIVM-ERCC5R4GMW8 1640 aa25.76■■□□□ 1.71
TVP23B-202ENST00000476139 RANGAP1P46060 587 aaPredicted RBP25.76■■□□□ 1.71
TVP23B-202ENST00000476139 CC2D2AQ9P2K1 1620 aa25.71■■□□□ 1.71
TVP23B-202ENST00000476139 ZEB1P37275 1124 aaPredicted RBP25.71■■□□□ 1.71
TVP23B-202ENST00000476139 CLIP1P30622 1438 aa25.67■■□□□ 1.7
TVP23B-202ENST00000476139 CADPSQ9ULU8 1353 aa25.65■■□□□ 1.7
TVP23B-202ENST00000476139 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.64■■□□□ 1.7
TVP23B-202ENST00000476139 PRXQ9BXM0 1461 aa25.55■■□□□ 1.68
TVP23B-202ENST00000476139 KIF27Q86VH2 1401 aa25.54■■□□□ 1.68
TVP23B-202ENST00000476139 CCER1Q8TC90 406 aaPredicted RBP25.5■■□□□ 1.67
TVP23B-202ENST00000476139 VPS8Q8N3P4 1428 aa25.48■■□□□ 1.67
TVP23B-202ENST00000476139 PRDM2Q13029 1718 aa25.45■■□□□ 1.66
TVP23B-202ENST00000476139 ERICH3Q5RHP9 1530 aa25.44■■□□□ 1.66
TVP23B-202ENST00000476139 APLP2Q06481 763 aa25.4■■□□□ 1.66
TVP23B-202ENST00000476139 CUX2O14529 1486 aa25.4■■□□□ 1.66
TVP23B-202ENST00000476139 FANCD2Q9BXW9 1451 aa25.38■■□□□ 1.65
TVP23B-202ENST00000476139 NESP48681 1621 aa25.37■■□□□ 1.65
TVP23B-202ENST00000476139 FGD5Q6ZNL6 1462 aa25.37■■□□□ 1.65
TVP23B-202ENST00000476139 IGF1RP08069 1367 aa25.36■■□□□ 1.65
TVP23B-202ENST00000476139 DNAJC5BQ9UF47 199 aa25.35■■□□□ 1.65
TVP23B-202ENST00000476139 ARAP1Q96P48 1450 aa25.29■■□□□ 1.64
TVP23B-202ENST00000476139 HNRNPUL2Q1KMD3 747 aaKnown RBP25.29■■□□□ 1.64
TVP23B-202ENST00000476139 CARMIL1Q5VZK9 1371 aa25.22■■□□□ 1.63
TVP23B-202ENST00000476139 RAD54L2Q9Y4B4 1467 aa25.21■■□□□ 1.63
TVP23B-202ENST00000476139 KANK4Q5T7N3 995 aaPredicted RBP25.2■■□□□ 1.63
TVP23B-202ENST00000476139 ARHGAP35Q9NRY4 1499 aa25.17■■□□□ 1.62
TVP23B-202ENST00000476139 TOPBP1Q92547 1522 aa25.16■■□□□ 1.62
TVP23B-202ENST00000476139 POLA1P09884 1462 aaPredicted RBP25.14■■□□□ 1.61
TVP23B-202ENST00000476139 DNMBPQ6XZF7 1577 aa25.13■■□□□ 1.61
TVP23B-202ENST00000476139 ABCA10Q8WWZ4 1543 aa25.05■■□□□ 1.6
TVP23B-202ENST00000476139 LAMC3Q9Y6N6 1575 aa25.05■■□□□ 1.6
TVP23B-202ENST00000476139 URB2Q14146 1524 aaKnown RBP25.04■■□□□ 1.6
TVP23B-202ENST00000476139 P3H3Q8IVL6 736 aa25.01■■□□□ 1.59
TVP23B-202ENST00000476139 PDS5BQ9NTI5 1447 aa24.96■■□□□ 1.59
TVP23B-202ENST00000476139 TDRD9Q8NDG6 1382 aaKnown RBP24.96■■□□□ 1.59
TVP23B-202ENST00000476139 ATP1B4Q9UN42 357 aaPredicted RBP24.85■■□□□ 1.57
TVP23B-202ENST00000476139 KIF21AQ7Z4S6 1674 aa24.83■■□□□ 1.57
TVP23B-202ENST00000476139 RRBP1Q9P2E9 1410 aaKnown RBP24.83■■□□□ 1.56
TVP23B-202ENST00000476139 FHOD3Q2V2M9 1422 aa24.81■■□□□ 1.56
TVP23B-202ENST00000476139 ITGAEP38570 1179 aa24.81■■□□□ 1.56
TVP23B-202ENST00000476139 SCAF1Q9H7N4 1312 aaKnown RBP24.79■■□□□ 1.56
TVP23B-202ENST00000476139 GAPVD1Q14C86 1478 aa24.79■■□□□ 1.56
TVP23B-202ENST00000476139 DIEXFQ68CQ4 756 aaKnown RBP24.78■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms