Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC14.78□□□□□ -0.04
MSX1P28360 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC14.78□□□□□ -0.04
MSX1P28360 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
MSX1P28360 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC14.78□□□□□ -0.04
MSX1P28360 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
MSX1P28360 HFE2-206ENST00000634927 506 ntTSL 4 BASIC14.78□□□□□ -0.04
MSX1P28360 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
MSX1P28360 PCDHB19P-201ENST00000570871 2371 ntBASIC14.78□□□□□ -0.04
MSX1P28360 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
MSX1P28360 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
MSX1P28360 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
MSX1P28360 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
MSX1P28360 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
MSX1P28360 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
MSX1P28360 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
MSX1P28360 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
MSX1P28360 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC14.78□□□□□ -0.04
MSX1P28360 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC14.78□□□□□ -0.04
MSX1P28360 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC14.78□□□□□ -0.04
MSX1P28360 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
MSX1P28360 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
MSX1P28360 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
MSX1P28360 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC14.78□□□□□ -0.04
MSX1P28360 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
MSX1P28360 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
MSX1P28360 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
MSX1P28360 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
MSX1P28360 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC14.77□□□□□ -0.04
MSX1P28360 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
MSX1P28360 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC14.77□□□□□ -0.04
MSX1P28360 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC14.77□□□□□ -0.04
MSX1P28360 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC14.77□□□□□ -0.04
MSX1P28360 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
MSX1P28360 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
MSX1P28360 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC14.77□□□□□ -0.04
MSX1P28360 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
MSX1P28360 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
MSX1P28360 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
MSX1P28360 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
MSX1P28360 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC14.77□□□□□ -0.04
MSX1P28360 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
MSX1P28360 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC14.77□□□□□ -0.05
MSX1P28360 EDF1-203ENST00000371649 790 ntTSL 2 BASIC14.77□□□□□ -0.05
MSX1P28360 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
MSX1P28360 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC14.77□□□□□ -0.05
MSX1P28360 AC069120.2-201ENST00000524091 540 ntBASIC14.77□□□□□ -0.05
MSX1P28360 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC14.77□□□□□ -0.05
MSX1P28360 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC14.77□□□□□ -0.05
MSX1P28360 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC14.77□□□□□ -0.05
MSX1P28360 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC14.77□□□□□ -0.05
MSX1P28360 AC008761.3-201ENST00000624803 892 ntBASIC14.77□□□□□ -0.05
MSX1P28360 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
MSX1P28360 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC14.77□□□□□ -0.05
MSX1P28360 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
MSX1P28360 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
MSX1P28360 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC14.77□□□□□ -0.05
MSX1P28360 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC14.77□□□□□ -0.05
MSX1P28360 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
MSX1P28360 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC14.77□□□□□ -0.05
MSX1P28360 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
MSX1P28360 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
MSX1P28360 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
MSX1P28360 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
MSX1P28360 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC14.77□□□□□ -0.05
MSX1P28360 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC14.77□□□□□ -0.05
MSX1P28360 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
MSX1P28360 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
MSX1P28360 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
MSX1P28360 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
MSX1P28360 AC092364.2-201ENST00000596710 2692 ntBASIC14.77□□□□□ -0.05
MSX1P28360 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
MSX1P28360 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC14.77□□□□□ -0.05
MSX1P28360 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC14.76□□□□□ -0.05
MSX1P28360 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
MSX1P28360 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
MSX1P28360 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC14.76□□□□□ -0.05
MSX1P28360 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC14.76□□□□□ -0.05
MSX1P28360 WT1-209ENST00000530998 2421 ntTSL 2 BASIC14.76□□□□□ -0.05
MSX1P28360 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
MSX1P28360 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC14.76□□□□□ -0.05
MSX1P28360 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
MSX1P28360 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
MSX1P28360 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC14.76□□□□□ -0.05
MSX1P28360 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
MSX1P28360 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
MSX1P28360 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC14.76□□□□□ -0.05
MSX1P28360 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC14.76□□□□□ -0.05
MSX1P28360 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC14.76□□□□□ -0.05
MSX1P28360 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC14.76□□□□□ -0.05
MSX1P28360 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
MSX1P28360 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
MSX1P28360 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC14.76□□□□□ -0.05
MSX1P28360 RAC2-204ENST00000406508 893 ntTSL 5 BASIC14.76□□□□□ -0.05
MSX1P28360 AL512638.1-201ENST00000457493 794 ntBASIC14.76□□□□□ -0.05
MSX1P28360 HAPLN1-206ENST00000514416 1145 ntTSL 5 BASIC14.76□□□□□ -0.05
MSX1P28360 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
MSX1P28360 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC14.76□□□□□ -0.05
MSX1P28360 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC14.76□□□□□ -0.05
MSX1P28360 LINC02560-201ENST00000596379 459 ntBASIC14.76□□□□□ -0.05
MSX1P28360 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC14.76□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms