RNA–Protein interactions for RNA: ENST00000242729.6

SSPN-201, Transcript of sarcospan, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SSPN, Length 2,788 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSPN-201ENST00000242729 NISCHQ9Y2I1 1504 aa34.52■■■■□ 3.12
SSPN-201ENST00000242729 SHROOM4Q9ULL8 1493 aa30.2■■■□□ 2.42
SSPN-201ENST00000242729 SUPT5HO00267 1087 aaKnown RBP29.61■■■□□ 2.33
SSPN-201ENST00000242729 DCAF8L2P0C7V8 631 aa29.49■■■□□ 2.31
SSPN-201ENST00000242729 ZCCHC6Q5VYS8 1495 aaKnown RBP29.14■■■□□ 2.25
SSPN-201ENST00000242729 CCDC180Q9P1Z9 1646 aa28.99■■■□□ 2.23
SSPN-201ENST00000242729 CHIC1Q5VXU3 224 aa28.46■■■□□ 2.15
SSPN-201ENST00000242729 MYO15BQ96JP2 1530 aa28.4■■■□□ 2.14
SSPN-201ENST00000242729 DCAF1Q9Y4B6 1507 aa27.96■■■□□ 2.07
SSPN-201ENST00000242729 LOC105371045A0A1W2PR82 267 aa27.94■■■□□ 2.06
SSPN-201ENST00000242729 PCGF6Q9BYE7 350 aa27.88■■■□□ 2.05
SSPN-201ENST00000242729 SCRIBQ14160 1630 aa27.75■■■□□ 2.03
SSPN-201ENST00000242729 HRCP23327 699 aa27.58■■■□□ 2.01
SSPN-201ENST00000242729 ABCC9O60706 1549 aa27.57■■■□□ 2
SSPN-201ENST00000242729 EHMT2Q96KQ7 1210 aa27.55■■■□□ 2
SSPN-201ENST00000242729 FAM9AQ8IZU1 332 aaPredicted RBP27.48■■□□□ 1.99
SSPN-201ENST00000242729 RSF1Q96T23 1441 aaPredicted RBP27.47■■□□□ 1.99
SSPN-201ENST00000242729 PPARGC1BQ86YN6 1023 aaKnown RBP27.44■■□□□ 1.98
SSPN-201ENST00000242729 TRIM41Q8WV44 630 aa27.34■■□□□ 1.97
SSPN-201ENST00000242729 RB1CC1Q8TDY2 1594 aa27.24■■□□□ 1.95
SSPN-201ENST00000242729 CECR2Q9BXF3 1484 aa27.21■■□□□ 1.95
SSPN-201ENST00000242729 MROH2BQ7Z745 1585 aa27.01■■□□□ 1.91
SSPN-201ENST00000242729 TRIM26Q12899 539 aaPredicted RBP27■■□□□ 1.91
SSPN-201ENST00000242729 NACADO15069 1562 aa26.94■■□□□ 1.9
SSPN-201ENST00000242729 WIZO95785 1651 aa26.87■■□□□ 1.89
SSPN-201ENST00000242729 PABPN1Q86U42 306 aaKnown RBP eCLIP26.61■■□□□ 1.85
SSPN-201ENST00000242729 TTBK1Q5TCY1 1321 aaPredicted RBP26.59■■□□□ 1.85
SSPN-201ENST00000242729 BAZ1AQ9NRL2 1556 aaPredicted RBP26.45■■□□□ 1.82
SSPN-201ENST00000242729 ABCC8Q09428 1581 aa26.43■■□□□ 1.82
SSPN-201ENST00000242729 CCDC88BA6NC98 1476 aa26.33■■□□□ 1.81
SSPN-201ENST00000242729 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.27■■□□□ 1.8
SSPN-201ENST00000242729 SMARCA4P51532 1647 aa26.27■■□□□ 1.8
SSPN-201ENST00000242729 UNC13AQ9UPW8 1703 aa26.23■■□□□ 1.79
SSPN-201ENST00000242729 TOP2AP11388 1531 aaKnown RBP26.22■■□□□ 1.79
SSPN-201ENST00000242729 ZEB1P37275 1124 aaPredicted RBP26.21■■□□□ 1.79
SSPN-201ENST00000242729 EIF4G1Q04637 1599 aaKnown RBP26.21■■□□□ 1.79
SSPN-201ENST00000242729 SOGA1O94964 1423 aa26.2■■□□□ 1.79
SSPN-201ENST00000242729 SMARCA2P51531 1590 aa26.16■■□□□ 1.78
SSPN-201ENST00000242729 UBTFP17480 764 aaKnown RBP26.14■■□□□ 1.78
SSPN-201ENST00000242729 RUSC2Q8N2Y8 1516 aa26.11■■□□□ 1.77
SSPN-201ENST00000242729 CCER1Q8TC90 406 aaPredicted RBP26.09■■□□□ 1.77
SSPN-201ENST00000242729 RANGAP1P46060 587 aaPredicted RBP26.02■■□□□ 1.76
SSPN-201ENST00000242729 CSRNP3Q8WYN3 585 aa26■■□□□ 1.75
SSPN-201ENST00000242729 CEP162Q5TB80 1403 aa25.98■■□□□ 1.75
SSPN-201ENST00000242729 BICRAQ9NZM4 1560 aa25.95■■□□□ 1.75
SSPN-201ENST00000242729 WRNQ14191 1432 aaPredicted RBP eCLIP25.82■■□□□ 1.72
SSPN-201ENST00000242729 TNIKQ9UKE5 1360 aa25.78■■□□□ 1.72
SSPN-201ENST00000242729 HNRNPUL2Q1KMD3 747 aaKnown RBP25.68■■□□□ 1.7
SSPN-201ENST00000242729 ATAD2BQ9ULI0 1458 aa25.68■■□□□ 1.7
SSPN-201ENST00000242729 SYNJ1O43426 1573 aa25.67■■□□□ 1.7
SSPN-201ENST00000242729 BAZ1BQ9UIG0 1483 aaKnown RBP25.66■■□□□ 1.7
SSPN-201ENST00000242729 GOLGA3Q08378 1498 aa25.64■■□□□ 1.7
SSPN-201ENST00000242729 EEA1Q15075 1411 aa25.6■■□□□ 1.69
SSPN-201ENST00000242729 SCAF1Q9H7N4 1312 aaKnown RBP25.59■■□□□ 1.69
SSPN-201ENST00000242729 PEG3Q9GZU2 1588 aa25.52■■□□□ 1.68
SSPN-201ENST00000242729 DIEXFQ68CQ4 756 aaKnown RBP25.5■■□□□ 1.67
SSPN-201ENST00000242729 CLIP1P30622 1438 aa25.49■■□□□ 1.67
SSPN-201ENST00000242729 RAPGEF2Q9Y4G8 1499 aa25.49■■□□□ 1.67
SSPN-201ENST00000242729 CEP164Q9UPV0 1460 aa25.46■■□□□ 1.67
SSPN-201ENST00000242729 APLP2Q06481 763 aa25.44■■□□□ 1.66
SSPN-201ENST00000242729 NEUROD1Q13562 356 aa25.34■■□□□ 1.65
SSPN-201ENST00000242729 KIF21BO75037 1637 aa25.28■■□□□ 1.64
SSPN-201ENST00000242729 VPS8Q8N3P4 1428 aa25.27■■□□□ 1.64
SSPN-201ENST00000242729 YTHDC1Q96MU7 727 aaKnown RBP25.25■■□□□ 1.63
SSPN-201ENST00000242729 ACIN1Q9UKV3 1341 aaKnown RBP25.21■■□□□ 1.63
SSPN-201ENST00000242729 ZNF316A6NFI3 1004 aaPredicted RBP25.2■■□□□ 1.62
SSPN-201ENST00000242729 KANK4Q5T7N3 995 aaPredicted RBP25.18■■□□□ 1.62
SSPN-201ENST00000242729 TOP2BQ02880 1626 aa25.17■■□□□ 1.62
SSPN-201ENST00000242729 ITGAEP38570 1179 aa25.13■■□□□ 1.61
SSPN-201ENST00000242729 CUX1P39880 1505 aa25.09■■□□□ 1.61
SSPN-201ENST00000242729 GTF3C3Q9Y5Q9 886 aa25.09■■□□□ 1.61
SSPN-201ENST00000242729 NCAPD3P42695 1498 aa25.04■■□□□ 1.6
SSPN-201ENST00000242729 MIER1Q8N108 512 aa25.03■■□□□ 1.6
SSPN-201ENST00000242729 PRXQ9BXM0 1461 aa25.01■■□□□ 1.59
SSPN-201ENST00000242729 CENPBP07199 599 aaPredicted RBP25■■□□□ 1.59
SSPN-201ENST00000242729 ARAP1Q96P48 1450 aa25■■□□□ 1.59
SSPN-201ENST00000242729 BIVM-ERCC5R4GMW8 1640 aa24.99■■□□□ 1.59
SSPN-201ENST00000242729 KIF27Q86VH2 1401 aa24.97■■□□□ 1.59
SSPN-201ENST00000242729 P3H3Q8IVL6 736 aa24.94■■□□□ 1.58
SSPN-201ENST00000242729 ATP1B4Q9UN42 357 aaPredicted RBP24.92■■□□□ 1.58
SSPN-201ENST00000242729 HMGXB3Q12766 1538 aa24.92■■□□□ 1.58
SSPN-201ENST00000242729 CFTRP13569 1480 aa24.91■■□□□ 1.58
SSPN-201ENST00000242729 CUX2O14529 1486 aa24.87■■□□□ 1.57
SSPN-201ENST00000242729 ERICH3Q5RHP9 1530 aa24.85■■□□□ 1.57
SSPN-201ENST00000242729 ARHGAP35Q9NRY4 1499 aa24.8■■□□□ 1.56
SSPN-201ENST00000242729 DHX57Q6P158 1386 aaKnown RBP24.8■■□□□ 1.56
SSPN-201ENST00000242729 IGF1RP08069 1367 aa24.78■■□□□ 1.56
SSPN-201ENST00000242729 CADPSQ9ULU8 1353 aa24.73■■□□□ 1.55
SSPN-201ENST00000242729 CARMIL1Q5VZK9 1371 aa24.7■■□□□ 1.54
SSPN-201ENST00000242729 FGD5Q6ZNL6 1462 aa24.69■■□□□ 1.54
SSPN-201ENST00000242729 FAM50AQ14320 339 aaKnown RBP24.68■■□□□ 1.54
SSPN-201ENST00000242729 CCNB3Q8WWL7 1395 aa24.68■■□□□ 1.54
SSPN-201ENST00000242729 RAD54L2Q9Y4B4 1467 aa24.6■■□□□ 1.53
SSPN-201ENST00000242729 RRBP1Q9P2E9 1410 aaKnown RBP24.6■■□□□ 1.53
SSPN-201ENST00000242729 NESP48681 1621 aa24.57■■□□□ 1.52
SSPN-201ENST00000242729 CC2D2AQ9P2K1 1620 aa24.56■■□□□ 1.52
SSPN-201ENST00000242729 FANCD2Q9BXW9 1451 aa24.54■■□□□ 1.52
SSPN-201ENST00000242729 RAB3GAP2Q9H2M9 1393 aa24.54■■□□□ 1.52
SSPN-201ENST00000242729 PELP1Q8IZL8 1130 aaKnown RBP24.54■■□□□ 1.52
SSPN-201ENST00000242729 SIN3AQ96ST3 1273 aa24.51■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms