RNA–Protein interactions for RNA: ENST00000372858.7

PABPC4-203, Transcript of poly(A) binding protein cytoplasmic 4, humanhuman

TSL 1 (best) BASIC

Gene PABPC4, Length 2,753 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PABPC4-203ENST00000372858 NISCHQ9Y2I1 1504 aa33.35■■■□□ 2.93
PABPC4-203ENST00000372858 SHROOM4Q9ULL8 1493 aa28.67■■■□□ 2.18
PABPC4-203ENST00000372858 SUPT5HO00267 1087 aaKnown RBP28.29■■■□□ 2.12
PABPC4-203ENST00000372858 ZCCHC6Q5VYS8 1495 aaKnown RBP28.23■■■□□ 2.11
PABPC4-203ENST00000372858 CCDC180Q9P1Z9 1646 aa28.21■■■□□ 2.11
PABPC4-203ENST00000372858 DCAF8L2P0C7V8 631 aa27.76■■■□□ 2.03
PABPC4-203ENST00000372858 CHIC1Q5VXU3 224 aa27.63■■■□□ 2.01
PABPC4-203ENST00000372858 HRCP23327 699 aa27.57■■■□□ 2
PABPC4-203ENST00000372858 MYO15BQ96JP2 1530 aa27.53■■■□□ 2
PABPC4-203ENST00000372858 DCAF1Q9Y4B6 1507 aa27.34■■□□□ 1.97
PABPC4-203ENST00000372858 PCGF6Q9BYE7 350 aa27.28■■□□□ 1.96
PABPC4-203ENST00000372858 PPARGC1BQ86YN6 1023 aaKnown RBP26.92■■□□□ 1.9
PABPC4-203ENST00000372858 LOC105371045A0A1W2PR82 267 aa26.86■■□□□ 1.89
PABPC4-203ENST00000372858 ABCC9O60706 1549 aa26.67■■□□□ 1.86
PABPC4-203ENST00000372858 TRIM26Q12899 539 aaPredicted RBP26.64■■□□□ 1.86
PABPC4-203ENST00000372858 SCRIBQ14160 1630 aa26.51■■□□□ 1.83
PABPC4-203ENST00000372858 RSF1Q96T23 1441 aaPredicted RBP26.5■■□□□ 1.83
PABPC4-203ENST00000372858 TRIM41Q8WV44 630 aa26.35■■□□□ 1.81
PABPC4-203ENST00000372858 ZEB1P37275 1124 aaPredicted RBP26.29■■□□□ 1.8
PABPC4-203ENST00000372858 RB1CC1Q8TDY2 1594 aa26.24■■□□□ 1.79
PABPC4-203ENST00000372858 FAM9AQ8IZU1 332 aaPredicted RBP26.13■■□□□ 1.77
PABPC4-203ENST00000372858 NACADO15069 1562 aa26.07■■□□□ 1.76
PABPC4-203ENST00000372858 CECR2Q9BXF3 1484 aa25.99■■□□□ 1.75
PABPC4-203ENST00000372858 MROH2BQ7Z745 1585 aa25.93■■□□□ 1.74
PABPC4-203ENST00000372858 EHMT2Q96KQ7 1210 aa25.9■■□□□ 1.74
PABPC4-203ENST00000372858 WIZO95785 1651 aa25.8■■□□□ 1.72
PABPC4-203ENST00000372858 PELP1Q8IZL8 1130 aaKnown RBP25.76■■□□□ 1.71
PABPC4-203ENST00000372858 SCAF1Q9H7N4 1312 aaKnown RBP25.67■■□□□ 1.7
PABPC4-203ENST00000372858 BAZ1AQ9NRL2 1556 aaPredicted RBP25.65■■□□□ 1.7
PABPC4-203ENST00000372858 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.49■■□□□ 1.67
PABPC4-203ENST00000372858 EIF4G1Q04637 1599 aaKnown RBP25.48■■□□□ 1.67
PABPC4-203ENST00000372858 CCER1Q8TC90 406 aaPredicted RBP25.48■■□□□ 1.67
PABPC4-203ENST00000372858 TOP2AP11388 1531 aaKnown RBP25.4■■□□□ 1.66
PABPC4-203ENST00000372858 SMARCA4P51532 1647 aa25.33■■□□□ 1.65
PABPC4-203ENST00000372858 CCDC88BA6NC98 1476 aa25.32■■□□□ 1.64
PABPC4-203ENST00000372858 ABCC8Q09428 1581 aa25.32■■□□□ 1.64
PABPC4-203ENST00000372858 ACIN1Q9UKV3 1341 aaKnown RBP25.31■■□□□ 1.64
PABPC4-203ENST00000372858 SMARCA2P51531 1590 aa25.26■■□□□ 1.63
PABPC4-203ENST00000372858 NEUROD1Q13562 356 aa25.22■■□□□ 1.63
PABPC4-203ENST00000372858 DIEXFQ68CQ4 756 aaKnown RBP25.22■■□□□ 1.63
PABPC4-203ENST00000372858 WRNQ14191 1432 aaPredicted RBP eCLIP25.2■■□□□ 1.62
PABPC4-203ENST00000372858 CEP162Q5TB80 1403 aa25.18■■□□□ 1.62
PABPC4-203ENST00000372858 SOGA1O94964 1423 aa25.16■■□□□ 1.62
PABPC4-203ENST00000372858 UNC13AQ9UPW8 1703 aa25.14■■□□□ 1.62
PABPC4-203ENST00000372858 TTBK1Q5TCY1 1321 aaPredicted RBP25.14■■□□□ 1.61
PABPC4-203ENST00000372858 TNIKQ9UKE5 1360 aa25.14■■□□□ 1.61
PABPC4-203ENST00000372858 CENPBP07199 599 aaPredicted RBP25.13■■□□□ 1.61
PABPC4-203ENST00000372858 CSRNP3Q8WYN3 585 aa25.12■■□□□ 1.61
PABPC4-203ENST00000372858 EEA1Q15075 1411 aa25.12■■□□□ 1.61
PABPC4-203ENST00000372858 UBTFP17480 764 aaKnown RBP25.09■■□□□ 1.61
PABPC4-203ENST00000372858 GTF3C3Q9Y5Q9 886 aa25.04■■□□□ 1.6
PABPC4-203ENST00000372858 RUSC2Q8N2Y8 1516 aa25■■□□□ 1.59
PABPC4-203ENST00000372858 PABPN1Q86U42 306 aaKnown RBP eCLIP24.96■■□□□ 1.59
PABPC4-203ENST00000372858 GOLGA3Q08378 1498 aa24.94■■□□□ 1.58
PABPC4-203ENST00000372858 ZNF316A6NFI3 1004 aaPredicted RBP24.91■■□□□ 1.58
PABPC4-203ENST00000372858 BICRAQ9NZM4 1560 aa24.83■■□□□ 1.57
PABPC4-203ENST00000372858 PEG3Q9GZU2 1588 aa24.81■■□□□ 1.56
PABPC4-203ENST00000372858 CEP164Q9UPV0 1460 aa24.78■■□□□ 1.56
PABPC4-203ENST00000372858 SYNJ1O43426 1573 aa24.72■■□□□ 1.55
PABPC4-203ENST00000372858 KIF21BO75037 1637 aa24.69■■□□□ 1.54
PABPC4-203ENST00000372858 CLIP1P30622 1438 aa24.69■■□□□ 1.54
PABPC4-203ENST00000372858 HNRNPUL2Q1KMD3 747 aaKnown RBP24.67■■□□□ 1.54
PABPC4-203ENST00000372858 YTHDC1Q96MU7 727 aaKnown RBP24.66■■□□□ 1.54
PABPC4-203ENST00000372858 ATAD2BQ9ULI0 1458 aa24.65■■□□□ 1.54
PABPC4-203ENST00000372858 APLP2Q06481 763 aa24.64■■□□□ 1.54
PABPC4-203ENST00000372858 BAZ1BQ9UIG0 1483 aaKnown RBP24.63■■□□□ 1.53
PABPC4-203ENST00000372858 MYT1Q01538 1121 aa24.6■■□□□ 1.53
PABPC4-203ENST00000372858 MIER1Q8N108 512 aa24.6■■□□□ 1.53
PABPC4-203ENST00000372858 VPS8Q8N3P4 1428 aa24.59■■□□□ 1.53
PABPC4-203ENST00000372858 RAPGEF2Q9Y4G8 1499 aa24.53■■□□□ 1.52
PABPC4-203ENST00000372858 RANGAP1P46060 587 aaPredicted RBP24.51■■□□□ 1.51
PABPC4-203ENST00000372858 TOP2BQ02880 1626 aa24.41■■□□□ 1.5
PABPC4-203ENST00000372858 BIVM-ERCC5R4GMW8 1640 aa24.29■■□□□ 1.48
PABPC4-203ENST00000372858 CLSPNQ9HAW4 1339 aa24.28■■□□□ 1.48
PABPC4-203ENST00000372858 ERICH3Q5RHP9 1530 aa24.28■■□□□ 1.48
PABPC4-203ENST00000372858 PRXQ9BXM0 1461 aa24.25■■□□□ 1.47
PABPC4-203ENST00000372858 DHX57Q6P158 1386 aaKnown RBP24.19■■□□□ 1.46
PABPC4-203ENST00000372858 ARAP1Q96P48 1450 aa24.18■■□□□ 1.46
PABPC4-203ENST00000372858 KIF27Q86VH2 1401 aa24.16■■□□□ 1.46
PABPC4-203ENST00000372858 KANK4Q5T7N3 995 aaPredicted RBP24.15■■□□□ 1.46
PABPC4-203ENST00000372858 NCAPD3P42695 1498 aa24.14■■□□□ 1.45
PABPC4-203ENST00000372858 HMGXB3Q12766 1538 aa24.12■■□□□ 1.45
PABPC4-203ENST00000372858 CUX1P39880 1505 aa24.12■■□□□ 1.45
PABPC4-203ENST00000372858 RRBP1Q9P2E9 1410 aaKnown RBP24.04■■□□□ 1.44
PABPC4-203ENST00000372858 CFTRP13569 1480 aa24.01■■□□□ 1.43
PABPC4-203ENST00000372858 SUPT16HQ9Y5B9 1047 aaKnown RBP23.99■■□□□ 1.43
PABPC4-203ENST00000372858 CCNB3Q8WWL7 1395 aa23.97■■□□□ 1.43
PABPC4-203ENST00000372858 ARHGAP35Q9NRY4 1499 aa23.96■■□□□ 1.43
PABPC4-203ENST00000372858 ITGAEP38570 1179 aa23.92■■□□□ 1.42
PABPC4-203ENST00000372858 CUX2O14529 1486 aa23.9■■□□□ 1.42
PABPC4-203ENST00000372858 IGF1RP08069 1367 aa23.84■■□□□ 1.41
PABPC4-203ENST00000372858 CARMIL1Q5VZK9 1371 aa23.77■■□□□ 1.4
PABPC4-203ENST00000372858 RAB3GAP2Q9H2M9 1393 aa23.77■■□□□ 1.4
PABPC4-203ENST00000372858 PRDM2Q13029 1718 aa23.76■■□□□ 1.39
PABPC4-203ENST00000372858 TIAM1Q13009 1591 aa23.74■■□□□ 1.39
PABPC4-203ENST00000372858 MAP3K1Q13233 1512 aa23.74■■□□□ 1.39
PABPC4-203ENST00000372858 CADPSQ9ULU8 1353 aa23.73■■□□□ 1.39
PABPC4-203ENST00000372858 TSHZ2Q9NRE2 1034 aa23.72■■□□□ 1.39
PABPC4-203ENST00000372858 KCNH8Q96L42 1107 aa23.7■■□□□ 1.38
PABPC4-203ENST00000372858 FGD5Q6ZNL6 1462 aa23.69■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms