RNA–Protein interactions for RNA: ENST00000588361.1

KDM4B-206, Transcript of lysine demethylase 4B, humanhuman

TSL 2

Gene KDM4B, Length 3,039 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KDM4B-206ENST00000588361 NISCHQ9Y2I1 1504 aa31.12■■■□□ 2.57
KDM4B-206ENST00000588361 SHROOM4Q9ULL8 1493 aa27.17■■□□□ 1.94
KDM4B-206ENST00000588361 SUPT5HO00267 1087 aaKnown RBP26.71■■□□□ 1.87
KDM4B-206ENST00000588361 DCAF8L2P0C7V8 631 aa26.55■■□□□ 1.84
KDM4B-206ENST00000588361 ZCCHC6Q5VYS8 1495 aaKnown RBP26.27■■□□□ 1.8
KDM4B-206ENST00000588361 CCDC180Q9P1Z9 1646 aa26.13■■□□□ 1.77
KDM4B-206ENST00000588361 CHIC1Q5VXU3 224 aa25.74■■□□□ 1.71
KDM4B-206ENST00000588361 MYO15BQ96JP2 1530 aa25.58■■□□□ 1.69
KDM4B-206ENST00000588361 HRCP23327 699 aa25.42■■□□□ 1.66
KDM4B-206ENST00000588361 DCAF1Q9Y4B6 1507 aa25.26■■□□□ 1.63
KDM4B-206ENST00000588361 PPARGC1BQ86YN6 1023 aaKnown RBP25.24■■□□□ 1.63
KDM4B-206ENST00000588361 PCGF6Q9BYE7 350 aa25.22■■□□□ 1.63
KDM4B-206ENST00000588361 LOC105371045A0A1W2PR82 267 aa25.21■■□□□ 1.63
KDM4B-206ENST00000588361 SCRIBQ14160 1630 aa24.94■■□□□ 1.58
KDM4B-206ENST00000588361 EHMT2Q96KQ7 1210 aa24.78■■□□□ 1.56
KDM4B-206ENST00000588361 RSF1Q96T23 1441 aaPredicted RBP24.77■■□□□ 1.56
KDM4B-206ENST00000588361 FAM9AQ8IZU1 332 aaPredicted RBP24.77■■□□□ 1.56
KDM4B-206ENST00000588361 ABCC9O60706 1549 aa24.76■■□□□ 1.55
KDM4B-206ENST00000588361 TRIM41Q8WV44 630 aa24.72■■□□□ 1.55
KDM4B-206ENST00000588361 RB1CC1Q8TDY2 1594 aa24.5■■□□□ 1.51
KDM4B-206ENST00000588361 TRIM26Q12899 539 aaPredicted RBP24.49■■□□□ 1.51
KDM4B-206ENST00000588361 CECR2Q9BXF3 1484 aa24.48■■□□□ 1.51
KDM4B-206ENST00000588361 MROH2BQ7Z745 1585 aa24.31■■□□□ 1.48
KDM4B-206ENST00000588361 NACADO15069 1562 aa24.3■■□□□ 1.48
KDM4B-206ENST00000588361 PELP1Q8IZL8 1130 aaKnown RBP24.24■■□□□ 1.47
KDM4B-206ENST00000588361 SCAF1Q9H7N4 1312 aaKnown RBP24.18■■□□□ 1.46
KDM4B-206ENST00000588361 WIZO95785 1651 aa24.16■■□□□ 1.46
KDM4B-206ENST00000588361 TTBK1Q5TCY1 1321 aaPredicted RBP23.94■■□□□ 1.42
KDM4B-206ENST00000588361 PABPN1Q86U42 306 aaKnown RBP eCLIP23.9■■□□□ 1.42
KDM4B-206ENST00000588361 ZEB1P37275 1124 aaPredicted RBP23.87■■□□□ 1.41
KDM4B-206ENST00000588361 BAZ1AQ9NRL2 1556 aaPredicted RBP23.86■■□□□ 1.41
KDM4B-206ENST00000588361 ABCC8Q09428 1581 aa23.77■■□□□ 1.4
KDM4B-206ENST00000588361 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.74■■□□□ 1.39
KDM4B-206ENST00000588361 CCDC88BA6NC98 1476 aa23.73■■□□□ 1.39
KDM4B-206ENST00000588361 SMARCA4P51532 1647 aa23.65■■□□□ 1.38
KDM4B-206ENST00000588361 TOP2AP11388 1531 aaKnown RBP23.64■■□□□ 1.38
KDM4B-206ENST00000588361 CCER1Q8TC90 406 aaPredicted RBP23.64■■□□□ 1.37
KDM4B-206ENST00000588361 UBTFP17480 764 aaKnown RBP23.62■■□□□ 1.37
KDM4B-206ENST00000588361 SOGA1O94964 1423 aa23.61■■□□□ 1.37
KDM4B-206ENST00000588361 EIF4G1Q04637 1599 aaKnown RBP23.59■■□□□ 1.37
KDM4B-206ENST00000588361 SMARCA2P51531 1590 aa23.56■■□□□ 1.36
KDM4B-206ENST00000588361 NEUROD1Q13562 356 aa23.55■■□□□ 1.36
KDM4B-206ENST00000588361 UNC13AQ9UPW8 1703 aa23.51■■□□□ 1.35
KDM4B-206ENST00000588361 CSRNP3Q8WYN3 585 aa23.51■■□□□ 1.35
KDM4B-206ENST00000588361 RUSC2Q8N2Y8 1516 aa23.5■■□□□ 1.35
KDM4B-206ENST00000588361 ACIN1Q9UKV3 1341 aaKnown RBP23.48■■□□□ 1.35
KDM4B-206ENST00000588361 CEP162Q5TB80 1403 aa23.46■■□□□ 1.35
KDM4B-206ENST00000588361 GTF3C3Q9Y5Q9 886 aa23.43■■□□□ 1.34
KDM4B-206ENST00000588361 RANGAP1P46060 587 aaPredicted RBP23.42■■□□□ 1.34
KDM4B-206ENST00000588361 TNIKQ9UKE5 1360 aa23.33■■□□□ 1.33
KDM4B-206ENST00000588361 BICRAQ9NZM4 1560 aa23.31■■□□□ 1.32
KDM4B-206ENST00000588361 WRNQ14191 1432 aaPredicted RBP eCLIP23.3■■□□□ 1.323e-6■■■■■ 43.9
KDM4B-206ENST00000588361 HNRNPUL2Q1KMD3 747 aaKnown RBP23.2■■□□□ 1.3
KDM4B-206ENST00000588361 EEA1Q15075 1411 aa23.2■■□□□ 1.3
KDM4B-206ENST00000588361 GOLGA3Q08378 1498 aa23.18■■□□□ 1.3
KDM4B-206ENST00000588361 MYT1Q01538 1121 aa23.16■■□□□ 1.3
KDM4B-206ENST00000588361 DIEXFQ68CQ4 756 aaKnown RBP23.15■■□□□ 1.3
KDM4B-206ENST00000588361 ATAD2BQ9ULI0 1458 aa23.13■■□□□ 1.29
KDM4B-206ENST00000588361 CENPBP07199 599 aaPredicted RBP23.12■■□□□ 1.29
KDM4B-206ENST00000588361 BAZ1BQ9UIG0 1483 aaKnown RBP23.12■■□□□ 1.29
KDM4B-206ENST00000588361 SYNJ1O43426 1573 aa23.1■■□□□ 1.29
KDM4B-206ENST00000588361 APLP2Q06481 763 aa23.06■■□□□ 1.28
KDM4B-206ENST00000588361 CLIP1P30622 1438 aa23.03■■□□□ 1.28
KDM4B-206ENST00000588361 YTHDC1Q96MU7 727 aaKnown RBP23.03■■□□□ 1.28
KDM4B-206ENST00000588361 CEP164Q9UPV0 1460 aa23.02■■□□□ 1.28
KDM4B-206ENST00000588361 PEG3Q9GZU2 1588 aa23.01■■□□□ 1.27
KDM4B-206ENST00000588361 RAPGEF2Q9Y4G8 1499 aa22.97■■□□□ 1.27
KDM4B-206ENST00000588361 ZNF316A6NFI3 1004 aaPredicted RBP22.87■■□□□ 1.25
KDM4B-206ENST00000588361 VPS8Q8N3P4 1428 aa22.84■■□□□ 1.25
KDM4B-206ENST00000588361 KIF21BO75037 1637 aa22.83■■□□□ 1.24
KDM4B-206ENST00000588361 KANK4Q5T7N3 995 aaPredicted RBP22.71■■□□□ 1.23
KDM4B-206ENST00000588361 TOP2BQ02880 1626 aa22.7■■□□□ 1.22
KDM4B-206ENST00000588361 ITGAEP38570 1179 aa22.67■■□□□ 1.22
KDM4B-206ENST00000588361 MIER1Q8N108 512 aa22.66■■□□□ 1.22
KDM4B-206ENST00000588361 NCAPD3P42695 1498 aa22.59■■□□□ 1.21
KDM4B-206ENST00000588361 CUX1P39880 1505 aa22.58■■□□□ 1.21
KDM4B-206ENST00000588361 PRXQ9BXM0 1461 aa22.58■■□□□ 1.2
KDM4B-206ENST00000588361 KIF27Q86VH2 1401 aa22.56■■□□□ 1.2
KDM4B-206ENST00000588361 ARAP1Q96P48 1450 aa22.54■■□□□ 1.2
KDM4B-206ENST00000588361 BIVM-ERCC5R4GMW8 1640 aa22.51■■□□□ 1.19
KDM4B-206ENST00000588361 ATP1B4Q9UN42 357 aaPredicted RBP22.47■■□□□ 1.19
KDM4B-206ENST00000588361 HMGXB3Q12766 1538 aa22.46■■□□□ 1.19
KDM4B-206ENST00000588361 CFTRP13569 1480 aa22.46■■□□□ 1.19
KDM4B-206ENST00000588361 P3H3Q8IVL6 736 aa22.45■■□□□ 1.18
KDM4B-206ENST00000588361 ERICH3Q5RHP9 1530 aa22.45■■□□□ 1.18
KDM4B-206ENST00000588361 DHX57Q6P158 1386 aaKnown RBP22.42■■□□□ 1.18
KDM4B-206ENST00000588361 CUX2O14529 1486 aa22.41■■□□□ 1.18
KDM4B-206ENST00000588361 ARHGAP35Q9NRY4 1499 aa22.37■■□□□ 1.17
KDM4B-206ENST00000588361 IGF1RP08069 1367 aa22.36■■□□□ 1.17
KDM4B-206ENST00000588361 CCNB3Q8WWL7 1395 aa22.32■■□□□ 1.16
KDM4B-206ENST00000588361 CADPSQ9ULU8 1353 aa22.3■■□□□ 1.16
KDM4B-206ENST00000588361 CARMIL1Q5VZK9 1371 aa22.3■■□□□ 1.16
KDM4B-206ENST00000588361 FAM50AQ14320 339 aaKnown RBP22.29■■□□□ 1.16
KDM4B-206ENST00000588361 RRBP1Q9P2E9 1410 aaKnown RBP22.25■■□□□ 1.15
KDM4B-206ENST00000588361 CLSPNQ9HAW4 1339 aa22.24■■□□□ 1.15
KDM4B-206ENST00000588361 FGD5Q6ZNL6 1462 aa22.24■■□□□ 1.15
KDM4B-206ENST00000588361 SUPT16HQ9Y5B9 1047 aaKnown RBP22.21■■□□□ 1.15
KDM4B-206ENST00000588361 RAB3GAP2Q9H2M9 1393 aa22.17■■□□□ 1.14
KDM4B-206ENST00000588361 SIN3AQ96ST3 1273 aa22.13■■□□□ 1.13
KDM4B-206ENST00000588361 BCL11AQ9H165 835 aa22.12■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms