RNA–Protein interactions for RNA: ENST00000559460.5

SMAD3-211, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 568 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-211ENST00000559460 NISCHQ9Y2I1 1504 aa24.94■■□□□ 1.58
SMAD3-211ENST00000559460 ABCC9O60706 1549 aa23.43■■□□□ 1.34
SMAD3-211ENST00000559460 CCDC180Q9P1Z9 1646 aa22.71■■□□□ 1.23
SMAD3-211ENST00000559460 DNAJC5BQ9UF47 199 aa22.48■■□□□ 1.19
SMAD3-211ENST00000559460 RB1CC1Q8TDY2 1594 aa22.02■■□□□ 1.12
SMAD3-211ENST00000559460 PABPN1Q86U42 306 aaKnown RBP eCLIP21.7■■□□□ 1.06
SMAD3-211ENST00000559460 NACADO15069 1562 aa21.66■■□□□ 1.06
SMAD3-211ENST00000559460 DCAF8L2P0C7V8 631 aa21.51■■□□□ 1.03
SMAD3-211ENST00000559460 UNC13AQ9UPW8 1703 aa21.37■■□□□ 1.01
SMAD3-211ENST00000559460 BICRAQ9NZM4 1560 aa21.27■□□□□ 0.99
SMAD3-211ENST00000559460 DNAJC5Q9H3Z4 198 aa21.26■□□□□ 0.99
SMAD3-211ENST00000559460 CECR2Q9BXF3 1484 aa21.2■□□□□ 0.98
SMAD3-211ENST00000559460 CC2D2AQ9P2K1 1620 aa21.1■□□□□ 0.97
SMAD3-211ENST00000559460 MYO15BQ96JP2 1530 aa21.09■□□□□ 0.97
SMAD3-211ENST00000559460 SHROOM4Q9ULL8 1493 aa21.04■□□□□ 0.96
SMAD3-211ENST00000559460 EIF4G1Q04637 1599 aaKnown RBP20.89■□□□□ 0.93
SMAD3-211ENST00000559460 SCRIBQ14160 1630 aa20.67■□□□□ 0.9
SMAD3-211ENST00000559460 DCAF1Q9Y4B6 1507 aa20.54■□□□□ 0.88
SMAD3-211ENST00000559460 CUX2O14529 1486 aa20.52■□□□□ 0.88
SMAD3-211ENST00000559460 ZCCHC6Q5VYS8 1495 aaKnown RBP20.51■□□□□ 0.87
SMAD3-211ENST00000559460 ERCC6Q03468 1493 aa20.38■□□□□ 0.85
SMAD3-211ENST00000559460 TRIM41Q8WV44 630 aa20.14■□□□□ 0.81
SMAD3-211ENST00000559460 NCAPD3P42695 1498 aa19.97■□□□□ 0.79
SMAD3-211ENST00000559460 NESP48681 1621 aa19.87■□□□□ 0.77
SMAD3-211ENST00000559460 THOC2Q8NI27 1593 aaKnown RBP19.82■□□□□ 0.76
SMAD3-211ENST00000559460 ATAD2BQ9ULI0 1458 aa19.8■□□□□ 0.76
SMAD3-211ENST00000559460 HMGXB3Q12766 1538 aa19.78■□□□□ 0.76
SMAD3-211ENST00000559460 SMARCA2P51531 1590 aa19.78■□□□□ 0.76
SMAD3-211ENST00000559460 LAMC3Q9Y6N6 1575 aa19.68■□□□□ 0.74
SMAD3-211ENST00000559460 BAZ1BQ9UIG0 1483 aaKnown RBP19.66■□□□□ 0.74
SMAD3-211ENST00000559460 PDS5BQ9NTI5 1447 aa19.64■□□□□ 0.73
SMAD3-211ENST00000559460 SMARCA4P51532 1647 aa19.62■□□□□ 0.73
SMAD3-211ENST00000559460 KIF21AQ7Z4S6 1674 aa19.6■□□□□ 0.73
SMAD3-211ENST00000559460 BAZ1AQ9NRL2 1556 aaPredicted RBP19.51■□□□□ 0.71
SMAD3-211ENST00000559460 OSCARQ8IYS5 282 aa19.48■□□□□ 0.71
SMAD3-211ENST00000559460 MRC2Q9UBG0 1479 aa19.48■□□□□ 0.71
SMAD3-211ENST00000559460 WDR62O43379 1518 aa19.41■□□□□ 0.7
SMAD3-211ENST00000559460 PEG3Q9GZU2 1588 aa19.4■□□□□ 0.7
SMAD3-211ENST00000559460 CADPSQ9ULU8 1353 aa19.36■□□□□ 0.69
SMAD3-211ENST00000559460 CEP164Q9UPV0 1460 aa19.28■□□□□ 0.68
SMAD3-211ENST00000559460 RIMBP3CA6NJZ7 1639 aa19.25■□□□□ 0.67
SMAD3-211ENST00000559460 RIMBP3BA6NNM3 1639 aa19.25■□□□□ 0.67
SMAD3-211ENST00000559460 RIMBP3Q9UFD9 1639 aa19.25■□□□□ 0.67
SMAD3-211ENST00000559460 AEBP2Q6ZN18 517 aaPredicted RBP19.21■□□□□ 0.67
SMAD3-211ENST00000559460 MROH2BQ7Z745 1585 aa19.19■□□□□ 0.66
SMAD3-211ENST00000559460 TRHP20396 242 aaPredicted RBP19.18■□□□□ 0.66
SMAD3-211ENST00000559460 FANCD2Q9BXW9 1451 aa19.16■□□□□ 0.66
SMAD3-211ENST00000559460 ARHGEF11O15085 1522 aa19.13■□□□□ 0.65
SMAD3-211ENST00000559460 CYB5RLQ6IPT4 315 aa19.07■□□□□ 0.64
SMAD3-211ENST00000559460 URB2Q14146 1524 aaKnown RBP19■□□□□ 0.63
SMAD3-211ENST00000559460 CFTRP13569 1480 aa18.97■□□□□ 0.63
SMAD3-211ENST00000559460 WIZO95785 1651 aa18.93■□□□□ 0.62
SMAD3-211ENST00000559460 IFT140Q96RY7 1462 aa18.9■□□□□ 0.62
SMAD3-211ENST00000559460 ZNF608Q9ULD9 1512 aaPredicted RBP18.88■□□□□ 0.61
SMAD3-211ENST00000559460 ARAP1Q96P48 1450 aa18.86■□□□□ 0.61
SMAD3-211ENST00000559460 RSF1Q96T23 1441 aaPredicted RBP18.8■□□□□ 0.6
SMAD3-211ENST00000559460 FBLN2P98095 1184 aa18.79■□□□□ 0.6
SMAD3-211ENST00000559460 EIF4G3O43432 1585 aaKnown RBP18.78■□□□□ 0.6
SMAD3-211ENST00000559460 CHD1O14646 1710 aa18.74■□□□□ 0.59
SMAD3-211ENST00000559460 PRDM2Q13029 1718 aa18.71■□□□□ 0.59
SMAD3-211ENST00000559460 TOPBP1Q92547 1522 aa18.69■□□□□ 0.58
SMAD3-211ENST00000559460 TOP2AP11388 1531 aaKnown RBP18.69■□□□□ 0.58
SMAD3-211ENST00000559460 ABCC8Q09428 1581 aa18.67■□□□□ 0.58
SMAD3-211ENST00000559460 AQRO60306 1485 aaKnown RBP eCLIP18.64■□□□□ 0.571e-6■■■■□ 23.7
SMAD3-211ENST00000559460 DNMBPQ6XZF7 1577 aa18.58■□□□□ 0.56
SMAD3-211ENST00000559460 TARBP1Q13395 1621 aaKnown RBP18.53■□□□□ 0.56
SMAD3-211ENST00000559460 SYNJ1O43426 1573 aa18.53■□□□□ 0.56
SMAD3-211ENST00000559460 CHMP7Q8WUX9 453 aaPredicted RBP18.51■□□□□ 0.55
SMAD3-211ENST00000559460 CLASP1Q7Z460 1538 aa18.5■□□□□ 0.55
SMAD3-211ENST00000559460 SNAPC4Q5SXM2 1469 aa18.47■□□□□ 0.55
SMAD3-211ENST00000559460 POLA1P09884 1462 aaPredicted RBP18.46■□□□□ 0.54
SMAD3-211ENST00000559460 CCDC88BA6NC98 1476 aa18.45■□□□□ 0.54
SMAD3-211ENST00000559460 TDRD9Q8NDG6 1382 aaKnown RBP18.43■□□□□ 0.54
SMAD3-211ENST00000559460 GAPVD1Q14C86 1478 aa18.43■□□□□ 0.54
SMAD3-211ENST00000559460 SOGA1O94964 1423 aa18.4■□□□□ 0.54
SMAD3-211ENST00000559460 MAGI1Q96QZ7 1491 aaPredicted RBP18.39■□□□□ 0.54
SMAD3-211ENST00000559460 RAD54L2Q9Y4B4 1467 aa18.39■□□□□ 0.54
SMAD3-211ENST00000559460 WDR97A6NE52 1622 aa18.38■□□□□ 0.53
SMAD3-211ENST00000559460 SYNJ2O15056 1496 aa18.34■□□□□ 0.53
SMAD3-211ENST00000559460 GRIN2BQ13224 1484 aa18.33■□□□□ 0.52
SMAD3-211ENST00000559460 ILDR1Q86SU0 546 aaPredicted RBP18.31■□□□□ 0.52
SMAD3-211ENST00000559460 FGD5Q6ZNL6 1462 aa18.26■□□□□ 0.51
SMAD3-211ENST00000559460 PBRM1Q86U86 1689 aa18.17■□□□□ 0.5
SMAD3-211ENST00000559460 ERCC6L2Q5T890 1561 aa18.13■□□□□ 0.49
SMAD3-211ENST00000559460 KIF13AQ9H1H9 1805 aa18.12■□□□□ 0.49
SMAD3-211ENST00000559460 CEP170Q5SW79 1584 aa18.09■□□□□ 0.49
SMAD3-211ENST00000559460 FAM69CQ0P6D2 419 aa18.08■□□□□ 0.48
SMAD3-211ENST00000559460 CUX1P39880 1505 aa18.08■□□□□ 0.48
SMAD3-211ENST00000559460 GRIN2AQ12879 1464 aa18.07■□□□□ 0.48
SMAD3-211ENST00000559460 KDM4FA0A1W2PPD8 638 aa18.07■□□□□ 0.48
SMAD3-211ENST00000559460 NPM1P06748 294 aaKnown RBP eCLIP18.06■□□□□ 0.48
SMAD3-211ENST00000559460 KDM6BO15054 1643 aa18.03■□□□□ 0.48
SMAD3-211ENST00000559460 ABCA5Q8WWZ7 1642 aa18.01■□□□□ 0.47
SMAD3-211ENST00000559460 ABCC10Q5T3U5 1492 aa18.01■□□□□ 0.47
SMAD3-211ENST00000559460 NUP160Q12769 1436 aa18■□□□□ 0.47
SMAD3-211ENST00000559460 ABCA10Q8WWZ4 1543 aa17.99■□□□□ 0.47
SMAD3-211ENST00000559460 SHROOM2Q13796 1616 aa17.98■□□□□ 0.47
SMAD3-211ENST00000559460 ADAMTS12P58397 1594 aa17.96■□□□□ 0.46
SMAD3-211ENST00000559460 PRG4Q92954 1404 aaPredicted RBP17.94■□□□□ 0.46
SMAD3-211ENST00000559460 DIP2BQ9P265 1576 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms