RNA–Protein interactions for RNA: ENST00000394991.7

SNCA-205, Transcript of synuclein alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNCA, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-205ENST00000394991 NISCHQ9Y2I1 1504 aa40.54■■■■■ 4.08
SNCA-205ENST00000394991 ABCC9O60706 1549 aa36.94■■■■□ 3.5
SNCA-205ENST00000394991 CCDC180Q9P1Z9 1646 aa36.62■■■■□ 3.45
SNCA-205ENST00000394991 DNAJC5BQ9UF47 199 aa34.99■■■■□ 3.19
SNCA-205ENST00000394991 RB1CC1Q8TDY2 1594 aa34.98■■■■□ 3.19
SNCA-205ENST00000394991 NACADO15069 1562 aa34.64■■■■□ 3.14
SNCA-205ENST00000394991 UNC13AQ9UPW8 1703 aa34.35■■■■□ 3.09
SNCA-205ENST00000394991 PABPN1Q86U42 306 aaKnown RBP eCLIP34.27■■■■□ 3.08
SNCA-205ENST00000394991 DCAF8L2P0C7V8 631 aa34.24■■■■□ 3.07
SNCA-205ENST00000394991 BICRAQ9NZM4 1560 aa34.06■■■■□ 3.04
SNCA-205ENST00000394991 MYO15BQ96JP2 1530 aa34.02■■■■□ 3.04
SNCA-205ENST00000394991 ZCCHC6Q5VYS8 1495 aaKnown RBP33.54■■■□□ 2.96
SNCA-205ENST00000394991 SHROOM4Q9ULL8 1493 aa33.46■■■□□ 2.95
SNCA-205ENST00000394991 DCAF1Q9Y4B6 1507 aa33.46■■■□□ 2.95
SNCA-205ENST00000394991 CC2D2AQ9P2K1 1620 aa33.39■■■□□ 2.93
SNCA-205ENST00000394991 SCRIBQ14160 1630 aa33.32■■■□□ 2.92
SNCA-205ENST00000394991 CECR2Q9BXF3 1484 aa33.3■■■□□ 2.92
SNCA-205ENST00000394991 EIF4G1Q04637 1599 aaKnown RBP33.21■■■□□ 2.91
SNCA-205ENST00000394991 DNAJC5Q9H3Z4 198 aa32.36■■■□□ 2.77
SNCA-205ENST00000394991 CUX2O14529 1486 aa31.97■■■□□ 2.71
SNCA-205ENST00000394991 NCAPD3P42695 1498 aa31.96■■■□□ 2.71
SNCA-205ENST00000394991 ERCC6Q03468 1493 aa31.87■■■□□ 2.69
SNCA-205ENST00000394991 ATAD2BQ9ULI0 1458 aa31.84■■■□□ 2.69
SNCA-205ENST00000394991 SMARCA4P51532 1647 aa31.75■■■□□ 2.67
SNCA-205ENST00000394991 HMGXB3Q12766 1538 aa31.73■■■□□ 2.67
SNCA-205ENST00000394991 SMARCA2P51531 1590 aa31.71■■■□□ 2.67
SNCA-205ENST00000394991 NESP48681 1621 aa31.65■■■□□ 2.66
SNCA-205ENST00000394991 BAZ1AQ9NRL2 1556 aaPredicted RBP31.48■■■□□ 2.63
SNCA-205ENST00000394991 BAZ1BQ9UIG0 1483 aaKnown RBP31.48■■■□□ 2.63
SNCA-205ENST00000394991 THOC2Q8NI27 1593 aaKnown RBP31.46■■■□□ 2.63
SNCA-205ENST00000394991 PEG3Q9GZU2 1588 aa31.43■■■□□ 2.62
SNCA-205ENST00000394991 LAMC3Q9Y6N6 1575 aa31.34■■■□□ 2.61
SNCA-205ENST00000394991 KIF21AQ7Z4S6 1674 aa31.29■■■□□ 2.6
SNCA-205ENST00000394991 MROH2BQ7Z745 1585 aa31.26■■■□□ 2.59
SNCA-205ENST00000394991 PDS5BQ9NTI5 1447 aa31.09■■■□□ 2.57
SNCA-205ENST00000394991 CADPSQ9ULU8 1353 aa30.94■■■□□ 2.54
SNCA-205ENST00000394991 MRC2Q9UBG0 1479 aa30.91■■■□□ 2.54
SNCA-205ENST00000394991 WIZO95785 1651 aa30.9■■■□□ 2.54
SNCA-205ENST00000394991 WDR62O43379 1518 aa30.88■■■□□ 2.53
SNCA-205ENST00000394991 TRIM41Q8WV44 630 aa30.77■■■□□ 2.52
SNCA-205ENST00000394991 CEP164Q9UPV0 1460 aa30.7■■■□□ 2.51
SNCA-205ENST00000394991 FANCD2Q9BXW9 1451 aa30.63■■■□□ 2.49
SNCA-205ENST00000394991 CFTRP13569 1480 aa30.55■■■□□ 2.48
SNCA-205ENST00000394991 URB2Q14146 1524 aaKnown RBP30.45■■■□□ 2.47
SNCA-205ENST00000394991 TOP2AP11388 1531 aaKnown RBP30.44■■■□□ 2.46
SNCA-205ENST00000394991 RSF1Q96T23 1441 aaPredicted RBP30.42■■■□□ 2.46
SNCA-205ENST00000394991 OSCARQ8IYS5 282 aa30.36■■■□□ 2.45
SNCA-205ENST00000394991 PRDM2Q13029 1718 aa30.35■■■□□ 2.45
SNCA-205ENST00000394991 RIMBP3CA6NJZ7 1639 aa30.18■■■□□ 2.42
SNCA-205ENST00000394991 RIMBP3BA6NNM3 1639 aa30.18■■■□□ 2.42
SNCA-205ENST00000394991 RIMBP3Q9UFD9 1639 aa30.18■■■□□ 2.42
SNCA-205ENST00000394991 ZNF608Q9ULD9 1512 aaPredicted RBP30.13■■■□□ 2.41
SNCA-205ENST00000394991 IFT140Q96RY7 1462 aa30.09■■■□□ 2.41
SNCA-205ENST00000394991 CCDC88BA6NC98 1476 aa30.07■■■□□ 2.4
SNCA-205ENST00000394991 TOPBP1Q92547 1522 aa30.03■■■□□ 2.4
SNCA-205ENST00000394991 ARHGEF11O15085 1522 aa30■■■□□ 2.39
SNCA-205ENST00000394991 EIF4G3O43432 1585 aaKnown RBP29.98■■■□□ 2.39
SNCA-205ENST00000394991 DNMBPQ6XZF7 1577 aa29.9■■■□□ 2.38
SNCA-205ENST00000394991 CHD1O14646 1710 aa29.88■■■□□ 2.37
SNCA-205ENST00000394991 ABCC8Q09428 1581 aa29.87■■■□□ 2.37
SNCA-205ENST00000394991 TARBP1Q13395 1621 aaKnown RBP29.85■■■□□ 2.37
SNCA-205ENST00000394991 AQRO60306 1485 aaKnown RBP eCLIP29.77■■■□□ 2.36
SNCA-205ENST00000394991 POLA1P09884 1462 aaPredicted RBP29.7■■■□□ 2.35
SNCA-205ENST00000394991 CYB5RLQ6IPT4 315 aa29.7■■■□□ 2.35
SNCA-205ENST00000394991 ARAP1Q96P48 1450 aa29.69■■■□□ 2.34
SNCA-205ENST00000394991 RAD54L2Q9Y4B4 1467 aa29.6■■■□□ 2.33
SNCA-205ENST00000394991 FBLN2P98095 1184 aa29.57■■■□□ 2.32
SNCA-205ENST00000394991 TDRD9Q8NDG6 1382 aaKnown RBP29.51■■■□□ 2.31
SNCA-205ENST00000394991 SOGA1O94964 1423 aa29.5■■■□□ 2.31
SNCA-205ENST00000394991 CLASP1Q7Z460 1538 aa29.48■■■□□ 2.31
SNCA-205ENST00000394991 SNAPC4Q5SXM2 1469 aa29.48■■■□□ 2.31
SNCA-205ENST00000394991 TRHP20396 242 aaPredicted RBP29.47■■■□□ 2.31
SNCA-205ENST00000394991 WDR97A6NE52 1622 aa29.46■■■□□ 2.31
SNCA-205ENST00000394991 FGD5Q6ZNL6 1462 aa29.46■■■□□ 2.31
SNCA-205ENST00000394991 CUX1P39880 1505 aa29.4■■■□□ 2.3
SNCA-205ENST00000394991 SYNJ1O43426 1573 aa29.38■■■□□ 2.29
SNCA-205ENST00000394991 MAGI1Q96QZ7 1491 aaPredicted RBP29.36■■■□□ 2.29
SNCA-205ENST00000394991 GRIN2BQ13224 1484 aa29.31■■■□□ 2.28
SNCA-205ENST00000394991 PBRM1Q86U86 1689 aa29.29■■■□□ 2.28
SNCA-205ENST00000394991 CHMP7Q8WUX9 453 aaPredicted RBP29.28■■■□□ 2.28
SNCA-205ENST00000394991 SYNJ2O15056 1496 aa29.27■■■□□ 2.28
SNCA-205ENST00000394991 GAPVD1Q14C86 1478 aa29.16■■■□□ 2.26
SNCA-205ENST00000394991 ABCA5Q8WWZ7 1642 aa29.15■■■□□ 2.26
SNCA-205ENST00000394991 ABCA10Q8WWZ4 1543 aa29.09■■■□□ 2.25
SNCA-205ENST00000394991 ERCC6L2Q5T890 1561 aa29.01■■■□□ 2.24
SNCA-205ENST00000394991 GRIN2AQ12879 1464 aa28.96■■■□□ 2.23
SNCA-205ENST00000394991 ADAMTS12P58397 1594 aa28.95■■■□□ 2.22
SNCA-205ENST00000394991 CEP170Q5SW79 1584 aa28.92■■■□□ 2.22
SNCA-205ENST00000394991 NUP160Q12769 1436 aa28.88■■■□□ 2.21
SNCA-205ENST00000394991 AEBP2Q6ZN18 517 aaPredicted RBP28.88■■■□□ 2.21
SNCA-205ENST00000394991 SHROOM2Q13796 1616 aa28.86■■■□□ 2.21
SNCA-205ENST00000394991 BIVM-ERCC5R4GMW8 1640 aa28.86■■■□□ 2.21
SNCA-205ENST00000394991 WRNQ14191 1432 aaPredicted RBP eCLIP28.83■■■□□ 2.21
SNCA-205ENST00000394991 TOP2BQ02880 1626 aa28.81■■■□□ 2.2
SNCA-205ENST00000394991 FHAD1B1AJZ9 1412 aa28.76■■■□□ 2.19
SNCA-205ENST00000394991 KIF13AQ9H1H9 1805 aa28.74■■■□□ 2.19
SNCA-205ENST00000394991 ERICH3Q5RHP9 1530 aa28.72■■■□□ 2.19
SNCA-205ENST00000394991 SUPT5HO00267 1087 aaKnown RBP28.7■■■□□ 2.18
SNCA-205ENST00000394991 PRG4Q92954 1404 aaPredicted RBP28.6■■■□□ 2.17
SNCA-205ENST00000394991 RUSC2Q8N2Y8 1516 aa28.56■■■□□ 2.16
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms