RNA–Protein interactions for RNA: ENST00000372409.7

PCIF1-201, Transcript of PDX1 C-terminal inhibiting factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCIF1, Length 2,747 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1-201ENST00000372409 NISCHQ9Y2I1 1504 aa34.41■■■■□ 3.1
PCIF1-201ENST00000372409 SHROOM4Q9ULL8 1493 aa29.56■■■□□ 2.32
PCIF1-201ENST00000372409 CCDC180Q9P1Z9 1646 aa29.19■■■□□ 2.26
PCIF1-201ENST00000372409 ZCCHC6Q5VYS8 1495 aaKnown RBP29.1■■■□□ 2.25
PCIF1-201ENST00000372409 SUPT5HO00267 1087 aaKnown RBP29.02■■■□□ 2.24
PCIF1-201ENST00000372409 DCAF8L2P0C7V8 631 aa28.77■■■□□ 2.2
PCIF1-201ENST00000372409 DCAF1Q9Y4B6 1507 aa28.15■■■□□ 2.1
PCIF1-201ENST00000372409 CHIC1Q5VXU3 224 aa28.14■■■□□ 2.1
PCIF1-201ENST00000372409 MYO15BQ96JP2 1530 aa28.03■■■□□ 2.08
PCIF1-201ENST00000372409 SCRIBQ14160 1630 aa27.49■■□□□ 1.99
PCIF1-201ENST00000372409 ABCC9O60706 1549 aa27.48■■□□□ 1.99
PCIF1-201ENST00000372409 PCGF6Q9BYE7 350 aa27.41■■□□□ 1.98
PCIF1-201ENST00000372409 LOC105371045A0A1W2PR82 267 aa27.38■■□□□ 1.97
PCIF1-201ENST00000372409 HRCP23327 699 aa27.37■■□□□ 1.97
PCIF1-201ENST00000372409 RSF1Q96T23 1441 aaPredicted RBP27.27■■□□□ 1.96
PCIF1-201ENST00000372409 RB1CC1Q8TDY2 1594 aa27.03■■□□□ 1.92
PCIF1-201ENST00000372409 NACADO15069 1562 aa27■■□□□ 1.91
PCIF1-201ENST00000372409 TRIM41Q8WV44 630 aa26.99■■□□□ 1.91
PCIF1-201ENST00000372409 CECR2Q9BXF3 1484 aa26.88■■□□□ 1.89
PCIF1-201ENST00000372409 PPARGC1BQ86YN6 1023 aaKnown RBP26.87■■□□□ 1.89
PCIF1-201ENST00000372409 FAM9AQ8IZU1 332 aaPredicted RBP26.85■■□□□ 1.89
PCIF1-201ENST00000372409 TRIM26Q12899 539 aaPredicted RBP26.82■■□□□ 1.88
PCIF1-201ENST00000372409 MROH2BQ7Z745 1585 aa26.79■■□□□ 1.88
PCIF1-201ENST00000372409 EHMT2Q96KQ7 1210 aa26.69■■□□□ 1.86
PCIF1-201ENST00000372409 WIZO95785 1651 aa26.67■■□□□ 1.86
PCIF1-201ENST00000372409 BAZ1AQ9NRL2 1556 aaPredicted RBP26.45■■□□□ 1.83
PCIF1-201ENST00000372409 ZEB1P37275 1124 aaPredicted RBP26.24■■□□□ 1.79
PCIF1-201ENST00000372409 EIF4G1Q04637 1599 aaKnown RBP26.23■■□□□ 1.79
PCIF1-201ENST00000372409 SMARCA4P51532 1647 aa26.21■■□□□ 1.79
PCIF1-201ENST00000372409 TOP2AP11388 1531 aaKnown RBP26.2■■□□□ 1.79
PCIF1-201ENST00000372409 UNC13AQ9UPW8 1703 aa26.18■■□□□ 1.78
PCIF1-201ENST00000372409 CCDC88BA6NC98 1476 aa26.13■■□□□ 1.77
PCIF1-201ENST00000372409 ABCC8Q09428 1581 aa26.12■■□□□ 1.77
PCIF1-201ENST00000372409 SMARCA2P51531 1590 aa26.07■■□□□ 1.76
PCIF1-201ENST00000372409 PABPN1Q86U42 306 aaKnown RBP eCLIP26.01■■□□□ 1.76
PCIF1-201ENST00000372409 SOGA1O94964 1423 aa25.88■■□□□ 1.73
PCIF1-201ENST00000372409 TTBK1Q5TCY1 1321 aaPredicted RBP25.83■■□□□ 1.73
PCIF1-201ENST00000372409 BICRAQ9NZM4 1560 aa25.82■■□□□ 1.72
PCIF1-201ENST00000372409 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.8■■□□□ 1.72
PCIF1-201ENST00000372409 CEP162Q5TB80 1403 aa25.78■■□□□ 1.72
PCIF1-201ENST00000372409 CCER1Q8TC90 406 aaPredicted RBP25.75■■□□□ 1.71
PCIF1-201ENST00000372409 CSRNP3Q8WYN3 585 aa25.75■■□□□ 1.71
PCIF1-201ENST00000372409 RUSC2Q8N2Y8 1516 aa25.74■■□□□ 1.71
PCIF1-201ENST00000372409 UBTFP17480 764 aaKnown RBP25.74■■□□□ 1.71
PCIF1-201ENST00000372409 TNIKQ9UKE5 1360 aa25.7■■□□□ 1.71
PCIF1-201ENST00000372409 EEA1Q15075 1411 aa25.7■■□□□ 1.7
PCIF1-201ENST00000372409 WRNQ14191 1432 aaPredicted RBP eCLIP25.69■■□□□ 1.7
PCIF1-201ENST00000372409 PEG3Q9GZU2 1588 aa25.62■■□□□ 1.69
PCIF1-201ENST00000372409 GOLGA3Q08378 1498 aa25.57■■□□□ 1.68
PCIF1-201ENST00000372409 ATAD2BQ9ULI0 1458 aa25.52■■□□□ 1.68
PCIF1-201ENST00000372409 BAZ1BQ9UIG0 1483 aaKnown RBP25.5■■□□□ 1.67
PCIF1-201ENST00000372409 SYNJ1O43426 1573 aa25.5■■□□□ 1.67
PCIF1-201ENST00000372409 CEP164Q9UPV0 1460 aa25.41■■□□□ 1.66
PCIF1-201ENST00000372409 KIF21BO75037 1637 aa25.34■■□□□ 1.65
PCIF1-201ENST00000372409 CLIP1P30622 1438 aa25.31■■□□□ 1.64
PCIF1-201ENST00000372409 RANGAP1P46060 587 aaPredicted RBP25.3■■□□□ 1.64
PCIF1-201ENST00000372409 SCAF1Q9H7N4 1312 aaKnown RBP25.26■■□□□ 1.63
PCIF1-201ENST00000372409 RAPGEF2Q9Y4G8 1499 aa25.23■■□□□ 1.63
PCIF1-201ENST00000372409 DIEXFQ68CQ4 756 aaKnown RBP25.23■■□□□ 1.63
PCIF1-201ENST00000372409 HNRNPUL2Q1KMD3 747 aaKnown RBP25.21■■□□□ 1.63
PCIF1-201ENST00000372409 APLP2Q06481 763 aa25.2■■□□□ 1.62
PCIF1-201ENST00000372409 VPS8Q8N3P4 1428 aa25.17■■□□□ 1.62
PCIF1-201ENST00000372409 TOP2BQ02880 1626 aa25.16■■□□□ 1.62
PCIF1-201ENST00000372409 BIVM-ERCC5R4GMW8 1640 aa25.05■■□□□ 1.6
PCIF1-201ENST00000372409 ACIN1Q9UKV3 1341 aaKnown RBP25.02■■□□□ 1.6
PCIF1-201ENST00000372409 ZNF316A6NFI3 1004 aaPredicted RBP25.01■■□□□ 1.59
PCIF1-201ENST00000372409 NEUROD1Q13562 356 aa25■■□□□ 1.59
PCIF1-201ENST00000372409 NCAPD3P42695 1498 aa24.99■■□□□ 1.59
PCIF1-201ENST00000372409 HMGXB3Q12766 1538 aa24.98■■□□□ 1.59
PCIF1-201ENST00000372409 CUX1P39880 1505 aa24.93■■□□□ 1.58
PCIF1-201ENST00000372409 PRXQ9BXM0 1461 aa24.93■■□□□ 1.58
PCIF1-201ENST00000372409 CENPBP07199 599 aaPredicted RBP24.92■■□□□ 1.58
PCIF1-201ENST00000372409 ERICH3Q5RHP9 1530 aa24.92■■□□□ 1.58
PCIF1-201ENST00000372409 KIF27Q86VH2 1401 aa24.86■■□□□ 1.57
PCIF1-201ENST00000372409 ARAP1Q96P48 1450 aa24.85■■□□□ 1.57
PCIF1-201ENST00000372409 CFTRP13569 1480 aa24.82■■□□□ 1.56
PCIF1-201ENST00000372409 KANK4Q5T7N3 995 aaPredicted RBP24.79■■□□□ 1.56
PCIF1-201ENST00000372409 GTF3C3Q9Y5Q9 886 aa24.77■■□□□ 1.56
PCIF1-201ENST00000372409 PELP1Q8IZL8 1130 aaKnown RBP24.74■■□□□ 1.55
PCIF1-201ENST00000372409 YTHDC1Q96MU7 727 aaKnown RBP24.73■■□□□ 1.55
PCIF1-201ENST00000372409 MIER1Q8N108 512 aa24.68■■□□□ 1.54
PCIF1-201ENST00000372409 CUX2O14529 1486 aa24.63■■□□□ 1.53
PCIF1-201ENST00000372409 ARHGAP35Q9NRY4 1499 aa24.63■■□□□ 1.53
PCIF1-201ENST00000372409 DHX57Q6P158 1386 aaKnown RBP24.61■■□□□ 1.53
PCIF1-201ENST00000372409 PRDM2Q13029 1718 aa24.6■■□□□ 1.53
PCIF1-201ENST00000372409 ITGAEP38570 1179 aa24.57■■□□□ 1.52
PCIF1-201ENST00000372409 CADPSQ9ULU8 1353 aa24.57■■□□□ 1.52
PCIF1-201ENST00000372409 IGF1RP08069 1367 aa24.56■■□□□ 1.52
PCIF1-201ENST00000372409 RRBP1Q9P2E9 1410 aaKnown RBP24.56■■□□□ 1.52
PCIF1-201ENST00000372409 CLSPNQ9HAW4 1339 aa24.56■■□□□ 1.52
PCIF1-201ENST00000372409 CCNB3Q8WWL7 1395 aa24.52■■□□□ 1.52
PCIF1-201ENST00000372409 FGD5Q6ZNL6 1462 aa24.51■■□□□ 1.51
PCIF1-201ENST00000372409 CARMIL1Q5VZK9 1371 aa24.49■■□□□ 1.51
PCIF1-201ENST00000372409 P3H3Q8IVL6 736 aa24.38■■□□□ 1.49
PCIF1-201ENST00000372409 CC2D2AQ9P2K1 1620 aa24.38■■□□□ 1.49
PCIF1-201ENST00000372409 TIAM1Q13009 1591 aa24.37■■□□□ 1.49
PCIF1-201ENST00000372409 ATP1B4Q9UN42 357 aaPredicted RBP24.37■■□□□ 1.49
PCIF1-201ENST00000372409 FANCD2Q9BXW9 1451 aa24.35■■□□□ 1.49
PCIF1-201ENST00000372409 RAB3GAP2Q9H2M9 1393 aa24.31■■□□□ 1.48
PCIF1-201ENST00000372409 LRRC9Q6ZRR7 1453 aa24.29■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms