RNA–Protein interactions for RNA: ENST00000611068.1

RTN1-209, Transcript of reticulon 1, humanhuman

TSL 5 BASIC

Gene RTN1, Length 2,647 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN1-209ENST00000611068 NISCHQ9Y2I1 1504 aa34.39■■■■□ 3.1
RTN1-209ENST00000611068 CCDC180Q9P1Z9 1646 aa29.59■■■□□ 2.33
RTN1-209ENST00000611068 DCAF8L2P0C7V8 631 aa29.13■■■□□ 2.25
RTN1-209ENST00000611068 SHROOM4Q9ULL8 1493 aa28.87■■■□□ 2.21
RTN1-209ENST00000611068 ZCCHC6Q5VYS8 1495 aaKnown RBP28.86■■■□□ 2.21
RTN1-209ENST00000611068 ABCC9O60706 1549 aa28.5■■■□□ 2.15
RTN1-209ENST00000611068 DCAF1Q9Y4B6 1507 aa28.1■■■□□ 2.09
RTN1-209ENST00000611068 SUPT5HO00267 1087 aaKnown RBP27.85■■■□□ 2.05
RTN1-209ENST00000611068 SCRIBQ14160 1630 aa27.76■■■□□ 2.03
RTN1-209ENST00000611068 NACADO15069 1562 aa27.64■■■□□ 2.02
RTN1-209ENST00000611068 MYO15BQ96JP2 1530 aa27.63■■■□□ 2.01
RTN1-209ENST00000611068 RB1CC1Q8TDY2 1594 aa27.45■■□□□ 1.98
RTN1-209ENST00000611068 PABPN1Q86U42 306 aaKnown RBP eCLIP27.13■■□□□ 1.93
RTN1-209ENST00000611068 CECR2Q9BXF3 1484 aa26.98■■□□□ 1.91
RTN1-209ENST00000611068 UNC13AQ9UPW8 1703 aa26.98■■□□□ 1.91
RTN1-209ENST00000611068 RSF1Q96T23 1441 aaPredicted RBP26.88■■□□□ 1.89
RTN1-209ENST00000611068 MROH2BQ7Z745 1585 aa26.74■■□□□ 1.87
RTN1-209ENST00000611068 BICRAQ9NZM4 1560 aa26.72■■□□□ 1.87
RTN1-209ENST00000611068 PELP1Q8IZL8 1130 aaKnown RBP26.68■■□□□ 1.86
RTN1-209ENST00000611068 HRCP23327 699 aa26.58■■□□□ 1.85
RTN1-209ENST00000611068 WIZO95785 1651 aa26.55■■□□□ 1.84
RTN1-209ENST00000611068 BAZ1AQ9NRL2 1556 aaPredicted RBP26.47■■□□□ 1.83
RTN1-209ENST00000611068 CHIC1Q5VXU3 224 aa26.47■■□□□ 1.83
RTN1-209ENST00000611068 SMARCA4P51532 1647 aa26.38■■□□□ 1.81
RTN1-209ENST00000611068 PPARGC1BQ86YN6 1023 aaKnown RBP26.17■■□□□ 1.78
RTN1-209ENST00000611068 TOP2AP11388 1531 aaKnown RBP26.05■■□□□ 1.76
RTN1-209ENST00000611068 CCDC88BA6NC98 1476 aa25.99■■□□□ 1.75
RTN1-209ENST00000611068 ATAD2BQ9ULI0 1458 aa25.98■■□□□ 1.75
RTN1-209ENST00000611068 TRIM41Q8WV44 630 aa25.94■■□□□ 1.74
RTN1-209ENST00000611068 EIF4G1Q04637 1599 aaKnown RBP25.92■■□□□ 1.74
RTN1-209ENST00000611068 SMARCA2P51531 1590 aa25.9■■□□□ 1.74
RTN1-209ENST00000611068 BAZ1BQ9UIG0 1483 aaKnown RBP25.88■■□□□ 1.73
RTN1-209ENST00000611068 PEG3Q9GZU2 1588 aa25.84■■□□□ 1.73
RTN1-209ENST00000611068 FAM9AQ8IZU1 332 aaPredicted RBP25.82■■□□□ 1.72
RTN1-209ENST00000611068 MYT1Q01538 1121 aa25.8■■□□□ 1.72
RTN1-209ENST00000611068 LOC105371045A0A1W2PR82 267 aa25.77■■□□□ 1.72
RTN1-209ENST00000611068 EHMT2Q96KQ7 1210 aa25.73■■□□□ 1.71
RTN1-209ENST00000611068 PCGF6Q9BYE7 350 aa25.7■■□□□ 1.7
RTN1-209ENST00000611068 SCAF1Q9H7N4 1312 aaKnown RBP25.69■■□□□ 1.7
RTN1-209ENST00000611068 ABCC8Q09428 1581 aa25.65■■□□□ 1.7
RTN1-209ENST00000611068 NCAPD3P42695 1498 aa25.61■■□□□ 1.69
RTN1-209ENST00000611068 CC2D2AQ9P2K1 1620 aa25.56■■□□□ 1.68
RTN1-209ENST00000611068 HMGXB3Q12766 1538 aa25.47■■□□□ 1.67
RTN1-209ENST00000611068 DNAJC5BQ9UF47 199 aa25.4■■□□□ 1.66
RTN1-209ENST00000611068 WRNQ14191 1432 aaPredicted RBP eCLIP25.29■■□□□ 1.64
RTN1-209ENST00000611068 SOGA1O94964 1423 aa25.22■■□□□ 1.63
RTN1-209ENST00000611068 SYNJ1O43426 1573 aa25.18■■□□□ 1.62
RTN1-209ENST00000611068 RUSC2Q8N2Y8 1516 aa25.17■■□□□ 1.62
RTN1-209ENST00000611068 CFTRP13569 1480 aa25.15■■□□□ 1.62
RTN1-209ENST00000611068 CADPSQ9ULU8 1353 aa25.11■■□□□ 1.61
RTN1-209ENST00000611068 NESP48681 1621 aa25.07■■□□□ 1.6
RTN1-209ENST00000611068 CSRNP3Q8WYN3 585 aa24.99■■□□□ 1.59
RTN1-209ENST00000611068 CUX1P39880 1505 aa24.95■■□□□ 1.58
RTN1-209ENST00000611068 TOP2BQ02880 1626 aa24.9■■□□□ 1.58
RTN1-209ENST00000611068 UBTFP17480 764 aaKnown RBP24.9■■□□□ 1.58
RTN1-209ENST00000611068 FANCD2Q9BXW9 1451 aa24.87■■□□□ 1.57
RTN1-209ENST00000611068 RANGAP1P46060 587 aaPredicted RBP24.82■■□□□ 1.56
RTN1-209ENST00000611068 BIVM-ERCC5R4GMW8 1640 aa24.79■■□□□ 1.56
RTN1-209ENST00000611068 PRDM2Q13029 1718 aa24.77■■□□□ 1.56
RTN1-209ENST00000611068 EEA1Q15075 1411 aa24.75■■□□□ 1.55
RTN1-209ENST00000611068 ACIN1Q9UKV3 1341 aaKnown RBP24.72■■□□□ 1.55
RTN1-209ENST00000611068 NEUROD1Q13562 356 aa24.68■■□□□ 1.54
RTN1-209ENST00000611068 FGD5Q6ZNL6 1462 aa24.67■■□□□ 1.54
RTN1-209ENST00000611068 LAMC3Q9Y6N6 1575 aa24.65■■□□□ 1.54
RTN1-209ENST00000611068 CEP164Q9UPV0 1460 aa24.64■■□□□ 1.54
RTN1-209ENST00000611068 RAPGEF2Q9Y4G8 1499 aa24.62■■□□□ 1.53
RTN1-209ENST00000611068 GOLGA3Q08378 1498 aa24.61■■□□□ 1.53
RTN1-209ENST00000611068 RAD54L2Q9Y4B4 1467 aa24.61■■□□□ 1.53
RTN1-209ENST00000611068 CUX2O14529 1486 aa24.61■■□□□ 1.53
RTN1-209ENST00000611068 GTF3C3Q9Y5Q9 886 aa24.61■■□□□ 1.53
RTN1-209ENST00000611068 TTBK1Q5TCY1 1321 aaPredicted RBP24.6■■□□□ 1.53
RTN1-209ENST00000611068 PDS5BQ9NTI5 1447 aa24.6■■□□□ 1.53
RTN1-209ENST00000611068 CEP162Q5TB80 1403 aa24.59■■□□□ 1.53
RTN1-209ENST00000611068 KIF27Q86VH2 1401 aa24.59■■□□□ 1.53
RTN1-209ENST00000611068 TNIKQ9UKE5 1360 aa24.58■■□□□ 1.53
RTN1-209ENST00000611068 TOPBP1Q92547 1522 aa24.58■■□□□ 1.52
RTN1-209ENST00000611068 URB2Q14146 1524 aaKnown RBP24.56■■□□□ 1.52
RTN1-209ENST00000611068 KIF21AQ7Z4S6 1674 aa24.54■■□□□ 1.52
RTN1-209ENST00000611068 TRIM26Q12899 539 aaPredicted RBP24.53■■□□□ 1.52
RTN1-209ENST00000611068 DNMBPQ6XZF7 1577 aa24.51■■□□□ 1.51
RTN1-209ENST00000611068 POLA1P09884 1462 aaPredicted RBP24.51■■□□□ 1.51
RTN1-209ENST00000611068 ZEB1P37275 1124 aaPredicted RBP24.49■■□□□ 1.51
RTN1-209ENST00000611068 KIF21BO75037 1637 aa24.47■■□□□ 1.51
RTN1-209ENST00000611068 IGF1RP08069 1367 aa24.45■■□□□ 1.5
RTN1-209ENST00000611068 TDRD9Q8NDG6 1382 aaKnown RBP24.42■■□□□ 1.5
RTN1-209ENST00000611068 PRXQ9BXM0 1461 aa24.41■■□□□ 1.5
RTN1-209ENST00000611068 CLIP1P30622 1438 aa24.35■■□□□ 1.49
RTN1-209ENST00000611068 CARMIL1Q5VZK9 1371 aa24.34■■□□□ 1.49
RTN1-209ENST00000611068 ERCC6Q03468 1493 aa24.33■■□□□ 1.48
RTN1-209ENST00000611068 BCL11AQ9H165 835 aa24.32■■□□□ 1.48
RTN1-209ENST00000611068 ABCA10Q8WWZ4 1543 aa24.3■■□□□ 1.48
RTN1-209ENST00000611068 MRC2Q9UBG0 1479 aa24.26■■□□□ 1.47
RTN1-209ENST00000611068 ERICH3Q5RHP9 1530 aa24.24■■□□□ 1.47
RTN1-209ENST00000611068 AQRO60306 1485 aaKnown RBP eCLIP24.2■■□□□ 1.46
RTN1-209ENST00000611068 P3H3Q8IVL6 736 aa24.19■■□□□ 1.46
RTN1-209ENST00000611068 CENPBP07199 599 aaPredicted RBP24.17■■□□□ 1.46
RTN1-209ENST00000611068 GAPVD1Q14C86 1478 aa24.17■■□□□ 1.46
RTN1-209ENST00000611068 TARBP1Q13395 1621 aaKnown RBP24.11■■□□□ 1.45
RTN1-209ENST00000611068 ZNF608Q9ULD9 1512 aaPredicted RBP24.1■■□□□ 1.45
RTN1-209ENST00000611068 WDR97A6NE52 1622 aa24.1■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms