RNA–Protein interactions for RNA: ENST00000252699.6

ACTN4-201, Transcript of actinin alpha 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ACTN4, Length 4,963 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN4-201ENST00000252699 NISCHQ9Y2I1 1504 aa31.45■■■□□ 2.63
ACTN4-201ENST00000252699 DCAF8L2P0C7V8 631 aa30.72■■■□□ 2.51
ACTN4-201ENST00000252699 SUPT5HO00267 1087 aaKnown RBP29.09■■■□□ 2.25
ACTN4-201ENST00000252699 SHROOM4Q9ULL8 1493 aa29.05■■■□□ 2.24
ACTN4-201ENST00000252699 EHMT2Q96KQ7 1210 aa27.66■■■□□ 2.02
ACTN4-201ENST00000252699 FAM9AQ8IZU1 332 aaPredicted RBP27.29■■□□□ 1.96
ACTN4-201ENST00000252699 TRIM41Q8WV44 630 aa27.03■■□□□ 1.92
ACTN4-201ENST00000252699 APLP2Q06481 763 aa26.89■■□□□ 1.9
ACTN4-201ENST00000252699 ABCC9O60706 1549 aa26.88■■□□□ 1.89
ACTN4-201ENST00000252699 TTBK1Q5TCY1 1321 aaPredicted RBP26.62■■□□□ 1.85
ACTN4-201ENST00000252699 RANGAP1P46060 587 aaPredicted RBP26.61■■□□□ 1.85
ACTN4-201ENST00000252699 PCGF6Q9BYE7 350 aa26.55■■□□□ 1.84
ACTN4-201ENST00000252699 UBTFP17480 764 aaKnown RBP26.49■■□□□ 1.83
ACTN4-201ENST00000252699 PABPN1Q86U42 306 aaKnown RBP eCLIP26.41■■□□□ 1.827e-9■■■□□ 16
ACTN4-201ENST00000252699 CHIC1Q5VXU3 224 aa26.35■■□□□ 1.81
ACTN4-201ENST00000252699 ATP1B4Q9UN42 357 aaPredicted RBP26.23■■□□□ 1.79
ACTN4-201ENST00000252699 ZCCHC6Q5VYS8 1495 aaKnown RBP26.1■■□□□ 1.77
ACTN4-201ENST00000252699 CCDC180Q9P1Z9 1646 aa26.06■■□□□ 1.76
ACTN4-201ENST00000252699 LOC105371045A0A1W2PR82 267 aa26.06■■□□□ 1.76
ACTN4-201ENST00000252699 PPARGC1BQ86YN6 1023 aaKnown RBP25.97■■□□□ 1.75
ACTN4-201ENST00000252699 CCER1Q8TC90 406 aaPredicted RBP25.93■■□□□ 1.74
ACTN4-201ENST00000252699 ZEB1P37275 1124 aaPredicted RBP25.82■■□□□ 1.72
ACTN4-201ENST00000252699 SCRIBQ14160 1630 aa25.76■■□□□ 1.71
ACTN4-201ENST00000252699 TRIM26Q12899 539 aaPredicted RBP25.72■■□□□ 1.71
ACTN4-201ENST00000252699 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.46■■□□□ 1.67
ACTN4-201ENST00000252699 HNRNPUL2Q1KMD3 747 aaKnown RBP25.46■■□□□ 1.67
ACTN4-201ENST00000252699 ITGAEP38570 1179 aa25.43■■□□□ 1.66
ACTN4-201ENST00000252699 RB1CC1Q8TDY2 1594 aa25.31■■□□□ 1.64
ACTN4-201ENST00000252699 PELP1Q8IZL8 1130 aaKnown RBP25.23■■□□□ 1.63
ACTN4-201ENST00000252699 HRCP23327 699 aa25.21■■□□□ 1.63
ACTN4-201ENST00000252699 NACADO15069 1562 aa25.2■■□□□ 1.63
ACTN4-201ENST00000252699 CSRNP3Q8WYN3 585 aa25.17■■□□□ 1.62
ACTN4-201ENST00000252699 CENPBP07199 599 aaPredicted RBP25.11■■□□□ 1.61
ACTN4-201ENST00000252699 MYT1LQ9UL68 1186 aa25.05■■□□□ 1.6
ACTN4-201ENST00000252699 RSF1Q96T23 1441 aaPredicted RBP25.04■■□□□ 1.6
ACTN4-201ENST00000252699 DCAF1Q9Y4B6 1507 aa25.03■■□□□ 1.6
ACTN4-201ENST00000252699 FBLN2P98095 1184 aa24.99■■□□□ 1.59
ACTN4-201ENST00000252699 FAM50AQ14320 339 aaKnown RBP24.94■■□□□ 1.58
ACTN4-201ENST00000252699 YTHDC1Q96MU7 727 aaKnown RBP24.86■■□□□ 1.57
ACTN4-201ENST00000252699 P3H3Q8IVL6 736 aa24.85■■□□□ 1.57
ACTN4-201ENST00000252699 CECR2Q9BXF3 1484 aa24.71■■□□□ 1.55
ACTN4-201ENST00000252699 POLR3GLQ9BT43 218 aa24.66■■□□□ 1.54
ACTN4-201ENST00000252699 ARID3CA6NKF2 412 aa24.64■■□□□ 1.53
ACTN4-201ENST00000252699 TRIM52Q96A61 297 aa24.64■■□□□ 1.53
ACTN4-201ENST00000252699 BAZ1BQ9UIG0 1483 aaKnown RBP24.63■■□□□ 1.53
ACTN4-201ENST00000252699 BAZ1AQ9NRL2 1556 aaPredicted RBP24.62■■□□□ 1.53
ACTN4-201ENST00000252699 NEFLP07196 543 aa24.53■■□□□ 1.52
ACTN4-201ENST00000252699 NEUROD1Q13562 356 aa24.51■■□□□ 1.51
ACTN4-201ENST00000252699 WRNQ14191 1432 aaPredicted RBP eCLIP24.46■■□□□ 1.51
ACTN4-201ENST00000252699 CNGB1Q14028 1251 aaPredicted RBP24.42■■□□□ 1.5
ACTN4-201ENST00000252699 MYO15BQ96JP2 1530 aa24.41■■□□□ 1.5
ACTN4-201ENST00000252699 DIEXFQ68CQ4 756 aaKnown RBP24.41■■□□□ 1.5
ACTN4-201ENST00000252699 CDK11AQ9UQ88 783 aaPredicted RBP24.4■■□□□ 1.5
ACTN4-201ENST00000252699 MROH2BQ7Z745 1585 aa24.38■■□□□ 1.49
ACTN4-201ENST00000252699 EEA1Q15075 1411 aa24.35■■□□□ 1.49
ACTN4-201ENST00000252699 ZNF777Q9ULD5 760 aaPredicted RBP24.33■■□□□ 1.48
ACTN4-201ENST00000252699 CLIP1P30622 1438 aa24.29■■□□□ 1.48
ACTN4-201ENST00000252699 CHMP7Q8WUX9 453 aaPredicted RBP24.24■■□□□ 1.47
ACTN4-201ENST00000252699 ZNF326Q5BKZ1 582 aaKnown RBP24.22■■□□□ 1.47
ACTN4-201ENST00000252699 GOLGA3Q08378 1498 aa24.2■■□□□ 1.47
ACTN4-201ENST00000252699 KIF27Q86VH2 1401 aa24.18■■□□□ 1.46
ACTN4-201ENST00000252699 CEP162Q5TB80 1403 aa24.15■■□□□ 1.46
ACTN4-201ENST00000252699 CCDC88BA6NC98 1476 aa24.15■■□□□ 1.46
ACTN4-201ENST00000252699 SLC4A1APQ9BWU0 796 aaKnown RBP24.14■■□□□ 1.46
ACTN4-201ENST00000252699 ZNF316A6NFI3 1004 aaPredicted RBP24.1■■□□□ 1.45
ACTN4-201ENST00000252699 MTUS2Q5JR59 1369 aa24.07■■□□□ 1.44
ACTN4-201ENST00000252699 SMARCA2P51531 1590 aa24.06■■□□□ 1.44
ACTN4-201ENST00000252699 TNIKQ9UKE5 1360 aa24.06■■□□□ 1.44
ACTN4-201ENST00000252699 ERICH6Q7L0X2 663 aa24.06■■□□□ 1.44
ACTN4-201ENST00000252699 CEP164Q9UPV0 1460 aa24.05■■□□□ 1.44
ACTN4-201ENST00000252699 NPM1P06748 294 aaKnown RBP eCLIP24.02■■□□□ 1.44
ACTN4-201ENST00000252699 CHIC2Q9UKJ5 165 aa24■■□□□ 1.43
ACTN4-201ENST00000252699 SOGA1O94964 1423 aa23.99■■□□□ 1.43
ACTN4-201ENST00000252699 WIZO95785 1651 aa23.99■■□□□ 1.43
ACTN4-201ENST00000252699 ERCC6Q03468 1493 aa23.94■■□□□ 1.42
ACTN4-201ENST00000252699 ANP32CO43423 234 aa23.93■■□□□ 1.42
ACTN4-201ENST00000252699 TOP2AP11388 1531 aaKnown RBP23.92■■□□□ 1.42
ACTN4-201ENST00000252699 ABCC8Q09428 1581 aa23.91■■□□□ 1.42
ACTN4-201ENST00000252699 CUX2O14529 1486 aa23.89■■□□□ 1.41
ACTN4-201ENST00000252699 TONSLQ96HA7 1378 aa23.86■■□□□ 1.41
ACTN4-201ENST00000252699 ATAD2BQ9ULI0 1458 aa23.86■■□□□ 1.41
ACTN4-201ENST00000252699 TSPY4P0CV99 314 aa23.85■■□□□ 1.41
ACTN4-201ENST00000252699 TSPY10P0CW01 314 aa23.85■■□□□ 1.41
ACTN4-201ENST00000252699 CARMIL1Q5VZK9 1371 aa23.84■■□□□ 1.41
ACTN4-201ENST00000252699 SMARCA4P51532 1647 aa23.8■■□□□ 1.4
ACTN4-201ENST00000252699 PLEKHD1A6NEE1 506 aa23.78■■□□□ 1.4
ACTN4-201ENST00000252699 PDS5BQ9NTI5 1447 aa23.75■■□□□ 1.39
ACTN4-201ENST00000252699 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.74■■□□□ 1.398e-8■□□□□ 10.6
ACTN4-201ENST00000252699 CADPSQ9ULU8 1353 aa23.74■■□□□ 1.39
ACTN4-201ENST00000252699 KCNH8Q96L42 1107 aa23.73■■□□□ 1.39
ACTN4-201ENST00000252699 RRP7BPQ9NSQ0 103 aa23.72■■□□□ 1.39
ACTN4-201ENST00000252699 BCANQ96GW7 911 aa23.68■■□□□ 1.38
ACTN4-201ENST00000252699 CHGAP10645 457 aaKnown RBP23.68■■□□□ 1.38
ACTN4-201ENST00000252699 ESF1Q9H501 851 aaKnown RBP23.67■■□□□ 1.38
ACTN4-201ENST00000252699 TDRD9Q8NDG6 1382 aaKnown RBP23.64■■□□□ 1.38
ACTN4-201ENST00000252699 CFDP1Q9UEE9 299 aaPredicted RBP23.61■■□□□ 1.37
ACTN4-201ENST00000252699 FHAD1B1AJZ9 1412 aa23.59■■□□□ 1.37
ACTN4-201ENST00000252699 DDX10Q13206 875 aaKnown RBP23.57■■□□□ 1.36
ACTN4-201ENST00000252699 EIF4G1Q04637 1599 aaKnown RBP23.56■■□□□ 1.36
ACTN4-201ENST00000252699 STAG3Q9UJ98 1225 aa23.55■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms