Protein–RNA interactions for Protein: Q9UBI1

COMMD3, COMM domain-containing protein 3, humanhuman

Predictions only

Length 195 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3Q9UBI1 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
COMMD3Q9UBI1 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
COMMD3Q9UBI1 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
COMMD3Q9UBI1 AC097639.1-201ENST00000565519 1891 ntBASIC21.03■□□□□ 0.96
COMMD3Q9UBI1 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
COMMD3Q9UBI1 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
COMMD3Q9UBI1 AC096887.2-201ENST00000623443 1957 ntBASIC21.02■□□□□ 0.96
COMMD3Q9UBI1 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC21.02■□□□□ 0.96
COMMD3Q9UBI1 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC21.02■□□□□ 0.95
COMMD3Q9UBI1 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC21.01■□□□□ 0.95
COMMD3Q9UBI1 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
COMMD3Q9UBI1 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
COMMD3Q9UBI1 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC21■□□□□ 0.95
COMMD3Q9UBI1 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COMMD3Q9UBI1 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC21■□□□□ 0.95
COMMD3Q9UBI1 MIR762-201ENST00000390236 83 ntBASIC21■□□□□ 0.95
COMMD3Q9UBI1 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COMMD3Q9UBI1 EED-207ENST00000528180 1745 ntTSL 5 BASIC21■□□□□ 0.95
COMMD3Q9UBI1 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC21■□□□□ 0.95
COMMD3Q9UBI1 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COMMD3Q9UBI1 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC20.99■□□□□ 0.95
COMMD3Q9UBI1 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
COMMD3Q9UBI1 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC20.99■□□□□ 0.95
COMMD3Q9UBI1 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
COMMD3Q9UBI1 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COMMD3Q9UBI1 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.99■□□□□ 0.95
COMMD3Q9UBI1 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
COMMD3Q9UBI1 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC20.98■□□□□ 0.95
COMMD3Q9UBI1 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC20.98■□□□□ 0.95
COMMD3Q9UBI1 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC20.98■□□□□ 0.95
COMMD3Q9UBI1 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
COMMD3Q9UBI1 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
COMMD3Q9UBI1 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COMMD3Q9UBI1 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
COMMD3Q9UBI1 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COMMD3Q9UBI1 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
COMMD3Q9UBI1 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
COMMD3Q9UBI1 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COMMD3Q9UBI1 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COMMD3Q9UBI1 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
COMMD3Q9UBI1 AC108673.1-201ENST00000510422 1159 ntBASIC20.96■□□□□ 0.95
COMMD3Q9UBI1 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COMMD3Q9UBI1 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
COMMD3Q9UBI1 AP003733.4-201ENST00000623785 1697 ntBASIC20.96■□□□□ 0.95
COMMD3Q9UBI1 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
COMMD3Q9UBI1 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
COMMD3Q9UBI1 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
COMMD3Q9UBI1 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
COMMD3Q9UBI1 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC20.95■□□□□ 0.94
COMMD3Q9UBI1 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC20.95■□□□□ 0.94
COMMD3Q9UBI1 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COMMD3Q9UBI1 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COMMD3Q9UBI1 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COMMD3Q9UBI1 LINC00543-201ENST00000567234 1845 ntBASIC20.94■□□□□ 0.94
COMMD3Q9UBI1 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
COMMD3Q9UBI1 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
COMMD3Q9UBI1 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
COMMD3Q9UBI1 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC20.94■□□□□ 0.94
COMMD3Q9UBI1 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COMMD3Q9UBI1 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC20.94■□□□□ 0.94
COMMD3Q9UBI1 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
COMMD3Q9UBI1 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC20.94■□□□□ 0.94
COMMD3Q9UBI1 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COMMD3Q9UBI1 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
COMMD3Q9UBI1 AC110285.7-201ENST00000624417 1536 ntBASIC20.94■□□□□ 0.94
COMMD3Q9UBI1 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COMMD3Q9UBI1 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC20.93■□□□□ 0.94
COMMD3Q9UBI1 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
COMMD3Q9UBI1 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC20.93■□□□□ 0.94
COMMD3Q9UBI1 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COMMD3Q9UBI1 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
COMMD3Q9UBI1 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COMMD3Q9UBI1 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
COMMD3Q9UBI1 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COMMD3Q9UBI1 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC20.92■□□□□ 0.94
COMMD3Q9UBI1 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
COMMD3Q9UBI1 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC20.92■□□□□ 0.94
COMMD3Q9UBI1 PEX7-203ENST00000541292 945 ntTSL 5 BASIC20.92■□□□□ 0.94
COMMD3Q9UBI1 MIR6090-201ENST00000622481 60 ntBASIC20.92■□□□□ 0.94
COMMD3Q9UBI1 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC20.92■□□□□ 0.94
COMMD3Q9UBI1 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
COMMD3Q9UBI1 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC20.92■□□□□ 0.94
COMMD3Q9UBI1 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
COMMD3Q9UBI1 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC20.92■□□□□ 0.94
COMMD3Q9UBI1 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC20.92■□□□□ 0.94
COMMD3Q9UBI1 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COMMD3Q9UBI1 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COMMD3Q9UBI1 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
COMMD3Q9UBI1 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COMMD3Q9UBI1 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COMMD3Q9UBI1 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COMMD3Q9UBI1 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
COMMD3Q9UBI1 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC20.91■□□□□ 0.94
COMMD3Q9UBI1 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC20.91■□□□□ 0.94
COMMD3Q9UBI1 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
COMMD3Q9UBI1 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COMMD3Q9UBI1 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COMMD3Q9UBI1 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC20.9■□□□□ 0.94
COMMD3Q9UBI1 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC20.9■□□□□ 0.94
COMMD3Q9UBI1 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC20.9■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 63.3 ms