RNA–Protein interactions for RNA: ENST00000270115.7

LRRC56-201, Transcript of leucine rich repeat containing 56, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LRRC56, Length 2,769 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC56-201ENST00000270115 NISCHQ9Y2I1 1504 aa33.34■■■□□ 2.93
LRRC56-201ENST00000270115 HRCP23327 699 aa29.15■■■□□ 2.26
LRRC56-201ENST00000270115 SHROOM4Q9ULL8 1493 aa28.91■■■□□ 2.22
LRRC56-201ENST00000270115 SUPT5HO00267 1087 aaKnown RBP28.84■■■□□ 2.21
LRRC56-201ENST00000270115 PPARGC1BQ86YN6 1023 aaKnown RBP28.72■■■□□ 2.19
LRRC56-201ENST00000270115 PCGF6Q9BYE7 350 aa28.67■■■□□ 2.18
LRRC56-201ENST00000270115 CCDC180Q9P1Z9 1646 aa28.57■■■□□ 2.16
LRRC56-201ENST00000270115 MYO15BQ96JP2 1530 aa28.44■■■□□ 2.14
LRRC56-201ENST00000270115 CHIC1Q5VXU3 224 aa28.26■■■□□ 2.11
LRRC56-201ENST00000270115 PELP1Q8IZL8 1130 aaKnown RBP28.05■■■□□ 2.08
LRRC56-201ENST00000270115 DCAF8L2P0C7V8 631 aa28.04■■■□□ 2.08
LRRC56-201ENST00000270115 ZCCHC6Q5VYS8 1495 aaKnown RBP28.04■■■□□ 2.08
LRRC56-201ENST00000270115 LOC105371045A0A1W2PR82 267 aa27.74■■■□□ 2.03
LRRC56-201ENST00000270115 DCAF1Q9Y4B6 1507 aa27.7■■■□□ 2.02
LRRC56-201ENST00000270115 SCAF1Q9H7N4 1312 aaKnown RBP27.66■■■□□ 2.02
LRRC56-201ENST00000270115 TRIM26Q12899 539 aaPredicted RBP27.61■■■□□ 2.01
LRRC56-201ENST00000270115 ZEB1P37275 1124 aaPredicted RBP27.32■■□□□ 1.96
LRRC56-201ENST00000270115 ABCC9O60706 1549 aa27.25■■□□□ 1.95
LRRC56-201ENST00000270115 ACIN1Q9UKV3 1341 aaKnown RBP26.93■■□□□ 1.9
LRRC56-201ENST00000270115 NEUROD1Q13562 356 aa26.92■■□□□ 1.9
LRRC56-201ENST00000270115 MYT1Q01538 1121 aa26.9■■□□□ 1.9
LRRC56-201ENST00000270115 GTF3C3Q9Y5Q9 886 aa26.79■■□□□ 1.88
LRRC56-201ENST00000270115 SCRIBQ14160 1630 aa26.76■■□□□ 1.87
LRRC56-201ENST00000270115 EHMT2Q96KQ7 1210 aa26.72■■□□□ 1.87
LRRC56-201ENST00000270115 FAM9AQ8IZU1 332 aaPredicted RBP26.71■■□□□ 1.87
LRRC56-201ENST00000270115 NACADO15069 1562 aa26.62■■□□□ 1.85
LRRC56-201ENST00000270115 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.57■■□□□ 1.84
LRRC56-201ENST00000270115 TRIM41Q8WV44 630 aa26.57■■□□□ 1.84
LRRC56-201ENST00000270115 CENPBP07199 599 aaPredicted RBP26.57■■□□□ 1.84
LRRC56-201ENST00000270115 DIEXFQ68CQ4 756 aaKnown RBP26.49■■□□□ 1.83
LRRC56-201ENST00000270115 CCER1Q8TC90 406 aaPredicted RBP26.49■■□□□ 1.83
LRRC56-201ENST00000270115 RB1CC1Q8TDY2 1594 aa26.34■■□□□ 1.81
LRRC56-201ENST00000270115 YTHDC1Q96MU7 727 aaKnown RBP26.21■■□□□ 1.79
LRRC56-201ENST00000270115 RSF1Q96T23 1441 aaPredicted RBP26.21■■□□□ 1.79
LRRC56-201ENST00000270115 CECR2Q9BXF3 1484 aa26.12■■□□□ 1.77
LRRC56-201ENST00000270115 TTBK1Q5TCY1 1321 aaPredicted RBP26.08■■□□□ 1.76
LRRC56-201ENST00000270115 PABPN1Q86U42 306 aaKnown RBP eCLIP26■■□□□ 1.75
LRRC56-201ENST00000270115 ZNF316A6NFI3 1004 aaPredicted RBP25.94■■□□□ 1.74
LRRC56-201ENST00000270115 MROH2BQ7Z745 1585 aa25.92■■□□□ 1.74
LRRC56-201ENST00000270115 UNC13AQ9UPW8 1703 aa25.92■■□□□ 1.74
LRRC56-201ENST00000270115 MIER1Q8N108 512 aa25.84■■□□□ 1.73
LRRC56-201ENST00000270115 WIZO95785 1651 aa25.73■■□□□ 1.71
LRRC56-201ENST00000270115 BICRAQ9NZM4 1560 aa25.69■■□□□ 1.7
LRRC56-201ENST00000270115 BAZ1AQ9NRL2 1556 aaPredicted RBP25.62■■□□□ 1.69
LRRC56-201ENST00000270115 SMARCA4P51532 1647 aa25.51■■□□□ 1.67
LRRC56-201ENST00000270115 WRNQ14191 1432 aaPredicted RBP eCLIP25.44■■□□□ 1.66
LRRC56-201ENST00000270115 SUPT16HQ9Y5B9 1047 aaKnown RBP25.43■■□□□ 1.66
LRRC56-201ENST00000270115 HNRNPUL2Q1KMD3 747 aaKnown RBP25.41■■□□□ 1.66
LRRC56-201ENST00000270115 CEP162Q5TB80 1403 aa25.41■■□□□ 1.66
LRRC56-201ENST00000270115 ANP32EQ9BTT0 268 aa25.38■■□□□ 1.65
LRRC56-201ENST00000270115 BCL11AQ9H165 835 aa25.38■■□□□ 1.65
LRRC56-201ENST00000270115 TSHZ2Q9NRE2 1034 aa25.34■■□□□ 1.65
LRRC56-201ENST00000270115 TOP2AP11388 1531 aaKnown RBP25.26■■□□□ 1.64
LRRC56-201ENST00000270115 UBTFP17480 764 aaKnown RBP25.25■■□□□ 1.63
LRRC56-201ENST00000270115 CCDC88BA6NC98 1476 aa25.21■■□□□ 1.63
LRRC56-201ENST00000270115 TNIKQ9UKE5 1360 aa25.18■■□□□ 1.62
LRRC56-201ENST00000270115 CLSPNQ9HAW4 1339 aa25.17■■□□□ 1.62
LRRC56-201ENST00000270115 CSRNP3Q8WYN3 585 aa25.17■■□□□ 1.62
LRRC56-201ENST00000270115 ABCC8Q09428 1581 aa25.14■■□□□ 1.61
LRRC56-201ENST00000270115 SMARCA2P51531 1590 aa25.13■■□□□ 1.61
LRRC56-201ENST00000270115 SOGA1O94964 1423 aa25.13■■□□□ 1.61
LRRC56-201ENST00000270115 ATAD2BQ9ULI0 1458 aa25.06■■□□□ 1.6
LRRC56-201ENST00000270115 EIF4G1Q04637 1599 aaKnown RBP25.04■■□□□ 1.6
LRRC56-201ENST00000270115 BCANQ96GW7 911 aa25.04■■□□□ 1.6
LRRC56-201ENST00000270115 PEG3Q9GZU2 1588 aa25.02■■□□□ 1.6
LRRC56-201ENST00000270115 RUSC2Q8N2Y8 1516 aa24.98■■□□□ 1.59
LRRC56-201ENST00000270115 BAZ1BQ9UIG0 1483 aaKnown RBP24.93■■□□□ 1.58
LRRC56-201ENST00000270115 KCNH8Q96L42 1107 aa24.88■■□□□ 1.57
LRRC56-201ENST00000270115 GOLGA3Q08378 1498 aa24.84■■□□□ 1.57
LRRC56-201ENST00000270115 APLP2Q06481 763 aa24.83■■□□□ 1.57
LRRC56-201ENST00000270115 FKBP8Q14318 412 aa24.82■■□□□ 1.56
LRRC56-201ENST00000270115 RANGAP1P46060 587 aaPredicted RBP24.82■■□□□ 1.56
LRRC56-201ENST00000270115 EEA1Q15075 1411 aa24.78■■□□□ 1.56
LRRC56-201ENST00000270115 RBM19Q9Y4C8 960 aaKnown RBP24.75■■□□□ 1.55
LRRC56-201ENST00000270115 DHX57Q6P158 1386 aaKnown RBP24.74■■□□□ 1.55
LRRC56-201ENST00000270115 CLIP1P30622 1438 aa24.72■■□□□ 1.55
LRRC56-201ENST00000270115 NCAPD3P42695 1498 aa24.68■■□□□ 1.54
LRRC56-201ENST00000270115 ITGAEP38570 1179 aa24.65■■□□□ 1.54
LRRC56-201ENST00000270115 VPS8Q8N3P4 1428 aa24.65■■□□□ 1.54
LRRC56-201ENST00000270115 HMGXB3Q12766 1538 aa24.56■■□□□ 1.52
LRRC56-201ENST00000270115 NEFLP07196 543 aa24.56■■□□□ 1.52
LRRC56-201ENST00000270115 CEP164Q9UPV0 1460 aa24.56■■□□□ 1.52
LRRC56-201ENST00000270115 MSH5O43196 834 aa24.54■■□□□ 1.52
LRRC56-201ENST00000270115 DDX10Q13206 875 aaKnown RBP24.48■■□□□ 1.51
LRRC56-201ENST00000270115 SYNJ1O43426 1573 aa24.47■■□□□ 1.51
LRRC56-201ENST00000270115 TRIM52Q96A61 297 aa24.46■■□□□ 1.51
LRRC56-201ENST00000270115 CC2D2AQ9P2K1 1620 aa24.43■■□□□ 1.5
LRRC56-201ENST00000270115 KANK4Q5T7N3 995 aaPredicted RBP24.41■■□□□ 1.5
LRRC56-201ENST00000270115 KIF21BO75037 1637 aa24.41■■□□□ 1.5
LRRC56-201ENST00000270115 RAPGEF2Q9Y4G8 1499 aa24.4■■□□□ 1.5
LRRC56-201ENST00000270115 ERICH6Q7L0X2 663 aa24.36■■□□□ 1.49
LRRC56-201ENST00000270115 PRKCSHP14314 528 aaPredicted RBP24.36■■□□□ 1.49
LRRC56-201ENST00000270115 HIRIP3Q9BW71 556 aaPredicted RBP24.3■■□□□ 1.48
LRRC56-201ENST00000270115 CFTRP13569 1480 aa24.29■■□□□ 1.48
LRRC56-201ENST00000270115 DNAJC5BQ9UF47 199 aa24.28■■□□□ 1.48
LRRC56-201ENST00000270115 IRX6P78412 446 aaPredicted RBP24.24■■□□□ 1.47
LRRC56-201ENST00000270115 FANCIQ9NVI1 1328 aa24.21■■□□□ 1.47
LRRC56-201ENST00000270115 PPP1R15AO75807 674 aaPredicted RBP24.2■■□□□ 1.46
LRRC56-201ENST00000270115 SIN3AQ96ST3 1273 aa24.19■■□□□ 1.46
LRRC56-201ENST00000270115 CDK11AQ9UQ88 783 aaPredicted RBP24.19■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms