Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.121e-9■■■■□ 25.5
DDX55Q8NHQ9 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.081e-9■■■■□ 25.5
DDX55Q8NHQ9 STARD8-205ENST00000523864 4864 ntTSL 1 (best)15.56■□□□□ 0.081e-9■■■■□ 25.5
DDX55Q8NHQ9 STARD8-203ENST00000374599 4841 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.141e-9■■■■□ 25.5
DDX55Q8NHQ9 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC22.21■■□□□ 1.153e-7■■■■□ 25.5
DDX55Q8NHQ9 TNFRSF1A-209ENST00000536717 1503 ntTSL 221.94■■□□□ 1.13e-7■■■■□ 25.5
DDX55Q8NHQ9 TNFRSF1A-216ENST00000543995 1531 ntTSL 517.21■□□□□ 0.353e-7■■■■□ 25.5
DDX55Q8NHQ9 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.432e-6■■■■□ 25.5
DDX55Q8NHQ9 KRT19-204ENST00000468880 868 ntTSL 219.2■□□□□ 0.662e-6■■■■□ 25.5
DDX55Q8NHQ9 KRT19-207ENST00000593096 728 ntTSL 319.13■□□□□ 0.652e-6■■■■□ 25.5
DDX55Q8NHQ9 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.036e-7■■■■□ 25.3
DDX55Q8NHQ9 SCAMP5-203ENST00000562212 3400 ntTSL 1 (best) BASIC13.07□□□□□ -0.326e-7■■■■□ 25.3
DDX55Q8NHQ9 SCAMP5-201ENST00000361900 3427 ntAPPRIS P1 TSL 2 BASIC11.47□□□□□ -0.576e-7■■■■□ 25.3
DDX55Q8NHQ9 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC22.98■■□□□ 1.272e-10■■■■□ 25.3
DDX55Q8NHQ9 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC22.47■■□□□ 1.192e-10■■■■□ 25.3
DDX55Q8NHQ9 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.792e-10■■■■□ 25.3
DDX55Q8NHQ9 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.392e-10■■■■□ 25.3
DDX55Q8NHQ9 HLA-E-201ENST00000376630 2601 ntAPPRIS P1 BASIC14.52□□□□□ -0.098e-9■■■■□ 25.3
DDX55Q8NHQ9 GTF3C5-210ENST00000489842 696 ntTSL 211.36□□□□□ -0.593e-14■■■■□ 25.3
DDX55Q8NHQ9 ANP32A-207ENST00000486054 2015 ntTSL 219.08■□□□□ 0.641e-6■■■■□ 25.3
DDX55Q8NHQ9 ANP32A-201ENST00000267918 1084 ntTSL 318.26■□□□□ 0.511e-6■■■■□ 25.3
DDX55Q8NHQ9 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.471e-6■■■■□ 25.3
DDX55Q8NHQ9 ANP32A-202ENST00000409628 2001 ntTSL 516.75■□□□□ 0.271e-6■■■■□ 25.3
DDX55Q8NHQ9 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC24.02■■□□□ 1.442e-6■■■■□ 25.3
DDX55Q8NHQ9 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.372e-6■■■■□ 25.3
DDX55Q8NHQ9 SUPT4H1-205ENST00000581166 1401 ntTSL 217.24■□□□□ 0.352e-6■■■■□ 25.3
DDX55Q8NHQ9 MPG-202ENST00000356432 1205 ntAPPRIS ALT2 TSL 1 (best)23.34■■□□□ 1.336e-10■■■■□ 25.2
DDX55Q8NHQ9 MPG-205ENST00000475280 510 ntTSL 223.21■■□□□ 1.316e-10■■■■□ 25.2
DDX55Q8NHQ9 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC22.6■■□□□ 1.216e-10■■■■□ 25.2
DDX55Q8NHQ9 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC22.47■■□□□ 1.196e-10■■■■□ 25.2
DDX55Q8NHQ9 MPG-204ENST00000436333 884 ntTSL 220.72■□□□□ 0.916e-10■■■■□ 25.2
DDX55Q8NHQ9 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC20.68■□□□□ 0.95e-7■■■■□ 25.2
DDX55Q8NHQ9 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.485e-7■■■■□ 25.2
DDX55Q8NHQ9 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC18.04■□□□□ 0.485e-7■■■■□ 25.2
DDX55Q8NHQ9 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.326e-10■■■■□ 25.2
DDX55Q8NHQ9 PSME1-208ENST00000561059 947 ntTSL 216.75■□□□□ 0.273e-7■■■■□ 25.2
DDX55Q8NHQ9 PSME1-209ENST00000561142 865 ntTSL 516.75■□□□□ 0.275e-7■■■■□ 25.2
DDX55Q8NHQ9 PSME1-210ENST00000561435 945 ntTSL 2 BASIC14.26□□□□□ -0.135e-7■■■■□ 25.2
DDX55Q8NHQ9 DDX5-210ENST00000578804 2021 ntTSL 1 (best) BASIC13.61□□□□□ -0.236e-10■■■■□ 25.2
DDX55Q8NHQ9 DDX5-218ENST00000581693 2156 ntTSL 512.8□□□□□ -0.366e-10■■■■□ 25.2
DDX55Q8NHQ9 DDX5-203ENST00000540698 2225 ntTSL 512.44□□□□□ -0.426e-10■■■■□ 25.2
DDX55Q8NHQ9 DDX5-202ENST00000450599 2077 ntTSL 2 BASIC11.67□□□□□ -0.546e-10■■■■□ 25.2
DDX55Q8NHQ9 DDX5-209ENST00000578758 667 ntTSL 211.43□□□□□ -0.586e-10■■■■□ 25.2
DDX55Q8NHQ9 DDX5-213ENST00000579996 820 ntTSL 211.19□□□□□ -0.626e-10■■■■□ 25.2
DDX55Q8NHQ9 DDX5-215ENST00000581230 3558 ntTSL 28.69□□□□□ -1.026e-10■■■■□ 25.2
DDX55Q8NHQ9 DDX5-208ENST00000578491 463 ntTSL 27.94□□□□□ -1.146e-10■■■■□ 25.2
DDX55Q8NHQ9 DDX5-212ENST00000579461 814 ntTSL 36.5□□□□□ -1.376e-10■■■■□ 25.2
DDX55Q8NHQ9 DDX5-234ENST00000585317 923 ntTSL 24□□□□□ -1.776e-10■■■■□ 25.2
DDX55Q8NHQ9 PSME1-203ENST00000470718 476 ntTSL 33.74□□□□□ -1.814e-14■■■■□ 25.2
DDX55Q8NHQ9 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC18.77■□□□□ 0.62e-7■■■■□ 25.2
DDX55Q8NHQ9 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.492e-7■■■■□ 25.2
DDX55Q8NHQ9 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.422e-7■■■■□ 25.2
DDX55Q8NHQ9 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC16.76■□□□□ 0.272e-7■■■■□ 25.2
DDX55Q8NHQ9 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.232e-7■■■■□ 25.2
DDX55Q8NHQ9 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.087e-66■■■■□ 25.2
DDX55Q8NHQ9 SNRNP70-204ENST00000595231 1673 ntTSL 1 (best)26.84■■□□□ 1.897e-66■■■■□ 25.2
DDX55Q8NHQ9 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC26.83■■□□□ 1.887e-66■■■■□ 25.2
DDX55Q8NHQ9 SNRNP70-209ENST00000601065 1757 ntTSL 325.77■■□□□ 1.727e-66■■■■□ 25.2
DDX55Q8NHQ9 SNRNP70-202ENST00000401730 3144 ntTSL 217.69■□□□□ 0.427e-66■■■■□ 25.2
DDX55Q8NHQ9 SNRNP70-203ENST00000544278 3221 ntTSL 1 (best)16.75■□□□□ 0.277e-66■■■■□ 25.2
DDX55Q8NHQ9 PUM1-201ENST00000257075 5360 ntAPPRIS P3 TSL 1 (best) BASIC11.21□□□□□ -0.628e-9■■■■□ 25
DDX55Q8NHQ9 PUM1-204ENST00000373747 5375 ntAPPRIS ALT1 TSL 5 BASIC9.43□□□□□ -0.98e-9■■■■□ 25
DDX55Q8NHQ9 PUM1-205ENST00000424085 4631 ntTSL 5 BASIC8.48□□□□□ -1.058e-9■■■■□ 25
DDX55Q8NHQ9 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.541e-14■■■■□ 25
DDX55Q8NHQ9 PRPF19-202ENST00000535326 779 ntTSL 514.34□□□□□ -0.111e-14■■■■□ 25
DDX55Q8NHQ9 PRPF19-205ENST00000540473 169 ntTSL 58.3□□□□□ -1.081e-14■■■■□ 25
DDX55Q8NHQ9 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.013e-10■■■■□ 25
DDX55Q8NHQ9 MMP11-204ENST00000437086 2071 ntTSL 220.98■□□□□ 0.953e-10■■■■□ 25
DDX55Q8NHQ9 MMP11-206ENST00000465385 3823 ntTSL 214.06□□□□□ -0.163e-10■■■■□ 25
DDX55Q8NHQ9 RNA5SP359-201ENST00000364838 113 ntBASIC17.27■□□□□ 0.362e-7■■■■□ 24.9
DDX55Q8NHQ9 ELMO2-201ENST00000290246 3669 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.063e-8■■■■□ 24.9
DDX55Q8NHQ9 ELMO2-204ENST00000396391 3574 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.263e-8■■■■□ 24.9
DDX55Q8NHQ9 ELMO2-207ENST00000452857 2158 ntTSL 512.36□□□□□ -0.433e-8■■■■□ 24.9
DDX55Q8NHQ9 ELMO2-212ENST00000467800 4121 ntTSL 1 (best)9.15□□□□□ -0.943e-8■■■■□ 24.9
DDX55Q8NHQ9 ELMO2-203ENST00000372176 3678 ntTSL 5 BASIC7.58□□□□□ -1.23e-8■■■■□ 24.9
DDX55Q8NHQ9 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC15.3■□□□□ 0.044e-9■■■■□ 24.9
DDX55Q8NHQ9 TTLL4-202ENST00000392102 4967 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.674e-9■■■■□ 24.9
DDX55Q8NHQ9 TTLL4-201ENST00000258398 4730 ntAPPRIS P1 TSL 2 BASIC9.89□□□□□ -0.834e-9■■■■□ 24.9
DDX55Q8NHQ9 TTLL4-210ENST00000442769 3971 ntTSL 5 BASIC8.51□□□□□ -1.054e-9■■■■□ 24.9
DDX55Q8NHQ9 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.591e-7■■■■□ 24.9
DDX55Q8NHQ9 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC26.61■■□□□ 1.851e-23■■■■□ 24.8
DDX55Q8NHQ9 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC21.26■□□□□ 0.991e-23■■■■□ 24.8
DDX55Q8NHQ9 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC21.26■□□□□ 0.991e-23■■■■□ 24.8
DDX55Q8NHQ9 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.781e-23■■■■□ 24.8
DDX55Q8NHQ9 PYCR2-206ENST00000478402 3149 ntTSL 215.99■□□□□ 0.151e-23■■■■□ 24.8
DDX55Q8NHQ9 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC24.49■■□□□ 1.512e-18■■■■□ 24.7
DDX55Q8NHQ9 AL162258.1-203ENST00000472233 637 ntTSL 317.62■□□□□ 0.412e-18■■■■□ 24.7
DDX55Q8NHQ9 S100A13-206ENST00000491177 2184 ntTSL 217.26■□□□□ 0.352e-18■■■■□ 24.7
DDX55Q8NHQ9 S100A13-205ENST00000476133 710 ntTSL 1 (best)11.64□□□□□ -0.552e-18■■■■□ 24.7
DDX55Q8NHQ9 S100A13-201ENST00000339556 514 ntAPPRIS P1 TSL 2 BASIC10.21□□□□□ -0.772e-18■■■■□ 24.7
DDX55Q8NHQ9 S100A13-204ENST00000440685 686 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.962e-18■■■■□ 24.7
DDX55Q8NHQ9 AL162258.1-202ENST00000484413 508 ntTSL 25.68□□□□□ -1.52e-18■■■■□ 24.7
DDX55Q8NHQ9 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.138e-7■■■■□ 24.6
DDX55Q8NHQ9 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.048e-7■■■■□ 24.6
DDX55Q8NHQ9 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.413e-9■■■■□ 24.6
DDX55Q8NHQ9 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.334e-7■■■■□ 24.6
DDX55Q8NHQ9 PCNA-201ENST00000379143 1344 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.134e-7■■■■□ 24.6
DDX55Q8NHQ9 ZC3H18-201ENST00000301011 3729 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.121e-12■■■■□ 24.6
DDX55Q8NHQ9 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.665e-8■■■■□ 24.5
DDX55Q8NHQ9 LAMB2-217ENST00000498377 1021 ntTSL 220.41■□□□□ 0.862e-7■■■■□ 24.5
Retrieved 100 of 15,504 protein–RNA pairs in 31.7 ms