RNA–Protein interactions for RNA: ENST00000589528.1

ACTN4-211, Transcript of actinin alpha 4, humanhuman

TSL 2

Gene ACTN4, Length 441 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN4-211ENST00000589528 NISCHQ9Y2I1 1504 aa38.45■■■■□ 3.75
ACTN4-211ENST00000589528 ABCC9O60706 1549 aa34.96■■■■□ 3.19
ACTN4-211ENST00000589528 CCDC180Q9P1Z9 1646 aa34.69■■■■□ 3.14
ACTN4-211ENST00000589528 RB1CC1Q8TDY2 1594 aa33.17■■■□□ 2.9
ACTN4-211ENST00000589528 DNAJC5BQ9UF47 199 aa32.95■■■□□ 2.87
ACTN4-211ENST00000589528 NACADO15069 1562 aa32.84■■■□□ 2.85
ACTN4-211ENST00000589528 DCAF8L2P0C7V8 631 aa32.7■■■□□ 2.83
ACTN4-211ENST00000589528 PABPN1Q86U42 306 aaKnown RBP eCLIP32.49■■■□□ 2.797e-9■■■□□ 16
ACTN4-211ENST00000589528 UNC13AQ9UPW8 1703 aa32.44■■■□□ 2.78
ACTN4-211ENST00000589528 MYO15BQ96JP2 1530 aa32.24■■■□□ 2.75
ACTN4-211ENST00000589528 BICRAQ9NZM4 1560 aa32.13■■■□□ 2.73
ACTN4-211ENST00000589528 ZCCHC6Q5VYS8 1495 aaKnown RBP31.79■■■□□ 2.68
ACTN4-211ENST00000589528 DCAF1Q9Y4B6 1507 aa31.72■■■□□ 2.67
ACTN4-211ENST00000589528 SHROOM4Q9ULL8 1493 aa31.71■■■□□ 2.67
ACTN4-211ENST00000589528 SCRIBQ14160 1630 aa31.61■■■□□ 2.65
ACTN4-211ENST00000589528 CC2D2AQ9P2K1 1620 aa31.57■■■□□ 2.64
ACTN4-211ENST00000589528 CECR2Q9BXF3 1484 aa31.52■■■□□ 2.64
ACTN4-211ENST00000589528 EIF4G1Q04637 1599 aaKnown RBP31.42■■■□□ 2.62
ACTN4-211ENST00000589528 DNAJC5Q9H3Z4 198 aa30.53■■■□□ 2.48
ACTN4-211ENST00000589528 ERCC6Q03468 1493 aa30.28■■■□□ 2.44
ACTN4-211ENST00000589528 NCAPD3P42695 1498 aa30.27■■■□□ 2.44
ACTN4-211ENST00000589528 CUX2O14529 1486 aa30.25■■■□□ 2.43
ACTN4-211ENST00000589528 ATAD2BQ9ULI0 1458 aa30.15■■■□□ 2.42
ACTN4-211ENST00000589528 SMARCA2P51531 1590 aa30.11■■■□□ 2.41
ACTN4-211ENST00000589528 SMARCA4P51532 1647 aa30.09■■■□□ 2.41
ACTN4-211ENST00000589528 HMGXB3Q12766 1538 aa30.06■■■□□ 2.4
ACTN4-211ENST00000589528 NESP48681 1621 aa29.93■■■□□ 2.38
ACTN4-211ENST00000589528 BAZ1BQ9UIG0 1483 aaKnown RBP29.91■■■□□ 2.38
ACTN4-211ENST00000589528 BAZ1AQ9NRL2 1556 aaPredicted RBP29.9■■■□□ 2.38
ACTN4-211ENST00000589528 PEG3Q9GZU2 1588 aa29.75■■■□□ 2.35
ACTN4-211ENST00000589528 LAMC3Q9Y6N6 1575 aa29.7■■■□□ 2.35
ACTN4-211ENST00000589528 THOC2Q8NI27 1593 aaKnown RBP29.69■■■□□ 2.34
ACTN4-211ENST00000589528 MROH2BQ7Z745 1585 aa29.61■■■□□ 2.33
ACTN4-211ENST00000589528 KIF21AQ7Z4S6 1674 aa29.6■■■□□ 2.33
ACTN4-211ENST00000589528 PDS5BQ9NTI5 1447 aa29.54■■■□□ 2.32
ACTN4-211ENST00000589528 CADPSQ9ULU8 1353 aa29.36■■■□□ 2.29
ACTN4-211ENST00000589528 WIZO95785 1651 aa29.3■■■□□ 2.28
ACTN4-211ENST00000589528 MRC2Q9UBG0 1479 aa29.29■■■□□ 2.28
ACTN4-211ENST00000589528 WDR62O43379 1518 aa29.21■■■□□ 2.27
ACTN4-211ENST00000589528 TRIM41Q8WV44 630 aa29.17■■■□□ 2.26
ACTN4-211ENST00000589528 CEP164Q9UPV0 1460 aa29.15■■■□□ 2.26
ACTN4-211ENST00000589528 FANCD2Q9BXW9 1451 aa29.07■■■□□ 2.24
ACTN4-211ENST00000589528 CFTRP13569 1480 aa28.95■■■□□ 2.22
ACTN4-211ENST00000589528 TOP2AP11388 1531 aaKnown RBP28.89■■■□□ 2.22
ACTN4-211ENST00000589528 RSF1Q96T23 1441 aaPredicted RBP28.88■■■□□ 2.21
ACTN4-211ENST00000589528 OSCARQ8IYS5 282 aa28.84■■■□□ 2.21
ACTN4-211ENST00000589528 URB2Q14146 1524 aaKnown RBP28.81■■■□□ 2.2
ACTN4-211ENST00000589528 PRDM2Q13029 1718 aa28.77■■■□□ 2.2
ACTN4-211ENST00000589528 IFT140Q96RY7 1462 aa28.55■■■□□ 2.16
ACTN4-211ENST00000589528 CCDC88BA6NC98 1476 aa28.54■■■□□ 2.16
ACTN4-211ENST00000589528 RIMBP3CA6NJZ7 1639 aa28.51■■■□□ 2.15
ACTN4-211ENST00000589528 RIMBP3BA6NNM3 1639 aa28.51■■■□□ 2.15
ACTN4-211ENST00000589528 RIMBP3Q9UFD9 1639 aa28.51■■■□□ 2.15
ACTN4-211ENST00000589528 ZNF608Q9ULD9 1512 aaPredicted RBP28.5■■■□□ 2.15
ACTN4-211ENST00000589528 TOPBP1Q92547 1522 aa28.47■■■□□ 2.15
ACTN4-211ENST00000589528 ABCC8Q09428 1581 aa28.41■■■□□ 2.14
ACTN4-211ENST00000589528 EIF4G3O43432 1585 aaKnown RBP28.38■■■□□ 2.13
ACTN4-211ENST00000589528 ARHGEF11O15085 1522 aa28.36■■■□□ 2.13
ACTN4-211ENST00000589528 DNMBPQ6XZF7 1577 aa28.36■■■□□ 2.13
ACTN4-211ENST00000589528 CHD1O14646 1710 aa28.27■■■□□ 2.12
ACTN4-211ENST00000589528 AQRO60306 1485 aaKnown RBP eCLIP28.22■■■□□ 2.116e-8■■■■■ 42.5
ACTN4-211ENST00000589528 TARBP1Q13395 1621 aaKnown RBP28.22■■■□□ 2.11
ACTN4-211ENST00000589528 FBLN2P98095 1184 aa28.19■■■□□ 2.1
ACTN4-211ENST00000589528 CYB5RLQ6IPT4 315 aa28.19■■■□□ 2.1
ACTN4-211ENST00000589528 POLA1P09884 1462 aaPredicted RBP28.15■■■□□ 2.1
ACTN4-211ENST00000589528 RAD54L2Q9Y4B4 1467 aa28.06■■■□□ 2.08
ACTN4-211ENST00000589528 TRHP20396 242 aaPredicted RBP28.05■■■□□ 2.08
ACTN4-211ENST00000589528 ARAP1Q96P48 1450 aa28.04■■■□□ 2.08
ACTN4-211ENST00000589528 SOGA1O94964 1423 aa28.03■■■□□ 2.08
ACTN4-211ENST00000589528 TDRD9Q8NDG6 1382 aaKnown RBP28.01■■■□□ 2.07
ACTN4-211ENST00000589528 WDR97A6NE52 1622 aa27.96■■■□□ 2.07
ACTN4-211ENST00000589528 SNAPC4Q5SXM2 1469 aa27.95■■■□□ 2.07
ACTN4-211ENST00000589528 FGD5Q6ZNL6 1462 aa27.95■■■□□ 2.06
ACTN4-211ENST00000589528 CHMP7Q8WUX9 453 aaPredicted RBP27.91■■■□□ 2.06
ACTN4-211ENST00000589528 SYNJ1O43426 1573 aa27.89■■■□□ 2.05
ACTN4-211ENST00000589528 MAGI1Q96QZ7 1491 aaPredicted RBP27.87■■■□□ 2.05
ACTN4-211ENST00000589528 CUX1P39880 1505 aa27.85■■■□□ 2.05
ACTN4-211ENST00000589528 CLASP1Q7Z460 1538 aa27.85■■■□□ 2.05
ACTN4-211ENST00000589528 GRIN2BQ13224 1484 aa27.83■■■□□ 2.04
ACTN4-211ENST00000589528 SYNJ2O15056 1496 aa27.77■■■□□ 2.04
ACTN4-211ENST00000589528 PBRM1Q86U86 1689 aa27.76■■■□□ 2.03
ACTN4-211ENST00000589528 GAPVD1Q14C86 1478 aa27.7■■■□□ 2.02
ACTN4-211ENST00000589528 ABCA10Q8WWZ4 1543 aa27.6■■■□□ 2.01
ACTN4-211ENST00000589528 ABCA5Q8WWZ7 1642 aa27.59■■■□□ 2.01
ACTN4-211ENST00000589528 SUPT5HO00267 1087 aaKnown RBP27.49■■□□□ 1.99
ACTN4-211ENST00000589528 AEBP2Q6ZN18 517 aaPredicted RBP27.48■■□□□ 1.99
ACTN4-211ENST00000589528 WRNQ14191 1432 aaPredicted RBP eCLIP27.47■■□□□ 1.99
ACTN4-211ENST00000589528 GRIN2AQ12879 1464 aa27.46■■□□□ 1.99
ACTN4-211ENST00000589528 ADAMTS12P58397 1594 aa27.42■■□□□ 1.98
ACTN4-211ENST00000589528 ERCC6L2Q5T890 1561 aa27.39■■□□□ 1.97
ACTN4-211ENST00000589528 CEP170Q5SW79 1584 aa27.38■■□□□ 1.97
ACTN4-211ENST00000589528 BIVM-ERCC5R4GMW8 1640 aa27.37■■□□□ 1.97
ACTN4-211ENST00000589528 TOP2BQ02880 1626 aa27.36■■□□□ 1.97
ACTN4-211ENST00000589528 NUP160Q12769 1436 aa27.34■■□□□ 1.97
ACTN4-211ENST00000589528 FHAD1B1AJZ9 1412 aa27.33■■□□□ 1.96
ACTN4-211ENST00000589528 SHROOM2Q13796 1616 aa27.28■■□□□ 1.96
ACTN4-211ENST00000589528 ERICH3Q5RHP9 1530 aa27.27■■□□□ 1.96
ACTN4-211ENST00000589528 PRG4Q92954 1404 aaPredicted RBP27.16■■□□□ 1.94
ACTN4-211ENST00000589528 KIF13AQ9H1H9 1805 aa27.13■■□□□ 1.93
ACTN4-211ENST00000589528 JPH4Q96JJ6 628 aa27.11■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms