RNA–Protein interactions for RNA: ENST00000596379.1

LINC02560-201, Transcript of long intergenic non-protein coding RNA 2560, humanhuman

BASIC

Gene LINC02560, Length 459 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC02560-201ENST00000596379 NISCHQ9Y2I1 1504 aa39.94■■■■□ 3.98
LINC02560-201ENST00000596379 ABCC9O60706 1549 aa35.93■■■■□ 3.34
LINC02560-201ENST00000596379 CCDC180Q9P1Z9 1646 aa35.81■■■■□ 3.32
LINC02560-201ENST00000596379 RB1CC1Q8TDY2 1594 aa34.14■■■■□ 3.06
LINC02560-201ENST00000596379 NACADO15069 1562 aa33.89■■■■□ 3.02
LINC02560-201ENST00000596379 DCAF8L2P0C7V8 631 aa33.84■■■■□ 3.01
LINC02560-201ENST00000596379 DNAJC5BQ9UF47 199 aa33.79■■■■□ 3
LINC02560-201ENST00000596379 PABPN1Q86U42 306 aaKnown RBP eCLIP33.49■■■□□ 2.95
LINC02560-201ENST00000596379 UNC13AQ9UPW8 1703 aa33.39■■■□□ 2.94
LINC02560-201ENST00000596379 MYO15BQ96JP2 1530 aa33.38■■■□□ 2.93
LINC02560-201ENST00000596379 BICRAQ9NZM4 1560 aa33.16■■■□□ 2.9
LINC02560-201ENST00000596379 ZCCHC6Q5VYS8 1495 aaKnown RBP33.06■■■□□ 2.88
LINC02560-201ENST00000596379 DCAF1Q9Y4B6 1507 aa32.95■■■□□ 2.87
LINC02560-201ENST00000596379 SCRIBQ14160 1630 aa32.67■■■□□ 2.82
LINC02560-201ENST00000596379 SHROOM4Q9ULL8 1493 aa32.64■■■□□ 2.82
LINC02560-201ENST00000596379 CC2D2AQ9P2K1 1620 aa32.44■■■□□ 2.78
LINC02560-201ENST00000596379 CECR2Q9BXF3 1484 aa32.35■■■□□ 2.77
LINC02560-201ENST00000596379 EIF4G1Q04637 1599 aaKnown RBP32.34■■■□□ 2.77
LINC02560-201ENST00000596379 NCAPD3P42695 1498 aa31.31■■■□□ 2.6
LINC02560-201ENST00000596379 ATAD2BQ9ULI0 1458 aa31.21■■■□□ 2.59
LINC02560-201ENST00000596379 SMARCA4P51532 1647 aa31.15■■■□□ 2.58
LINC02560-201ENST00000596379 SMARCA2P51531 1590 aa31.1■■■□□ 2.57
LINC02560-201ENST00000596379 DNAJC5Q9H3Z4 198 aa31.04■■■□□ 2.56
LINC02560-201ENST00000596379 HMGXB3Q12766 1538 aa31.03■■■□□ 2.56
LINC02560-201ENST00000596379 ERCC6Q03468 1493 aa31.01■■■□□ 2.55
LINC02560-201ENST00000596379 BAZ1AQ9NRL2 1556 aaPredicted RBP30.99■■■□□ 2.55
LINC02560-201ENST00000596379 CUX2O14529 1486 aa30.94■■■□□ 2.54
LINC02560-201ENST00000596379 BAZ1BQ9UIG0 1483 aaKnown RBP30.89■■■□□ 2.54
LINC02560-201ENST00000596379 NESP48681 1621 aa30.85■■■□□ 2.53
LINC02560-201ENST00000596379 PEG3Q9GZU2 1588 aa30.83■■■□□ 2.53
LINC02560-201ENST00000596379 MROH2BQ7Z745 1585 aa30.79■■■□□ 2.52
LINC02560-201ENST00000596379 LAMC3Q9Y6N6 1575 aa30.58■■■□□ 2.49
LINC02560-201ENST00000596379 THOC2Q8NI27 1593 aaKnown RBP30.49■■■□□ 2.47
LINC02560-201ENST00000596379 PDS5BQ9NTI5 1447 aa30.44■■■□□ 2.46
LINC02560-201ENST00000596379 KIF21AQ7Z4S6 1674 aa30.43■■■□□ 2.46
LINC02560-201ENST00000596379 WIZO95785 1651 aa30.42■■■□□ 2.46
LINC02560-201ENST00000596379 CADPSQ9ULU8 1353 aa30.37■■■□□ 2.45
LINC02560-201ENST00000596379 MRC2Q9UBG0 1479 aa30.17■■■□□ 2.42
LINC02560-201ENST00000596379 RSF1Q96T23 1441 aaPredicted RBP30.13■■■□□ 2.41
LINC02560-201ENST00000596379 WDR62O43379 1518 aa30.08■■■□□ 2.41
LINC02560-201ENST00000596379 CEP164Q9UPV0 1460 aa30.04■■■□□ 2.4
LINC02560-201ENST00000596379 FANCD2Q9BXW9 1451 aa30.01■■■□□ 2.4
LINC02560-201ENST00000596379 TOP2AP11388 1531 aaKnown RBP30■■■□□ 2.39
LINC02560-201ENST00000596379 CFTRP13569 1480 aa29.99■■■□□ 2.39
LINC02560-201ENST00000596379 URB2Q14146 1524 aaKnown RBP29.76■■■□□ 2.36
LINC02560-201ENST00000596379 CCDC88BA6NC98 1476 aa29.7■■■□□ 2.35
LINC02560-201ENST00000596379 TRIM41Q8WV44 630 aa29.69■■■□□ 2.34
LINC02560-201ENST00000596379 PRDM2Q13029 1718 aa29.67■■■□□ 2.34
LINC02560-201ENST00000596379 OSCARQ8IYS5 282 aa29.59■■■□□ 2.33
LINC02560-201ENST00000596379 IFT140Q96RY7 1462 aa29.44■■■□□ 2.3
LINC02560-201ENST00000596379 TOPBP1Q92547 1522 aa29.44■■■□□ 2.3
LINC02560-201ENST00000596379 ZNF608Q9ULD9 1512 aaPredicted RBP29.42■■■□□ 2.3
LINC02560-201ENST00000596379 ABCC8Q09428 1581 aa29.36■■■□□ 2.29
LINC02560-201ENST00000596379 DNMBPQ6XZF7 1577 aa29.31■■■□□ 2.28
LINC02560-201ENST00000596379 EIF4G3O43432 1585 aaKnown RBP29.22■■■□□ 2.27
LINC02560-201ENST00000596379 AQRO60306 1485 aaKnown RBP eCLIP29.17■■■□□ 2.26
LINC02560-201ENST00000596379 TARBP1Q13395 1621 aaKnown RBP29.17■■■□□ 2.26
LINC02560-201ENST00000596379 RIMBP3CA6NJZ7 1639 aa29.16■■■□□ 2.26
LINC02560-201ENST00000596379 RIMBP3BA6NNM3 1639 aa29.16■■■□□ 2.26
LINC02560-201ENST00000596379 RIMBP3Q9UFD9 1639 aa29.16■■■□□ 2.26
LINC02560-201ENST00000596379 POLA1P09884 1462 aaPredicted RBP29.13■■■□□ 2.25
LINC02560-201ENST00000596379 ARHGEF11O15085 1522 aa29.06■■■□□ 2.24
LINC02560-201ENST00000596379 RAD54L2Q9Y4B4 1467 aa29.06■■■□□ 2.24
LINC02560-201ENST00000596379 SOGA1O94964 1423 aa29.03■■■□□ 2.24
LINC02560-201ENST00000596379 CHD1O14646 1710 aa29.03■■■□□ 2.24
LINC02560-201ENST00000596379 FBLN2P98095 1184 aa29.03■■■□□ 2.24
LINC02560-201ENST00000596379 TDRD9Q8NDG6 1382 aaKnown RBP28.99■■■□□ 2.23
LINC02560-201ENST00000596379 FGD5Q6ZNL6 1462 aa28.95■■■□□ 2.22
LINC02560-201ENST00000596379 CYB5RLQ6IPT4 315 aa28.93■■■□□ 2.22
LINC02560-201ENST00000596379 CUX1P39880 1505 aa28.92■■■□□ 2.22
LINC02560-201ENST00000596379 SUPT5HO00267 1087 aaKnown RBP28.84■■■□□ 2.21
LINC02560-201ENST00000596379 SNAPC4Q5SXM2 1469 aa28.83■■■□□ 2.21
LINC02560-201ENST00000596379 WDR97A6NE52 1622 aa28.83■■■□□ 2.21
LINC02560-201ENST00000596379 CHMP7Q8WUX9 453 aaPredicted RBP28.79■■■□□ 2.2
LINC02560-201ENST00000596379 ARAP1Q96P48 1450 aa28.77■■■□□ 2.2
LINC02560-201ENST00000596379 GRIN2BQ13224 1484 aa28.75■■■□□ 2.19
LINC02560-201ENST00000596379 MAGI1Q96QZ7 1491 aaPredicted RBP28.74■■■□□ 2.19
LINC02560-201ENST00000596379 CLASP1Q7Z460 1538 aa28.68■■■□□ 2.18
LINC02560-201ENST00000596379 SYNJ1O43426 1573 aa28.67■■■□□ 2.18
LINC02560-201ENST00000596379 SYNJ2O15056 1496 aa28.66■■■□□ 2.18
LINC02560-201ENST00000596379 GAPVD1Q14C86 1478 aa28.66■■■□□ 2.18
LINC02560-201ENST00000596379 PBRM1Q86U86 1689 aa28.63■■■□□ 2.17
LINC02560-201ENST00000596379 TRHP20396 242 aaPredicted RBP28.62■■■□□ 2.17
LINC02560-201ENST00000596379 ABCA10Q8WWZ4 1543 aa28.61■■■□□ 2.17
LINC02560-201ENST00000596379 ABCA5Q8WWZ7 1642 aa28.55■■■□□ 2.16
LINC02560-201ENST00000596379 WRNQ14191 1432 aaPredicted RBP eCLIP28.5■■■□□ 2.15
LINC02560-201ENST00000596379 TOP2BQ02880 1626 aa28.43■■■□□ 2.14
LINC02560-201ENST00000596379 BIVM-ERCC5R4GMW8 1640 aa28.42■■■□□ 2.14
LINC02560-201ENST00000596379 GRIN2AQ12879 1464 aa28.38■■■□□ 2.13
LINC02560-201ENST00000596379 ADAMTS12P58397 1594 aa28.33■■■□□ 2.13
LINC02560-201ENST00000596379 CEP170Q5SW79 1584 aa28.28■■■□□ 2.12
LINC02560-201ENST00000596379 FHAD1B1AJZ9 1412 aa28.28■■■□□ 2.12
LINC02560-201ENST00000596379 NUP160Q12769 1436 aa28.28■■■□□ 2.12
LINC02560-201ENST00000596379 ERCC6L2Q5T890 1561 aa28.27■■■□□ 2.12
LINC02560-201ENST00000596379 ERICH3Q5RHP9 1530 aa28.23■■■□□ 2.11
LINC02560-201ENST00000596379 SHROOM2Q13796 1616 aa28.15■■■□□ 2.1
LINC02560-201ENST00000596379 JPH4Q96JJ6 628 aa28.06■■■□□ 2.08
LINC02560-201ENST00000596379 PRG4Q92954 1404 aaPredicted RBP28.05■■■□□ 2.08
LINC02560-201ENST00000596379 RUSC2Q8N2Y8 1516 aa27.93■■■□□ 2.06
LINC02560-201ENST00000596379 IGF1RP08069 1367 aa27.92■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms