RNA–Protein interactions for RNA: ENST00000589104.5

KDM4B-208, Transcript of lysine demethylase 4B, humanhuman

TSL 2

Gene KDM4B, Length 3,470 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KDM4B-208ENST00000589104 NISCHQ9Y2I1 1504 aa28.87■■■□□ 2.21
KDM4B-208ENST00000589104 CCDC180Q9P1Z9 1646 aa25■■□□□ 1.59
KDM4B-208ENST00000589104 ZCCHC6Q5VYS8 1495 aaKnown RBP24.63■■□□□ 1.53
KDM4B-208ENST00000589104 DCAF1Q9Y4B6 1507 aa24.2■■□□□ 1.46
KDM4B-208ENST00000589104 MYO15BQ96JP2 1530 aa23.52■■□□□ 1.36
KDM4B-208ENST00000589104 SHROOM4Q9ULL8 1493 aa23.44■■□□□ 1.34
KDM4B-208ENST00000589104 ABCC9O60706 1549 aa23.36■■□□□ 1.33
KDM4B-208ENST00000589104 CHIC1Q5VXU3 224 aa23.03■■□□□ 1.28
KDM4B-208ENST00000589104 SUPT5HO00267 1087 aaKnown RBP22.87■■□□□ 1.25
KDM4B-208ENST00000589104 EIF4G1Q04637 1599 aaKnown RBP22.74■■□□□ 1.23
KDM4B-208ENST00000589104 RB1CC1Q8TDY2 1594 aa22.73■■□□□ 1.23
KDM4B-208ENST00000589104 RSF1Q96T23 1441 aaPredicted RBP22.71■■□□□ 1.23
KDM4B-208ENST00000589104 NACADO15069 1562 aa22.7■■□□□ 1.22
KDM4B-208ENST00000589104 SCRIBQ14160 1630 aa22.63■■□□□ 1.21
KDM4B-208ENST00000589104 HRCP23327 699 aa22.56■■□□□ 1.2
KDM4B-208ENST00000589104 BAZ1AQ9NRL2 1556 aaPredicted RBP22.42■■□□□ 1.18
KDM4B-208ENST00000589104 UNC13AQ9UPW8 1703 aa22.34■■□□□ 1.17
KDM4B-208ENST00000589104 MROH2BQ7Z745 1585 aa22.32■■□□□ 1.16
KDM4B-208ENST00000589104 WIZO95785 1651 aa22.26■■□□□ 1.15
KDM4B-208ENST00000589104 CECR2Q9BXF3 1484 aa22.21■■□□□ 1.15
KDM4B-208ENST00000589104 TOP2AP11388 1531 aaKnown RBP22.07■■□□□ 1.12
KDM4B-208ENST00000589104 SMARCA4P51532 1647 aa22.04■■□□□ 1.12
KDM4B-208ENST00000589104 PEG3Q9GZU2 1588 aa22.03■■□□□ 1.12
KDM4B-208ENST00000589104 DCAF8L2P0C7V8 631 aa21.98■■□□□ 1.11
KDM4B-208ENST00000589104 SMARCA2P51531 1590 aa21.96■■□□□ 1.11
KDM4B-208ENST00000589104 LOC105371045A0A1W2PR82 267 aa21.95■■□□□ 1.1
KDM4B-208ENST00000589104 PCGF6Q9BYE7 350 aa21.89■■□□□ 1.1
KDM4B-208ENST00000589104 TRIM26Q12899 539 aaPredicted RBP21.86■■□□□ 1.09
KDM4B-208ENST00000589104 BICRAQ9NZM4 1560 aa21.85■■□□□ 1.09
KDM4B-208ENST00000589104 WRNQ14191 1432 aaPredicted RBP eCLIP21.75■■□□□ 1.072e-6■■■■■ 48.7
KDM4B-208ENST00000589104 CCDC88BA6NC98 1476 aa21.69■■□□□ 1.06
KDM4B-208ENST00000589104 PPARGC1BQ86YN6 1023 aaKnown RBP21.67■■□□□ 1.06
KDM4B-208ENST00000589104 ABCC8Q09428 1581 aa21.56■■□□□ 1.04
KDM4B-208ENST00000589104 TRIM41Q8WV44 630 aa21.54■■□□□ 1.04
KDM4B-208ENST00000589104 KIF21BO75037 1637 aa21.51■■□□□ 1.03
KDM4B-208ENST00000589104 EEA1Q15075 1411 aa21.47■■□□□ 1.03
KDM4B-208ENST00000589104 ZEB1P37275 1124 aaPredicted RBP21.43■■□□□ 1.02
KDM4B-208ENST00000589104 BIVM-ERCC5R4GMW8 1640 aa21.39■■□□□ 1.01
KDM4B-208ENST00000589104 SYNJ1O43426 1573 aa21.38■■□□□ 1.01
KDM4B-208ENST00000589104 PELP1Q8IZL8 1130 aaKnown RBP21.37■■□□□ 1.01
KDM4B-208ENST00000589104 TNIKQ9UKE5 1360 aa21.35■■□□□ 1.01
KDM4B-208ENST00000589104 SOGA1O94964 1423 aa21.27■□□□□ 0.99
KDM4B-208ENST00000589104 CEP162Q5TB80 1403 aa21.25■□□□□ 0.99
KDM4B-208ENST00000589104 TOP2BQ02880 1626 aa21.25■□□□□ 0.99
KDM4B-208ENST00000589104 RUSC2Q8N2Y8 1516 aa21.24■□□□□ 0.99
KDM4B-208ENST00000589104 PRDM2Q13029 1718 aa21.23■□□□□ 0.99
KDM4B-208ENST00000589104 BAZ1BQ9UIG0 1483 aaKnown RBP21.21■□□□□ 0.99
KDM4B-208ENST00000589104 ATAD2BQ9ULI0 1458 aa21.21■□□□□ 0.99
KDM4B-208ENST00000589104 GOLGA3Q08378 1498 aa21.16■□□□□ 0.98
KDM4B-208ENST00000589104 HMGXB3Q12766 1538 aa21.13■□□□□ 0.97
KDM4B-208ENST00000589104 ERICH3Q5RHP9 1530 aa21.08■□□□□ 0.97
KDM4B-208ENST00000589104 CEP164Q9UPV0 1460 aa21.06■□□□□ 0.96
KDM4B-208ENST00000589104 PRXQ9BXM0 1461 aa20.94■□□□□ 0.94
KDM4B-208ENST00000589104 FAM9AQ8IZU1 332 aaPredicted RBP20.92■□□□□ 0.94
KDM4B-208ENST00000589104 NCAPD3P42695 1498 aa20.89■□□□□ 0.94
KDM4B-208ENST00000589104 VPS8Q8N3P4 1428 aa20.88■□□□□ 0.93
KDM4B-208ENST00000589104 CSRNP3Q8WYN3 585 aa20.87■□□□□ 0.93
KDM4B-208ENST00000589104 CUX2O14529 1486 aa20.86■□□□□ 0.93
KDM4B-208ENST00000589104 RAPGEF2Q9Y4G8 1499 aa20.84■□□□□ 0.93
KDM4B-208ENST00000589104 CLIP1P30622 1438 aa20.83■□□□□ 0.93
KDM4B-208ENST00000589104 CUX1P39880 1505 aa20.83■□□□□ 0.92
KDM4B-208ENST00000589104 SCAF1Q9H7N4 1312 aaKnown RBP20.81■□□□□ 0.92
KDM4B-208ENST00000589104 ARAP1Q96P48 1450 aa20.81■□□□□ 0.92
KDM4B-208ENST00000589104 CFTRP13569 1480 aa20.75■□□□□ 0.91
KDM4B-208ENST00000589104 MAP3K1Q13233 1512 aa20.69■□□□□ 0.9
KDM4B-208ENST00000589104 RRBP1Q9P2E9 1410 aaKnown RBP20.65■□□□□ 0.9
KDM4B-208ENST00000589104 MYT1Q01538 1121 aa20.63■□□□□ 0.89
KDM4B-208ENST00000589104 CFAP43Q8NDM7 1665 aa20.61■□□□□ 0.89
KDM4B-208ENST00000589104 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.59■□□□□ 0.89
KDM4B-208ENST00000589104 WDR97A6NE52 1622 aa20.56■□□□□ 0.88
KDM4B-208ENST00000589104 ARHGAP35Q9NRY4 1499 aa20.5■□□□□ 0.87
KDM4B-208ENST00000589104 ACIN1Q9UKV3 1341 aaKnown RBP20.5■□□□□ 0.87
KDM4B-208ENST00000589104 CLSPNQ9HAW4 1339 aa20.48■□□□□ 0.87
KDM4B-208ENST00000589104 PABPN1Q86U42 306 aaKnown RBP eCLIP20.46■□□□□ 0.87
KDM4B-208ENST00000589104 TIAM1Q13009 1591 aa20.44■□□□□ 0.86
KDM4B-208ENST00000589104 CCER1Q8TC90 406 aaPredicted RBP20.41■□□□□ 0.86
KDM4B-208ENST00000589104 DHX57Q6P158 1386 aaKnown RBP20.39■□□□□ 0.86
KDM4B-208ENST00000589104 NEUROD1Q13562 356 aa20.39■□□□□ 0.86
KDM4B-208ENST00000589104 MAPKBP1O60336 1514 aa20.37■□□□□ 0.85
KDM4B-208ENST00000589104 CC2D2AQ9P2K1 1620 aa20.36■□□□□ 0.85
KDM4B-208ENST00000589104 KIF27Q86VH2 1401 aa20.36■□□□□ 0.85
KDM4B-208ENST00000589104 CTTNBP2Q8WZ74 1663 aa20.36■□□□□ 0.85
KDM4B-208ENST00000589104 LRRIQ1Q96JM4 1722 aa20.35■□□□□ 0.85
KDM4B-208ENST00000589104 DIEXFQ68CQ4 756 aaKnown RBP20.35■□□□□ 0.85
KDM4B-208ENST00000589104 EHMT2Q96KQ7 1210 aa20.33■□□□□ 0.85
KDM4B-208ENST00000589104 ZNF316A6NFI3 1004 aaPredicted RBP20.33■□□□□ 0.84
KDM4B-208ENST00000589104 CUL7Q14999 1698 aa20.3■□□□□ 0.84
KDM4B-208ENST00000589104 AQRO60306 1485 aaKnown RBP eCLIP20.27■□□□□ 0.847e-7■■■■□ 19.5
KDM4B-208ENST00000589104 DNMBPQ6XZF7 1577 aa20.27■□□□□ 0.83
KDM4B-208ENST00000589104 SAMD9Q5K651 1589 aa20.26■□□□□ 0.83
KDM4B-208ENST00000589104 IGF1RP08069 1367 aa20.25■□□□□ 0.83
KDM4B-208ENST00000589104 KIF21AQ7Z4S6 1674 aa20.24■□□□□ 0.83
KDM4B-208ENST00000589104 PCF11O94913 1555 aaKnown RBP20.24■□□□□ 0.83
KDM4B-208ENST00000589104 ABCA5Q8WWZ7 1642 aa20.24■□□□□ 0.83
KDM4B-208ENST00000589104 UBTFP17480 764 aaKnown RBP20.23■□□□□ 0.83
KDM4B-208ENST00000589104 EFCAB5A4FU69 1503 aa20.23■□□□□ 0.83
KDM4B-208ENST00000589104 ABCA10Q8WWZ4 1543 aa20.23■□□□□ 0.83
KDM4B-208ENST00000589104 FGD5Q6ZNL6 1462 aa20.2■□□□□ 0.82
KDM4B-208ENST00000589104 LRRC9Q6ZRR7 1453 aa20.18■□□□□ 0.82
KDM4B-208ENST00000589104 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.18■□□□□ 0.822e-6■■■■□ 21.9
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms