RNA–Protein interactions for RNA: ENST00000478743.1

HDAC8-217, Transcript of histone deacetylase 8, humanhuman

TSL 4

Gene HDAC8, Length 563 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC8-217ENST00000478743 NISCHQ9Y2I1 1504 aa32.44■■■□□ 2.78
HDAC8-217ENST00000478743 ABCC9O60706 1549 aa30.6■■■□□ 2.49
HDAC8-217ENST00000478743 DNAJC5BQ9UF47 199 aa29.63■■■□□ 2.33
HDAC8-217ENST00000478743 CCDC180Q9P1Z9 1646 aa29.57■■■□□ 2.32
HDAC8-217ENST00000478743 RB1CC1Q8TDY2 1594 aa28.58■■■□□ 2.17
HDAC8-217ENST00000478743 PABPN1Q86U42 306 aaKnown RBP eCLIP28.27■■■□□ 2.12
HDAC8-217ENST00000478743 UNC13AQ9UPW8 1703 aa28.18■■■□□ 2.1
HDAC8-217ENST00000478743 NACADO15069 1562 aa28.11■■■□□ 2.09
HDAC8-217ENST00000478743 BICRAQ9NZM4 1560 aa27.96■■■□□ 2.07
HDAC8-217ENST00000478743 DNAJC5Q9H3Z4 198 aa27.77■■■□□ 2.04
HDAC8-217ENST00000478743 DCAF8L2P0C7V8 631 aa27.68■■■□□ 2.02
HDAC8-217ENST00000478743 CECR2Q9BXF3 1484 aa27.6■■■□□ 2.01
HDAC8-217ENST00000478743 CC2D2AQ9P2K1 1620 aa27.59■■■□□ 2.01
HDAC8-217ENST00000478743 MYO15BQ96JP2 1530 aa27.33■■□□□ 1.97
HDAC8-217ENST00000478743 EIF4G1Q04637 1599 aaKnown RBP27.27■■□□□ 1.96
HDAC8-217ENST00000478743 SHROOM4Q9ULL8 1493 aa27.21■■□□□ 1.95
HDAC8-217ENST00000478743 SCRIBQ14160 1630 aa26.98■■□□□ 1.91
HDAC8-217ENST00000478743 ZCCHC6Q5VYS8 1495 aaKnown RBP26.71■■□□□ 1.87
HDAC8-217ENST00000478743 CUX2O14529 1486 aa26.66■■□□□ 1.86
HDAC8-217ENST00000478743 DCAF1Q9Y4B6 1507 aa26.65■■□□□ 1.86
HDAC8-217ENST00000478743 ERCC6Q03468 1493 aa26.38■■□□□ 1.81
HDAC8-217ENST00000478743 TRIM41Q8WV44 630 aa26.19■■□□□ 1.78
HDAC8-217ENST00000478743 NESP48681 1621 aa26.06■■□□□ 1.76
HDAC8-217ENST00000478743 THOC2Q8NI27 1593 aaKnown RBP26.01■■□□□ 1.75
HDAC8-217ENST00000478743 NCAPD3P42695 1498 aa25.95■■□□□ 1.74
HDAC8-217ENST00000478743 ATAD2BQ9ULI0 1458 aa25.79■■□□□ 1.72
HDAC8-217ENST00000478743 SMARCA2P51531 1590 aa25.78■■□□□ 1.72
HDAC8-217ENST00000478743 KIF21AQ7Z4S6 1674 aa25.73■■□□□ 1.71
HDAC8-217ENST00000478743 HMGXB3Q12766 1538 aa25.73■■□□□ 1.71
HDAC8-217ENST00000478743 SMARCA4P51532 1647 aa25.58■■□□□ 1.69
HDAC8-217ENST00000478743 LAMC3Q9Y6N6 1575 aa25.56■■□□□ 1.68
HDAC8-217ENST00000478743 BAZ1AQ9NRL2 1556 aaPredicted RBP25.48■■□□□ 1.67
HDAC8-217ENST00000478743 BAZ1BQ9UIG0 1483 aaKnown RBP25.47■■□□□ 1.67
HDAC8-217ENST00000478743 PDS5BQ9NTI5 1447 aa25.35■■□□□ 1.65
HDAC8-217ENST00000478743 WDR62O43379 1518 aa25.32■■□□□ 1.64
HDAC8-217ENST00000478743 MRC2Q9UBG0 1479 aa25.31■■□□□ 1.64
HDAC8-217ENST00000478743 PEG3Q9GZU2 1588 aa25.28■■□□□ 1.64
HDAC8-217ENST00000478743 RIMBP3CA6NJZ7 1639 aa25.23■■□□□ 1.63
HDAC8-217ENST00000478743 RIMBP3BA6NNM3 1639 aa25.23■■□□□ 1.63
HDAC8-217ENST00000478743 RIMBP3Q9UFD9 1639 aa25.23■■□□□ 1.63
HDAC8-217ENST00000478743 OSCARQ8IYS5 282 aa25.16■■□□□ 1.62
HDAC8-217ENST00000478743 CADPSQ9ULU8 1353 aa25.09■■□□□ 1.61
HDAC8-217ENST00000478743 MROH2BQ7Z745 1585 aa25.07■■□□□ 1.6
HDAC8-217ENST00000478743 CEP164Q9UPV0 1460 aa25■■□□□ 1.59
HDAC8-217ENST00000478743 ARHGEF11O15085 1522 aa24.98■■□□□ 1.59
HDAC8-217ENST00000478743 FANCD2Q9BXW9 1451 aa24.89■■□□□ 1.57
HDAC8-217ENST00000478743 URB2Q14146 1524 aaKnown RBP24.84■■□□□ 1.57
HDAC8-217ENST00000478743 WIZO95785 1651 aa24.76■■□□□ 1.55
HDAC8-217ENST00000478743 TRHP20396 242 aaPredicted RBP24.74■■□□□ 1.55
HDAC8-217ENST00000478743 CYB5RLQ6IPT4 315 aa24.73■■□□□ 1.55
HDAC8-217ENST00000478743 ZNF608Q9ULD9 1512 aaPredicted RBP24.71■■□□□ 1.55
HDAC8-217ENST00000478743 ARAP1Q96P48 1450 aa24.7■■□□□ 1.55
HDAC8-217ENST00000478743 AEBP2Q6ZN18 517 aaPredicted RBP24.7■■□□□ 1.54
HDAC8-217ENST00000478743 CFTRP13569 1480 aa24.65■■□□□ 1.54
HDAC8-217ENST00000478743 CHD1O14646 1710 aa24.58■■□□□ 1.53
HDAC8-217ENST00000478743 EIF4G3O43432 1585 aaKnown RBP24.54■■□□□ 1.52
HDAC8-217ENST00000478743 IFT140Q96RY7 1462 aa24.5■■□□□ 1.51
HDAC8-217ENST00000478743 PRDM2Q13029 1718 aa24.45■■□□□ 1.5
HDAC8-217ENST00000478743 RSF1Q96T23 1441 aaPredicted RBP24.36■■□□□ 1.49
HDAC8-217ENST00000478743 TOPBP1Q92547 1522 aa24.34■■□□□ 1.49
HDAC8-217ENST00000478743 AQRO60306 1485 aaKnown RBP eCLIP24.28■■□□□ 1.48
HDAC8-217ENST00000478743 TOP2AP11388 1531 aaKnown RBP24.28■■□□□ 1.48
HDAC8-217ENST00000478743 TARBP1Q13395 1621 aaKnown RBP24.26■■□□□ 1.47
HDAC8-217ENST00000478743 CLASP1Q7Z460 1538 aa24.21■■□□□ 1.47
HDAC8-217ENST00000478743 FBLN2P98095 1184 aa24.21■■□□□ 1.47
HDAC8-217ENST00000478743 DNMBPQ6XZF7 1577 aa24.16■■□□□ 1.46
HDAC8-217ENST00000478743 SNAPC4Q5SXM2 1469 aa24.04■■□□□ 1.44
HDAC8-217ENST00000478743 POLA1P09884 1462 aaPredicted RBP24.03■■□□□ 1.44
HDAC8-217ENST00000478743 ABCC8Q09428 1581 aa24.02■■□□□ 1.44
HDAC8-217ENST00000478743 SYNJ1O43426 1573 aa24■■□□□ 1.43
HDAC8-217ENST00000478743 CCDC88BA6NC98 1476 aa24■■□□□ 1.43
HDAC8-217ENST00000478743 RAD54L2Q9Y4B4 1467 aa24■■□□□ 1.43
HDAC8-217ENST00000478743 TDRD9Q8NDG6 1382 aaKnown RBP23.95■■□□□ 1.42
HDAC8-217ENST00000478743 ILDR1Q86SU0 546 aaPredicted RBP23.95■■□□□ 1.42
HDAC8-217ENST00000478743 GAPVD1Q14C86 1478 aa23.94■■□□□ 1.42
HDAC8-217ENST00000478743 ERCC6L2Q5T890 1561 aa23.86■■□□□ 1.41
HDAC8-217ENST00000478743 KIF13AQ9H1H9 1805 aa23.84■■□□□ 1.41
HDAC8-217ENST00000478743 MAGI1Q96QZ7 1491 aaPredicted RBP23.82■■□□□ 1.4
HDAC8-217ENST00000478743 CHMP7Q8WUX9 453 aaPredicted RBP23.81■■□□□ 1.4
HDAC8-217ENST00000478743 SOGA1O94964 1423 aa23.8■■□□□ 1.4
HDAC8-217ENST00000478743 WDR97A6NE52 1622 aa23.78■■□□□ 1.4
HDAC8-217ENST00000478743 SYNJ2O15056 1496 aa23.78■■□□□ 1.4
HDAC8-217ENST00000478743 FGD5Q6ZNL6 1462 aa23.75■■□□□ 1.39
HDAC8-217ENST00000478743 PBRM1Q86U86 1689 aa23.74■■□□□ 1.39
HDAC8-217ENST00000478743 GRIN2BQ13224 1484 aa23.73■■□□□ 1.39
HDAC8-217ENST00000478743 KDM4FA0A1W2PPD8 638 aa23.64■■□□□ 1.37
HDAC8-217ENST00000478743 CUX1P39880 1505 aa23.61■■□□□ 1.37
HDAC8-217ENST00000478743 CEP170Q5SW79 1584 aa23.61■■□□□ 1.37
HDAC8-217ENST00000478743 ABCA5Q8WWZ7 1642 aa23.52■■□□□ 1.36
HDAC8-217ENST00000478743 SHROOM2Q13796 1616 aa23.51■■□□□ 1.35
HDAC8-217ENST00000478743 GRIN2AQ12879 1464 aa23.48■■□□□ 1.35
HDAC8-217ENST00000478743 KDM6BO15054 1643 aa23.45■■□□□ 1.34
HDAC8-217ENST00000478743 DIP2BQ9P265 1576 aa23.44■■□□□ 1.34
HDAC8-217ENST00000478743 NUP160Q12769 1436 aa23.43■■□□□ 1.34
HDAC8-217ENST00000478743 ADAMTS12P58397 1594 aa23.42■■□□□ 1.34
HDAC8-217ENST00000478743 ABCC10Q5T3U5 1492 aa23.41■■□□□ 1.34
HDAC8-217ENST00000478743 FAM69CQ0P6D2 419 aa23.36■■□□□ 1.33
HDAC8-217ENST00000478743 ABCA10Q8WWZ4 1543 aa23.36■■□□□ 1.33
HDAC8-217ENST00000478743 TSPOAP1O95153 1857 aa23.36■■□□□ 1.33
HDAC8-217ENST00000478743 MAPKBP1O60336 1514 aa23.31■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms