RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 NISCHQ9Y2I1 1504 aa44.43■■■■■ 4.7
TNFRSF1A-213ENST00000540022 CCDC180Q9P1Z9 1646 aa39.34■■■■□ 3.89
TNFRSF1A-213ENST00000540022 ABCC9O60706 1549 aa38.75■■■■□ 3.79
TNFRSF1A-213ENST00000540022 ZCCHC6Q5VYS8 1495 aaKnown RBP37.18■■■■□ 3.54
TNFRSF1A-213ENST00000540022 RB1CC1Q8TDY2 1594 aa37.14■■■■□ 3.54
TNFRSF1A-213ENST00000540022 DCAF8L2P0C7V8 631 aa37.05■■■■□ 3.52
TNFRSF1A-213ENST00000540022 NACADO15069 1562 aa37.02■■■■□ 3.52
TNFRSF1A-213ENST00000540022 DCAF1Q9Y4B6 1507 aa36.74■■■■□ 3.47
TNFRSF1A-213ENST00000540022 MYO15BQ96JP2 1530 aa36.7■■■■□ 3.47
TNFRSF1A-213ENST00000540022 UNC13AQ9UPW8 1703 aa36.45■■■■□ 3.43
TNFRSF1A-213ENST00000540022 PABPN1Q86U42 306 aaKnown RBP eCLIP36.13■■■■□ 3.37
TNFRSF1A-213ENST00000540022 BICRAQ9NZM4 1560 aa36.09■■■■□ 3.37
TNFRSF1A-213ENST00000540022 SCRIBQ14160 1630 aa35.94■■■■□ 3.34
TNFRSF1A-213ENST00000540022 DNAJC5BQ9UF47 199 aa35.87■■■■□ 3.33
TNFRSF1A-213ENST00000540022 SHROOM4Q9ULL8 1493 aa35.69■■■■□ 3.3
TNFRSF1A-213ENST00000540022 EIF4G1Q04637 1599 aaKnown RBP35.13■■■■□ 3.21
TNFRSF1A-213ENST00000540022 CC2D2AQ9P2K1 1620 aa35.08■■■■□ 3.21
TNFRSF1A-213ENST00000540022 CECR2Q9BXF3 1484 aa34.83■■■■□ 3.17
TNFRSF1A-213ENST00000540022 SMARCA4P51532 1647 aa34.36■■■■□ 3.09
TNFRSF1A-213ENST00000540022 BAZ1AQ9NRL2 1556 aaPredicted RBP34.36■■■■□ 3.09
TNFRSF1A-213ENST00000540022 MROH2BQ7Z745 1585 aa34.31■■■■□ 3.08
TNFRSF1A-213ENST00000540022 RSF1Q96T23 1441 aaPredicted RBP34.19■■■■□ 3.06
TNFRSF1A-213ENST00000540022 NCAPD3P42695 1498 aa34.15■■■■□ 3.06
TNFRSF1A-213ENST00000540022 ATAD2BQ9ULI0 1458 aa34.14■■■■□ 3.06
TNFRSF1A-213ENST00000540022 SMARCA2P51531 1590 aa34.07■■■■□ 3.04
TNFRSF1A-213ENST00000540022 SUPT5HO00267 1087 aaKnown RBP33.99■■■■□ 3.03
TNFRSF1A-213ENST00000540022 PEG3Q9GZU2 1588 aa33.98■■■■□ 3.03
TNFRSF1A-213ENST00000540022 HMGXB3Q12766 1538 aa33.98■■■■□ 3.03
TNFRSF1A-213ENST00000540022 WIZO95785 1651 aa33.95■■■■□ 3.02
TNFRSF1A-213ENST00000540022 BAZ1BQ9UIG0 1483 aaKnown RBP33.82■■■■□ 3
TNFRSF1A-213ENST00000540022 TOP2AP11388 1531 aaKnown RBP33.59■■■□□ 2.97
TNFRSF1A-213ENST00000540022 NESP48681 1621 aa33.47■■■□□ 2.95
TNFRSF1A-213ENST00000540022 ERCC6Q03468 1493 aa33.38■■■□□ 2.93
TNFRSF1A-213ENST00000540022 LAMC3Q9Y6N6 1575 aa33.33■■■□□ 2.93
TNFRSF1A-213ENST00000540022 CCDC88BA6NC98 1476 aa33.24■■■□□ 2.91
TNFRSF1A-213ENST00000540022 CUX2O14529 1486 aa33.16■■■□□ 2.9
TNFRSF1A-213ENST00000540022 CADPSQ9ULU8 1353 aa33.13■■■□□ 2.89
TNFRSF1A-213ENST00000540022 KIF21AQ7Z4S6 1674 aa33.12■■■□□ 2.89
TNFRSF1A-213ENST00000540022 PDS5BQ9NTI5 1447 aa33.06■■■□□ 2.88
TNFRSF1A-213ENST00000540022 THOC2Q8NI27 1593 aaKnown RBP33.06■■■□□ 2.88
TNFRSF1A-213ENST00000540022 CFTRP13569 1480 aa32.93■■■□□ 2.86
TNFRSF1A-213ENST00000540022 FANCD2Q9BXW9 1451 aa32.76■■■□□ 2.83
TNFRSF1A-213ENST00000540022 MRC2Q9UBG0 1479 aa32.76■■■□□ 2.83
TNFRSF1A-213ENST00000540022 CEP164Q9UPV0 1460 aa32.75■■■□□ 2.83
TNFRSF1A-213ENST00000540022 PRDM2Q13029 1718 aa32.73■■■□□ 2.83
TNFRSF1A-213ENST00000540022 WDR62O43379 1518 aa32.7■■■□□ 2.83
TNFRSF1A-213ENST00000540022 DNAJC5Q9H3Z4 198 aa32.5■■■□□ 2.79
TNFRSF1A-213ENST00000540022 URB2Q14146 1524 aaKnown RBP32.48■■■□□ 2.79
TNFRSF1A-213ENST00000540022 ABCC8Q09428 1581 aa32.28■■■□□ 2.76
TNFRSF1A-213ENST00000540022 TOPBP1Q92547 1522 aa32.22■■■□□ 2.75
TNFRSF1A-213ENST00000540022 WRNQ14191 1432 aaPredicted RBP eCLIP32.2■■■□□ 2.75
TNFRSF1A-213ENST00000540022 CHIC1Q5VXU3 224 aa32.19■■■□□ 2.74
TNFRSF1A-213ENST00000540022 DNMBPQ6XZF7 1577 aa32.16■■■□□ 2.74
TNFRSF1A-213ENST00000540022 CUX1P39880 1505 aa32.15■■■□□ 2.74
TNFRSF1A-213ENST00000540022 SYNJ1O43426 1573 aa32.06■■■□□ 2.72
TNFRSF1A-213ENST00000540022 IFT140Q96RY7 1462 aa32.06■■■□□ 2.72
TNFRSF1A-213ENST00000540022 TRIM41Q8WV44 630 aa32.02■■■□□ 2.72
TNFRSF1A-213ENST00000540022 ZNF608Q9ULD9 1512 aaPredicted RBP31.99■■■□□ 2.71
TNFRSF1A-213ENST00000540022 TOP2BQ02880 1626 aa31.99■■■□□ 2.71
TNFRSF1A-213ENST00000540022 POLA1P09884 1462 aaPredicted RBP31.96■■■□□ 2.71
TNFRSF1A-213ENST00000540022 BIVM-ERCC5R4GMW8 1640 aa31.95■■■□□ 2.71
TNFRSF1A-213ENST00000540022 FGD5Q6ZNL6 1462 aa31.94■■■□□ 2.7
TNFRSF1A-213ENST00000540022 TARBP1Q13395 1621 aaKnown RBP31.93■■■□□ 2.7
TNFRSF1A-213ENST00000540022 RAD54L2Q9Y4B4 1467 aa31.88■■■□□ 2.69
TNFRSF1A-213ENST00000540022 EIF4G3O43432 1585 aaKnown RBP31.86■■■□□ 2.69
TNFRSF1A-213ENST00000540022 SOGA1O94964 1423 aa31.83■■■□□ 2.69
TNFRSF1A-213ENST00000540022 AQRO60306 1485 aaKnown RBP eCLIP31.75■■■□□ 2.672e-6■■■■■ 30
TNFRSF1A-213ENST00000540022 OSCARQ8IYS5 282 aa31.7■■■□□ 2.66
TNFRSF1A-213ENST00000540022 TDRD9Q8NDG6 1382 aaKnown RBP31.65■■■□□ 2.66
TNFRSF1A-213ENST00000540022 WDR97A6NE52 1622 aa31.63■■■□□ 2.65
TNFRSF1A-213ENST00000540022 ABCA10Q8WWZ4 1543 aa31.62■■■□□ 2.65
TNFRSF1A-213ENST00000540022 CHD1O14646 1710 aa31.57■■■□□ 2.64
TNFRSF1A-213ENST00000540022 RUSC2Q8N2Y8 1516 aa31.48■■■□□ 2.63
TNFRSF1A-213ENST00000540022 ABCA5Q8WWZ7 1642 aa31.45■■■□□ 2.63
TNFRSF1A-213ENST00000540022 GAPVD1Q14C86 1478 aa31.45■■■□□ 2.63
TNFRSF1A-213ENST00000540022 KIF27Q86VH2 1401 aa31.45■■■□□ 2.62
TNFRSF1A-213ENST00000540022 SNAPC4Q5SXM2 1469 aa31.44■■■□□ 2.62
TNFRSF1A-213ENST00000540022 PBRM1Q86U86 1689 aa31.44■■■□□ 2.62
TNFRSF1A-213ENST00000540022 GRIN2BQ13224 1484 aa31.42■■■□□ 2.62
TNFRSF1A-213ENST00000540022 FAM9AQ8IZU1 332 aaPredicted RBP31.4■■■□□ 2.62
TNFRSF1A-213ENST00000540022 MAGI1Q96QZ7 1491 aaPredicted RBP31.39■■■□□ 2.62
TNFRSF1A-213ENST00000540022 FBLN2P98095 1184 aa31.37■■■□□ 2.61
TNFRSF1A-213ENST00000540022 EEA1Q15075 1411 aa31.35■■■□□ 2.61
TNFRSF1A-213ENST00000540022 RIMBP3CA6NJZ7 1639 aa31.32■■■□□ 2.6
TNFRSF1A-213ENST00000540022 RIMBP3BA6NNM3 1639 aa31.32■■■□□ 2.6
TNFRSF1A-213ENST00000540022 RIMBP3Q9UFD9 1639 aa31.32■■■□□ 2.6
TNFRSF1A-213ENST00000540022 SYNJ2O15056 1496 aa31.26■■■□□ 2.6
TNFRSF1A-213ENST00000540022 CSRNP3Q8WYN3 585 aa31.26■■■□□ 2.59
TNFRSF1A-213ENST00000540022 IGF1RP08069 1367 aa31.26■■■□□ 2.59
TNFRSF1A-213ENST00000540022 ARHGEF11O15085 1522 aa31.25■■■□□ 2.59
TNFRSF1A-213ENST00000540022 CHMP7Q8WUX9 453 aaPredicted RBP31.24■■■□□ 2.59
TNFRSF1A-213ENST00000540022 ERICH3Q5RHP9 1530 aa31.22■■■□□ 2.59
TNFRSF1A-213ENST00000540022 CLASP1Q7Z460 1538 aa31.17■■■□□ 2.58
TNFRSF1A-213ENST00000540022 ADAMTS12P58397 1594 aa31.13■■■□□ 2.57
TNFRSF1A-213ENST00000540022 FHAD1B1AJZ9 1412 aa31.09■■■□□ 2.57
TNFRSF1A-213ENST00000540022 CARMIL1Q5VZK9 1371 aa31.08■■■□□ 2.57
TNFRSF1A-213ENST00000540022 PRXQ9BXM0 1461 aa31.07■■■□□ 2.56
TNFRSF1A-213ENST00000540022 GRIN2AQ12879 1464 aa31.05■■■□□ 2.56
TNFRSF1A-213ENST00000540022 CUL7Q14999 1698 aa31.01■■■□□ 2.56
TNFRSF1A-213ENST00000540022 ARAP1Q96P48 1450 aa30.98■■■□□ 2.55
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms