Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 UGP2-226ENST00000496334 565 ntTSL 512.06□□□□□ -0.488e-7■■■■■ 104.8
SF3B1O75533 UGP2-228ENST00000497883 605 ntTSL 39.68□□□□□ -0.868e-7■■■■■ 104.8
SF3B1O75533 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC5.42□□□□□ -1.548e-7■■■■■ 104.8
SF3B1O75533 UGP2-211ENST00000475550 4397 ntTSL 1 (best)4.78□□□□□ -1.648e-7■■■■■ 104.8
SF3B1O75533 UGP2-218ENST00000487042 889 ntTSL 54.07□□□□□ -1.768e-7■■■■■ 104.8
SF3B1O75533 UGP2-210ENST00000475462 560 ntTSL 43.86□□□□□ -1.798e-7■■■■■ 104.8
SF3B1O75533 SCAP-203ENST00000416208 1222 ntTSL 520.8■□□□□ 0.926e-6■■■■■ 104.8
SF3B1O75533 SEC14L1-204ENST00000436233 5295 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.416e-6■■■■■ 104.8
SF3B1O75533 SEC14L1-212ENST00000585618 2712 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.526e-6■■■■■ 104.8
SF3B1O75533 SEC14L1-205ENST00000443798 2908 ntAPPRIS ALT1 TSL 1 (best) BASIC11.56□□□□□ -0.566e-6■■■■■ 104.8
SF3B1O75533 SSH2-205ENST00000577483 1630 ntTSL 1 (best)13.91□□□□□ -0.182e-6■■■■■ 104.8
SF3B1O75533 SSH2-208ENST00000579040 965 ntTSL 1 (best)12.71□□□□□ -0.372e-6■■■■■ 104.8
SF3B1O75533 KSR1-211ENST00000580163 479 ntTSL 324.38■■□□□ 1.491e-6■■■■■ 104.7
SF3B1O75533 TCF4-258ENST00000627320 699 ntTSL 59.47□□□□□ -0.892e-6■■■■■ 104.7
SF3B1O75533 TCF4-227ENST00000565124 555 ntTSL 58.1□□□□□ -1.112e-6■■■■■ 104.7
SF3B1O75533 TCF4-269ENST00000630224 501 ntTSL 56.49□□□□□ -1.372e-6■■■■■ 104.7
SF3B1O75533 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.335e-6■■■■■ 104.7
SF3B1O75533 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.315e-6■■■■■ 104.7
SF3B1O75533 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.285e-6■■■■■ 104.7
SF3B1O75533 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.245e-6■■■■■ 104.7
SF3B1O75533 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.185e-6■■■■■ 104.7
SF3B1O75533 TSC2-206ENST00000439117 5073 ntTSL 1 (best)15.2■□□□□ 0.025e-6■■■■■ 104.7
SF3B1O75533 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.025e-6■■■■■ 104.7
SF3B1O75533 EIF2D-209ENST00000613435 437 ntTSL 35.71□□□□□ -1.52e-6■■■■■ 104.6
SF3B1O75533 PSMB2-201ENST00000373237 2701 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.516e-6■■■■■ 104.6
SF3B1O75533 TRAP1-207ENST00000571804 781 ntTSL 525.32■■□□□ 1.646e-7■■■■■ 104.6
SF3B1O75533 TRAP1-215ENST00000576106 555 ntTSL 425■■□□□ 1.596e-7■■■■■ 104.6
SF3B1O75533 TRAP1-203ENST00000570403 521 ntTSL 424.85■■□□□ 1.576e-7■■■■■ 104.6
SF3B1O75533 TRAP1-205ENST00000571011 480 ntTSL 523.43■■□□□ 1.346e-7■■■■■ 104.6
SF3B1O75533 TRAP1-211ENST00000574941 558 ntTSL 421.35■■□□□ 1.016e-7■■■■■ 104.6
SF3B1O75533 PIAS4-203ENST00000596144 587 ntTSL 320.37■□□□□ 0.852e-6■■■■■ 104.6
SF3B1O75533 MAP4K5-209ENST00000557390 545 ntTSL 319.23■□□□□ 0.677e-6■■■■■ 104.6
SF3B1O75533 DSCR3-206ENST00000475009 715 ntTSL 217.75■□□□□ 0.432e-9■■■■■ 104.6
SF3B1O75533 DSCR3-209ENST00000488368 1013 ntTSL 1 (best)17.04■□□□□ 0.322e-9■■■■■ 104.6
SF3B1O75533 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.32e-6■■■■■ 104.6
SF3B1O75533 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC16.76■□□□□ 0.272e-9■■■■■ 104.6
SF3B1O75533 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC16.52■□□□□ 0.242e-9■■■■■ 104.6
SF3B1O75533 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC16.29■□□□□ 0.22e-9■■■■■ 104.6
SF3B1O75533 MAP4K5-203ENST00000554091 619 ntTSL 315.57■□□□□ 0.087e-6■■■■■ 104.6
SF3B1O75533 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 03e-6■■■■■ 104.6
SF3B1O75533 FGGY-211ENST00000472783 333 ntTSL 515.01□□□□□ -0.017e-6■■■■■ 104.6
SF3B1O75533 RNF43-202ENST00000577625 2198 ntTSL 2 BASIC14.17□□□□□ -0.144e-6■■■■■ 104.6
SF3B1O75533 FGGY-210ENST00000471169 492 ntTSL 314.1□□□□□ -0.157e-6■■■■■ 104.6
SF3B1O75533 RNF43-205ENST00000581868 2610 ntTSL 2 BASIC14.02□□□□□ -0.174e-6■■■■■ 104.6
SF3B1O75533 DSCR3-203ENST00000399000 4398 ntTSL 1 (best)13.95□□□□□ -0.182e-9■■■■■ 104.6
SF3B1O75533 HDAC8-217ENST00000478743 563 ntTSL 413.71□□□□□ -0.213e-6■■■■■ 104.6
SF3B1O75533 RNF43-208ENST00000584437 5575 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.274e-6■■■■■ 104.6
SF3B1O75533 RNF43-201ENST00000407977 5516 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.284e-6■■■■■ 104.6
SF3B1O75533 GAB1-212ENST00000514639 728 ntTSL 313.28□□□□□ -0.286e-6■■■■■ 104.6
SF3B1O75533 DSCR3-201ENST00000309117 3256 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.382e-9■■■■■ 104.6
SF3B1O75533 FGGY-202ENST00000371210 1041 ntTSL 2 BASIC11.11□□□□□ -0.637e-6■■■■■ 104.6
SF3B1O75533 RNF43-203ENST00000577716 4367 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.674e-6■■■■■ 104.6
SF3B1O75533 PIAS4-204ENST00000599999 581 ntTSL 310.76□□□□□ -0.692e-6■■■■■ 104.6
SF3B1O75533 PIAS4-205ENST00000600566 624 ntTSL 210.76□□□□□ -0.692e-6■■■■■ 104.6
SF3B1O75533 RNF43-207ENST00000583753 3560 ntTSL 2 BASIC10.73□□□□□ -0.694e-6■■■■■ 104.6
SF3B1O75533 ATF7IP-222ENST00000544627 4847 ntAPPRIS ALT2 TSL 1 (best) BASIC7.52□□□□□ -1.27e-6■■■■■ 104.6
SF3B1O75533 DSCR3-208ENST00000480452 526 ntTSL 26.28□□□□□ -1.42e-9■■■■■ 104.6
SF3B1O75533 HDAC8-212ENST00000421523 592 ntTSL 36.25□□□□□ -1.413e-6■■■■■ 104.6
SF3B1O75533 ARHGAP21-215ENST00000486374 6846 ntTSL 25.58□□□□□ -1.527e-6■■■■■ 104.6
SF3B1O75533 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC4.75□□□□□ -1.657e-6■■■■■ 104.6
SF3B1O75533 LINC-PINT-206ENST00000435523 553 ntTSL 33.95□□□□□ -1.787e-6■■■■■ 104.6
SF3B1O75533 FGGY-214ENST00000476939 623 ntTSL 33.45□□□□□ -1.867e-6■■■■■ 104.6
SF3B1O75533 MAP4K5-206ENST00000555216 592 ntTSL 43.24□□□□□ -1.897e-6■■■■■ 104.6
SF3B1O75533 FGGY-217ENST00000493891 669 ntTSL 22.56□□□□□ -27e-6■■■■■ 104.6
SF3B1O75533 DSCR3-210ENST00000492514 318 ntTSL 32.07□□□□□ -2.082e-9■■■■■ 104.6
SF3B1O75533 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC24.35■■□□□ 1.492e-6■■■■■ 104.5
SF3B1O75533 SERGEF-207ENST00000527494 1314 ntTSL 523.61■■□□□ 1.372e-6■■■■■ 104.5
SF3B1O75533 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.882e-6■■■■■ 104.5
SF3B1O75533 SERGEF-205ENST00000525422 1525 ntTSL 1 (best)18.52■□□□□ 0.562e-6■■■■■ 104.5
SF3B1O75533 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC15.14■□□□□ 0.012e-6■■■■■ 104.5
SF3B1O75533 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC2.77□□□□□ -1.973e-6■■■■■ 104.5
SF3B1O75533 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.12e-6■■■■■ 104.5
SF3B1O75533 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.082e-6■■■■■ 104.5
SF3B1O75533 INPP5B-203ENST00000373024 3060 ntAPPRIS P2 TSL 1 (best) BASIC11.89□□□□□ -0.512e-6■■■■■ 104.5
SF3B1O75533 INPP5B-206ENST00000458109 3979 ntTSL 1 (best) BASIC10.42□□□□□ -0.742e-6■■■■■ 104.5
SF3B1O75533 PLIN3-206ENST00000589494 629 ntTSL 520.19■□□□□ 0.828e-7■■■■■ 104.5
SF3B1O75533 PLIN3-204ENST00000589034 574 ntTSL 519.85■□□□□ 0.778e-7■■■■■ 104.5
SF3B1O75533 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.28e-7■■■■■ 104.5
SF3B1O75533 PLIN3-207ENST00000592528 2154 ntTSL 2 BASIC14.53□□□□□ -0.088e-7■■■■■ 104.5
SF3B1O75533 PLIN3-201ENST00000221957 2333 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.248e-7■■■■■ 104.5
SF3B1O75533 OGDH-201ENST00000222673 4181 ntAPPRIS P3 TSL 1 (best) BASIC10.39□□□□□ -0.759e-7■■■■■ 104.4
SF3B1O75533 OGDH-210ENST00000631326 4116 ntTSL 5 BASIC8.69□□□□□ -1.029e-7■■■■■ 104.4
SF3B1O75533 TRPS1-201ENST00000220888 5480 ntTSL 1 (best) BASIC10.83□□□□□ -0.685e-6■■■■■ 104.4
SF3B1O75533 TRPS1-211ENST00000520276 4083 ntTSL 2 BASIC10.36□□□□□ -0.755e-6■■■■■ 104.4
SF3B1O75533 TRPS1-212ENST00000640765 9514 ntTSL 2 BASIC8.96□□□□□ -0.985e-6■■■■■ 104.4
SF3B1O75533 TRPS1-203ENST00000395715 9990 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.075e-6■■■■■ 104.4
SF3B1O75533 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.12e-6■■■■■ 104.4
SF3B1O75533 NBAS-208ENST00000442506 4391 ntTSL 1 (best)11.02□□□□□ -0.645e-6■■■■■ 104.4
SF3B1O75533 FAM49B-209ENST00000518879 820 ntTSL 520.41■□□□□ 0.864e-6■■■■■ 104.3
SF3B1O75533 FAM49B-219ENST00000521223 587 ntTSL 420.39■□□□□ 0.854e-6■■■■■ 104.3
SF3B1O75533 FAM49B-210ENST00000519020 573 ntTSL 517.59■□□□□ 0.414e-6■■■■■ 104.3
SF3B1O75533 FAM49B-206ENST00000518283 574 ntTSL 49.5□□□□□ -0.894e-6■■■■■ 104.3
SF3B1O75533 FAM49B-228ENST00000523993 581 ntTSL 36.58□□□□□ -1.364e-6■■■■■ 104.3
SF3B1O75533 FAM49B-222ENST00000522702 544 ntTSL 43.65□□□□□ -1.834e-6■■■■■ 104.3
SF3B1O75533 PVT1-219ENST00000523427 938 ntTSL 3 BASIC28.72■■■□□ 2.197e-6■■■■■ 104.3
SF3B1O75533 WDR34-204ENST00000473486 714 ntTSL 227.89■■■□□ 2.054e-6■■■■■ 104.3
SF3B1O75533 PVT1-201ENST00000504719 754 ntTSL 227.78■■■□□ 2.047e-6■■■■■ 104.3
SF3B1O75533 PVT1-204ENST00000517525 392 ntTSL 326.94■■□□□ 1.97e-6■■■■■ 104.3
SF3B1O75533 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC25.91■■□□□ 1.747e-6■■■■■ 104.3
SF3B1O75533 WDR34-205ENST00000480613 739 ntTSL 325.42■■□□□ 1.664e-6■■■■■ 104.3
Retrieved 100 of 46,956 protein–RNA pairs in 1495.7 ms