RNA–Protein interactions for RNA: ENST00000220888.9

TRPS1-201, Transcript of transcriptional repressor GATA binding 1, humanhuman

TSL 1 (best) BASIC

Gene TRPS1, Length 5,480 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRPS1-201ENST00000220888 DCAF8L2P0C7V8 631 aa18.61■□□□□ 0.57
TRPS1-201ENST00000220888 SUPT5HO00267 1087 aaKnown RBP17.14■□□□□ 0.34
TRPS1-201ENST00000220888 FAM9AQ8IZU1 332 aaPredicted RBP16.97■□□□□ 0.31
TRPS1-201ENST00000220888 EHMT2Q96KQ7 1210 aa16.86■□□□□ 0.29
TRPS1-201ENST00000220888 APLP2Q06481 763 aa16.81■□□□□ 0.28
TRPS1-201ENST00000220888 SHROOM4Q9ULL8 1493 aa16.7■□□□□ 0.26
TRPS1-201ENST00000220888 PELP1Q8IZL8 1130 aaKnown RBP16.66■□□□□ 0.26
TRPS1-201ENST00000220888 NISCHQ9Y2I1 1504 aa16.39■□□□□ 0.21
TRPS1-201ENST00000220888 ATP1B4Q9UN42 357 aaPredicted RBP16.3■□□□□ 0.2
TRPS1-201ENST00000220888 RANGAP1P46060 587 aaPredicted RBP16.26■□□□□ 0.19
TRPS1-201ENST00000220888 TTBK1Q5TCY1 1321 aaPredicted RBP16.25■□□□□ 0.19
TRPS1-201ENST00000220888 MYT1LQ9UL68 1186 aa16■□□□□ 0.15
TRPS1-201ENST00000220888 ERICH6Q7L0X2 663 aa15.96■□□□□ 0.15
TRPS1-201ENST00000220888 CCER1Q8TC90 406 aaPredicted RBP15.96■□□□□ 0.15
TRPS1-201ENST00000220888 PCGF6Q9BYE7 350 aa15.94■□□□□ 0.14
TRPS1-201ENST00000220888 UBTFP17480 764 aaKnown RBP15.92■□□□□ 0.14
TRPS1-201ENST00000220888 TRIM41Q8WV44 630 aa15.89■□□□□ 0.13
TRPS1-201ENST00000220888 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.8■□□□□ 0.12
TRPS1-201ENST00000220888 HNRNPUL2Q1KMD3 747 aaKnown RBP15.8■□□□□ 0.12
TRPS1-201ENST00000220888 CENPBP07199 599 aaPredicted RBP15.72■□□□□ 0.11
TRPS1-201ENST00000220888 NEFLP07196 543 aa15.69■□□□□ 0.1
TRPS1-201ENST00000220888 CHIC1Q5VXU3 224 aa15.63■□□□□ 0.09
TRPS1-201ENST00000220888 ZEB1P37275 1124 aaPredicted RBP15.61■□□□□ 0.09
TRPS1-201ENST00000220888 POLR3GLQ9BT43 218 aa15.57■□□□□ 0.08
TRPS1-201ENST00000220888 SLC4A1APQ9BWU0 796 aaKnown RBP15.5■□□□□ 0.07
TRPS1-201ENST00000220888 ITGAEP38570 1179 aa15.45■□□□□ 0.06
TRPS1-201ENST00000220888 DAXXQ9UER7 740 aaPredicted RBP15.44■□□□□ 0.06
TRPS1-201ENST00000220888 YTHDC1Q96MU7 727 aaKnown RBP15.39■□□□□ 0.05
TRPS1-201ENST00000220888 PPARGC1BQ86YN6 1023 aaKnown RBP15.33■□□□□ 0.04
TRPS1-201ENST00000220888 CNGB1Q14028 1251 aaPredicted RBP15.32■□□□□ 0.04
TRPS1-201ENST00000220888 FBLN2P98095 1184 aa15.13■□□□□ 0.01
TRPS1-201ENST00000220888 CLSPNQ9HAW4 1339 aa15.13■□□□□ 0.01
TRPS1-201ENST00000220888 BCANQ96GW7 911 aa15.11■□□□□ 0.01
TRPS1-201ENST00000220888 TRIM52Q96A61 297 aa15.07■□□□□ 0
TRPS1-201ENST00000220888 SLC24A1O60721 1099 aa15.06■□□□□ 0
TRPS1-201ENST00000220888 FAM50AQ14320 339 aaKnown RBP15.03■□□□□ -0
TRPS1-201ENST00000220888 ZBTB47Q9UFB7 747 aaPredicted RBP15.02□□□□□ -0.01
TRPS1-201ENST00000220888 PABPN1Q86U42 306 aaKnown RBP eCLIP14.99□□□□□ -0.01
TRPS1-201ENST00000220888 ZNF316A6NFI3 1004 aaPredicted RBP14.99□□□□□ -0.01
TRPS1-201ENST00000220888 TRIM26Q12899 539 aaPredicted RBP14.99□□□□□ -0.01
TRPS1-201ENST00000220888 MYT1Q01538 1121 aa14.98□□□□□ -0.01
TRPS1-201ENST00000220888 ESF1Q9H501 851 aaKnown RBP14.97□□□□□ -0.01
TRPS1-201ENST00000220888 NEFMP07197 916 aa14.92□□□□□ -0.02
TRPS1-201ENST00000220888 ZNF326Q5BKZ1 582 aaKnown RBP14.91□□□□□ -0.02
TRPS1-201ENST00000220888 ABCC9O60706 1549 aa14.84□□□□□ -0.03
TRPS1-201ENST00000220888 PLPPR3Q6T4P5 718 aa14.82□□□□□ -0.04
TRPS1-201ENST00000220888 NEUROD1Q13562 356 aa14.8□□□□□ -0.04
TRPS1-201ENST00000220888 BCL11AQ9H165 835 aa14.8□□□□□ -0.04
TRPS1-201ENST00000220888 RTL5Q5HYW3 569 aaPredicted RBP14.79□□□□□ -0.04
TRPS1-201ENST00000220888 NPM1P06748 294 aaKnown RBP eCLIP14.78□□□□□ -0.04
TRPS1-201ENST00000220888 STAG3Q9UJ98 1225 aa14.78□□□□□ -0.04
TRPS1-201ENST00000220888 CANXP27824 592 aaKnown RBP14.76□□□□□ -0.05
TRPS1-201ENST00000220888 LOC105371045A0A1W2PR82 267 aa14.76□□□□□ -0.05
TRPS1-201ENST00000220888 ARID3CA6NKF2 412 aa14.73□□□□□ -0.05
TRPS1-201ENST00000220888 HRCP23327 699 aa14.72□□□□□ -0.05
TRPS1-201ENST00000220888 ZNF777Q9ULD5 760 aaPredicted RBP14.7□□□□□ -0.06
TRPS1-201ENST00000220888 CDK11AQ9UQ88 783 aaPredicted RBP14.67□□□□□ -0.06
TRPS1-201ENST00000220888 CHGAP10645 457 aaKnown RBP14.66□□□□□ -0.06
TRPS1-201ENST00000220888 ANP32CO43423 234 aa14.62□□□□□ -0.07
TRPS1-201ENST00000220888 P3H3Q8IVL6 736 aa14.62□□□□□ -0.07
TRPS1-201ENST00000220888 SCAF1Q9H7N4 1312 aaKnown RBP14.56□□□□□ -0.08
TRPS1-201ENST00000220888 A0A0G2JS52 829 aa14.55□□□□□ -0.08
TRPS1-201ENST00000220888 DIEXFQ68CQ4 756 aaKnown RBP14.52□□□□□ -0.09
TRPS1-201ENST00000220888 NPM2Q86SE8 214 aaKnown RBP14.49□□□□□ -0.09
TRPS1-201ENST00000220888 C14orf37Q86TY3 774 aa14.39□□□□□ -0.11
TRPS1-201ENST00000220888 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.37□□□□□ -0.11
TRPS1-201ENST00000220888 HAP1P54257 671 aaPredicted RBP14.35□□□□□ -0.11
TRPS1-201ENST00000220888 HSP90AA1P07900 732 aaKnown RBP14.35□□□□□ -0.11
TRPS1-201ENST00000220888 ZBTB7CA1YPR0 619 aa14.35□□□□□ -0.11
TRPS1-201ENST00000220888 PLEKHG5O94827 1062 aa14.33□□□□□ -0.12
TRPS1-201ENST00000220888 PPP1R15AO75807 674 aaPredicted RBP14.32□□□□□ -0.12
TRPS1-201ENST00000220888 CSRNP3Q8WYN3 585 aa14.31□□□□□ -0.12
TRPS1-201ENST00000220888 CHMP7Q8WUX9 453 aaPredicted RBP14.3□□□□□ -0.12
TRPS1-201ENST00000220888 TSPY4P0CV99 314 aa14.29□□□□□ -0.12
TRPS1-201ENST00000220888 TSPY10P0CW01 314 aa14.29□□□□□ -0.12
TRPS1-201ENST00000220888 ARID4BQ4LE39 1312 aaPredicted RBP14.29□□□□□ -0.12
TRPS1-201ENST00000220888 ANP32BQ92688 251 aaKnown RBP14.28□□□□□ -0.12
TRPS1-201ENST00000220888 CDK11BP21127 795 aaKnown RBP14.28□□□□□ -0.12
TRPS1-201ENST00000220888 UPF2Q9HAU5 1272 aaKnown RBP14.26□□□□□ -0.13
TRPS1-201ENST00000220888 ANP32AP39687 249 aaKnown RBP14.24□□□□□ -0.13
TRPS1-201ENST00000220888 TONSLQ96HA7 1378 aa14.24□□□□□ -0.13
TRPS1-201ENST00000220888 CHIC2Q9UKJ5 165 aa14.19□□□□□ -0.14
TRPS1-201ENST00000220888 WDR43Q15061 677 aaKnown RBP eCLIP14.18□□□□□ -0.14
TRPS1-201ENST00000220888 SENP3Q9H4L4 574 aaPredicted RBP14.18□□□□□ -0.14
TRPS1-201ENST00000220888 ARXQ96QS3 562 aa14.18□□□□□ -0.14
TRPS1-201ENST00000220888 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.17□□□□□ -0.14
TRPS1-201ENST00000220888 KCNH8Q96L42 1107 aa14.17□□□□□ -0.14
TRPS1-201ENST00000220888 MYH16Q9H6N6 1097 aa14.15□□□□□ -0.14
TRPS1-201ENST00000220888 KDM2AQ9Y2K7 1162 aa14.15□□□□□ -0.14
TRPS1-201ENST00000220888 SALL2Q9Y467 1007 aaPredicted RBP14.15□□□□□ -0.14
TRPS1-201ENST00000220888 NPHP1O15259 732 aa14.12□□□□□ -0.15
TRPS1-201ENST00000220888 TMC1Q8TDI8 760 aa14.12□□□□□ -0.15
TRPS1-201ENST00000220888 TRHP20396 242 aaPredicted RBP14.11□□□□□ -0.15
TRPS1-201ENST00000220888 FAM9BQ8IZU0 186 aa14.1□□□□□ -0.15
TRPS1-201ENST00000220888 LMOD2Q6P5Q4 547 aa14.09□□□□□ -0.15
TRPS1-201ENST00000220888 PLEKHD1A6NEE1 506 aa14.06□□□□□ -0.16
TRPS1-201ENST00000220888 MTUS2Q5JR59 1369 aa14.06□□□□□ -0.16
TRPS1-201ENST00000220888 SCRIBQ14160 1630 aa14.05□□□□□ -0.16
TRPS1-201ENST00000220888 HNRNPUQ00839 825 aaKnown RBP eCLIP14.05□□□□□ -0.16
TRPS1-201ENST00000220888 GTF3C3Q9Y5Q9 886 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms