Protein–RNA interactions for Protein: P23246

SFPQ, Splicing factor, proline- and glutamine-rich, humanhuman

Known RBP eCLIP

Length 707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SFPQP23246 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.731e-6■■■□□ 17.2
SFPQP23246 ACTN4-211ENST00000589528 441 ntTSL 217.18■□□□□ 0.341e-6■■■□□ 17.2
SFPQP23246 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC15.72■□□□□ 0.111e-6■■■□□ 17.2
SFPQP23246 ACTN4-207ENST00000495553 586 ntTSL 510.4□□□□□ -0.741e-6■■■□□ 17.2
SFPQP23246 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC17.94■□□□□ 0.463e-6■■■□□ 17.2
SFPQP23246 TBCD-201ENST00000355528 7168 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.363e-6■■■□□ 17.2
SFPQP23246 MTSS1-218ENST00000529463 569 ntTSL 410.28□□□□□ -0.766e-6■■■□□ 17.2
SFPQP23246 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.644e-7■■■□□ 17.2
SFPQP23246 LARP1-211ENST00000521577 817 ntTSL 527.26■■□□□ 1.952e-6■■■□□ 17.2
SFPQP23246 LARP1-204ENST00000518297 2630 ntTSL 523.81■■□□□ 1.42e-6■■■□□ 17.2
SFPQP23246 LARP1-208ENST00000518892 399 ntTSL 323.62■■□□□ 1.372e-6■■■□□ 17.2
SFPQP23246 LARP1-201ENST00000336314 6595 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.262e-6■■■□□ 17.2
SFPQP23246 LARP1-210ENST00000519931 569 ntTSL 48.16□□□□□ -1.12e-6■■■□□ 17.2
SFPQP23246 LARP1-202ENST00000517616 501 ntTSL 53.87□□□□□ -1.792e-6■■■□□ 17.2
SFPQP23246 SHANK2-216ENST00000482659 381 ntTSL 35.05□□□□□ -1.61e-6■■■□□ 17.2
SFPQP23246 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.453e-6■■■□□ 17.2
SFPQP23246 BMP4-202ENST00000417573 1784 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.217e-7■■■□□ 17.1
SFPQP23246 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.691e-6■■■□□ 17.1
SFPQP23246 SMAD3-211ENST00000559460 568 ntTSL 410.97□□□□□ -0.651e-6■■■□□ 17.1
SFPQP23246 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.673e-6■■■□□ 17.1
SFPQP23246 TAF4-207ENST00000608887 284 ntTSL 410.43□□□□□ -0.741e-6■■■□□ 17.1
SFPQP23246 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.373e-6■■■□□ 17.1
SFPQP23246 EXT1-203ENST00000437196 1446 ntTSL 514.86□□□□□ -0.033e-6■■■□□ 17.1
SFPQP23246 EXT1-202ENST00000436216 700 ntTSL 313.81□□□□□ -0.23e-6■■■□□ 17.1
SFPQP23246 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC27.16■■□□□ 1.942e-6■■■□□ 17.1
SFPQP23246 SPIRE2-209ENST00000566337 1369 ntTSL 525.22■■□□□ 1.632e-6■■■□□ 17.1
SFPQP23246 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.452e-6■■■□□ 17.1
SFPQP23246 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC22■■□□□ 1.112e-6■■■□□ 17.1
SFPQP23246 SPIRE2-206ENST00000564878 663 ntTSL 320.09■□□□□ 0.812e-6■■■□□ 17.1
SFPQP23246 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.095e-6■■■□□ 17
SFPQP23246 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 15e-6■■■□□ 17
SFPQP23246 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.855e-6■■■□□ 17
SFPQP23246 IMMP2L-204ENST00000447215 1164 ntTSL 3 BASIC13.09□□□□□ -0.315e-6■■■□□ 17
SFPQP23246 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.615e-7■■■□□ 17
SFPQP23246 DIDO1-206ENST00000395340 7551 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.635e-7■■■□□ 17
SFPQP23246 SCAF8-204ENST00000461219 677 ntTSL 522.85■■□□□ 1.252e-6■■■□□ 17
SFPQP23246 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.662e-6■■■□□ 17
SFPQP23246 SCAF8-203ENST00000417268 4944 ntTSL 2 BASIC14.81□□□□□ -0.042e-6■■■□□ 17
SFPQP23246 SCAF8-205ENST00000464628 468 ntTSL 512.84□□□□□ -0.352e-6■■■□□ 17
SFPQP23246 SCAF8-202ENST00000367186 4908 ntTSL 2 BASIC12.29□□□□□ -0.442e-6■■■□□ 17
SFPQP23246 MAGI1-203ENST00000460329 3694 ntTSL 515.9■□□□□ 0.142e-7■■■□□ 17
SFPQP23246 MAGI1-204ENST00000463103 4193 ntTSL 515.17■□□□□ 0.022e-7■■■□□ 17
SFPQP23246 KDM4B-206ENST00000588361 3039 ntTSL 217.65■□□□□ 0.423e-6■■■□□ 17
SFPQP23246 KDM4B-208ENST00000589104 3470 ntTSL 215.4■□□□□ 0.063e-6■■■□□ 17
SFPQP23246 KDM4B-207ENST00000588961 560 ntTSL 49.74□□□□□ -0.853e-6■■■□□ 17
SFPQP23246 WAC-212ENST00000448193 506 ntTSL 229.85■■■□□ 2.372e-8■■■□□ 17
SFPQP23246 WAC-211ENST00000442148 759 ntTSL 521.4■■□□□ 1.022e-8■■■□□ 17
SFPQP23246 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC21.21■□□□□ 0.992e-8■■■□□ 17
SFPQP23246 WAC-202ENST00000347934 2839 ntTSL 5 BASIC21.02■□□□□ 0.962e-8■■■□□ 17
SFPQP23246 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.62e-8■■■□□ 17
SFPQP23246 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC16.87■□□□□ 0.292e-8■■■□□ 17
SFPQP23246 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC16.84■□□□□ 0.292e-8■■■□□ 17
SFPQP23246 WAC-207ENST00000420266 784 ntTSL 515.46■□□□□ 0.072e-8■■■□□ 17
SFPQP23246 CYB5R3-207ENST00000466276 581 ntTSL 414.94□□□□□ -0.022e-8■■■□□ 17
SFPQP23246 WAC-204ENST00000375646 2176 ntTSL 5 BASIC13.88□□□□□ -0.192e-8■■■□□ 17
SFPQP23246 CYB5R3-206ENST00000438270 675 ntTSL 313.51□□□□□ -0.252e-8■■■□□ 17
SFPQP23246 WAC-209ENST00000428935 1320 ntTSL 2 BASIC6.27□□□□□ -1.412e-8■■■□□ 17
SFPQP23246 WAC-210ENST00000439676 2762 ntTSL 55.76□□□□□ -1.492e-8■■■□□ 17
SFPQP23246 WAC-208ENST00000424454 1330 ntTSL 25.54□□□□□ -1.522e-8■■■□□ 17
SFPQP23246 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC4.89□□□□□ -1.632e-8■■■□□ 17
SFPQP23246 WAC-201ENST00000345541 4526 ntTSL 1 (best)4.74□□□□□ -1.652e-8■■■□□ 17
SFPQP23246 WAC-206ENST00000414108 816 ntTSL 34.47□□□□□ -1.692e-8■■■□□ 17
SFPQP23246 EIF4A1-219ENST00000581770 447 ntTSL 215.6■□□□□ 0.097e-7■■■□□ 17
SFPQP23246 SKI-202ENST00000478223 294 ntTSL 313.02□□□□□ -0.331e-6■■■□□ 17
SFPQP23246 AFDN-209ENST00000400825 963 ntTSL 531.89■■■□□ 2.74e-7■■■□□ 16.9
SFPQP23246 AFDN-208ENST00000400824 875 ntTSL 529.56■■■□□ 2.324e-7■■■□□ 16.9
SFPQP23246 DIDO1-204ENST00000370368 2704 ntTSL 1 (best) BASIC15.18■□□□□ 0.026e-7■■■□□ 16.9
SFPQP23246 DIDO1-202ENST00000354665 2707 ntTSL 1 (best) BASIC14.91□□□□□ -0.026e-7■■■□□ 16.9
SFPQP23246 BCAR1-222ENST00000569340 714 ntTSL 314.81□□□□□ -0.047e-7■■■□□ 16.9
SFPQP23246 FAM60A-204ENST00000536836 1734 ntTSL 215.61■□□□□ 0.098e-7■■■□□ 16.9
SFPQP23246 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC15.53■□□□□ 0.088e-7■■■□□ 16.9
SFPQP23246 FAM60A-206ENST00000539409 2532 ntTSL 1 (best) BASIC12.48□□□□□ -0.418e-7■■■□□ 16.9
SFPQP23246 FAM60A-201ENST00000337682 3163 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.558e-7■■■□□ 16.9
SFPQP23246 FAM60A-205ENST00000539004 459 ntTSL 54.85□□□□□ -1.638e-7■■■□□ 16.9
SFPQP23246 SLC16A3-218ENST00000583444 2882 nt22.14■■□□□ 1.132e-8■■■□□ 16.8
SFPQP23246 TNS3-203ENST00000415929 570 ntTSL 413.41□□□□□ -0.262e-6■■■□□ 16.8
SFPQP23246 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.822e-6■■■□□ 16.8
SFPQP23246 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.72e-6■■■□□ 16.8
SFPQP23246 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC19.26■□□□□ 0.672e-6■■■□□ 16.8
SFPQP23246 ATP11A-201ENST00000375630 8768 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.041e-6■■■□□ 16.8
SFPQP23246 ATP11A-202ENST00000375645 8795 ntAPPRIS P2 TSL 5 BASIC14.46□□□□□ -0.11e-6■■■□□ 16.8
SFPQP23246 ATP11A-212ENST00000487903 8858 ntAPPRIS P2 TSL 5 BASIC12.48□□□□□ -0.411e-6■■■□□ 16.8
SFPQP23246 SHANK2-218ENST00000601538 9062 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.122e-6■■■□□ 16.8
SFPQP23246 FARP1-231ENST00000600648 433 ntTSL 524.16■■□□□ 1.463e-7■■■□□ 16.7
SFPQP23246 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.737e-7■■■□□ 16.7
SFPQP23246 SHANK2-220ENST00000608988 1879 ntTSL 526.02■■□□□ 1.762e-6■■■□□ 16.7
SFPQP23246 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC29.81■■■□□ 2.361e-6■■■□□ 16.7
SFPQP23246 AGAP1-214ENST00000635100 2478 ntTSL 517.68■□□□□ 0.421e-6■■■□□ 16.7
SFPQP23246 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.261e-6■■■□□ 16.7
SFPQP23246 SLC12A7-204ENST00000513223 1066 ntTSL 517.26■□□□□ 0.356e-6■■■□□ 16.7
SFPQP23246 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.266e-6■■■□□ 16.7
SFPQP23246 SLC12A7-206ENST00000634447 3142 ntTSL 515.9■□□□□ 0.146e-6■■■□□ 16.7
SFPQP23246 SS18L1-203ENST00000450482 781 ntTSL 513.09□□□□□ -0.313e-7■■■□□ 16.6
SFPQP23246 SS18L1-201ENST00000331758 4493 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.663e-7■■■□□ 16.6
SFPQP23246 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.737e-7■■■□□ 16.6
SFPQP23246 STK25-215ENST00000439101 779 ntTSL 529.24■■■□□ 2.277e-7■■■□□ 16.6
SFPQP23246 STK25-209ENST00000424537 781 ntTSL 228.86■■■□□ 2.217e-7■■■□□ 16.6
SFPQP23246 STK25-210ENST00000426941 575 ntTSL 225.38■■□□□ 1.657e-7■■■□□ 16.6
SFPQP23246 STK25-219ENST00000452891 575 ntTSL 425.38■■□□□ 1.657e-7■■■□□ 16.6
SFPQP23246 STK25-234ENST00000535007 2459 ntTSL 2 BASIC25.24■■□□□ 1.637e-7■■■□□ 16.6
Retrieved 100 of 4,991 protein–RNA pairs in 266.3 ms