RNA–Protein interactions for RNA: ENST00000239243.6

MSX2-201, Transcript of msh homeobox 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX2, Length 2,241 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2-201ENST00000239243 NISCHQ9Y2I1 1504 aa51.28■■■■■ 5.8
MSX2-201ENST00000239243 CCDC180Q9P1Z9 1646 aa44.47■■■■■ 4.71
MSX2-201ENST00000239243 ZCCHC6Q5VYS8 1495 aaKnown RBP43.2■■■■■ 4.51
MSX2-201ENST00000239243 DCAF1Q9Y4B6 1507 aa42.43■■■■■ 4.38
MSX2-201ENST00000239243 SHROOM4Q9ULL8 1493 aa42.22■■■■■ 4.35
MSX2-201ENST00000239243 DCAF8L2P0C7V8 631 aa42.16■■■■■ 4.34
MSX2-201ENST00000239243 MYO15BQ96JP2 1530 aa41.71■■■■■ 4.27
MSX2-201ENST00000239243 ABCC9O60706 1549 aa41.48■■■■■ 4.23
MSX2-201ENST00000239243 NACADO15069 1562 aa41.28■■■■■ 4.2
MSX2-201ENST00000239243 SCRIBQ14160 1630 aa40.95■■■■■ 4.15
MSX2-201ENST00000239243 SUPT5HO00267 1087 aaKnown RBP40.94■■■■■ 4.14
MSX2-201ENST00000239243 RB1CC1Q8TDY2 1594 aa40.79■■■■■ 4.12
MSX2-201ENST00000239243 RSF1Q96T23 1441 aaPredicted RBP40■■■■□ 3.99
MSX2-201ENST00000239243 UNC13AQ9UPW8 1703 aa39.95■■■■□ 3.99
MSX2-201ENST00000239243 CECR2Q9BXF3 1484 aa39.76■■■■□ 3.96
MSX2-201ENST00000239243 MROH2BQ7Z745 1585 aa39.62■■■■□ 3.93
MSX2-201ENST00000239243 BAZ1AQ9NRL2 1556 aaPredicted RBP39.58■■■■□ 3.93
MSX2-201ENST00000239243 BICRAQ9NZM4 1560 aa39.5■■■■□ 3.91
MSX2-201ENST00000239243 CHIC1Q5VXU3 224 aa39.49■■■■□ 3.91
MSX2-201ENST00000239243 WIZO95785 1651 aa39.34■■■■□ 3.89
MSX2-201ENST00000239243 SMARCA4P51532 1647 aa39.31■■■■□ 3.88
MSX2-201ENST00000239243 PABPN1Q86U42 306 aaKnown RBP eCLIP39.22■■■■□ 3.87
MSX2-201ENST00000239243 TOP2AP11388 1531 aaKnown RBP38.97■■■■□ 3.83
MSX2-201ENST00000239243 PEG3Q9GZU2 1588 aa38.81■■■■□ 3.8
MSX2-201ENST00000239243 SMARCA2P51531 1590 aa38.61■■■■□ 3.77
MSX2-201ENST00000239243 CCDC88BA6NC98 1476 aa38.56■■■■□ 3.76
MSX2-201ENST00000239243 EIF4G1Q04637 1599 aaKnown RBP38.52■■■■□ 3.76
MSX2-201ENST00000239243 ATAD2BQ9ULI0 1458 aa38.5■■■■□ 3.75
MSX2-201ENST00000239243 TRIM41Q8WV44 630 aa38.48■■■■□ 3.75
MSX2-201ENST00000239243 BAZ1BQ9UIG0 1483 aaKnown RBP38.34■■■■□ 3.73
MSX2-201ENST00000239243 HMGXB3Q12766 1538 aa38.1■■■■□ 3.69
MSX2-201ENST00000239243 NCAPD3P42695 1498 aa38.08■■■■□ 3.69
MSX2-201ENST00000239243 LOC105371045A0A1W2PR82 267 aa37.97■■■■□ 3.67
MSX2-201ENST00000239243 ABCC8Q09428 1581 aa37.94■■■■□ 3.66
MSX2-201ENST00000239243 FAM9AQ8IZU1 332 aaPredicted RBP37.76■■■■□ 3.63
MSX2-201ENST00000239243 WRNQ14191 1432 aaPredicted RBP eCLIP37.66■■■■□ 3.62
MSX2-201ENST00000239243 CC2D2AQ9P2K1 1620 aa37.57■■■■□ 3.6
MSX2-201ENST00000239243 EEA1Q15075 1411 aa37.48■■■■□ 3.59
MSX2-201ENST00000239243 SYNJ1O43426 1573 aa37.45■■■■□ 3.59
MSX2-201ENST00000239243 CFTRP13569 1480 aa37.4■■■■□ 3.58
MSX2-201ENST00000239243 SOGA1O94964 1423 aa37.35■■■■□ 3.57
MSX2-201ENST00000239243 TOP2BQ02880 1626 aa37.29■■■■□ 3.56
MSX2-201ENST00000239243 PRDM2Q13029 1718 aa37.27■■■■□ 3.56
MSX2-201ENST00000239243 BIVM-ERCC5R4GMW8 1640 aa37.24■■■■□ 3.55
MSX2-201ENST00000239243 EHMT2Q96KQ7 1210 aa37.18■■■■□ 3.54
MSX2-201ENST00000239243 CSRNP3Q8WYN3 585 aa37.17■■■■□ 3.54
MSX2-201ENST00000239243 CADPSQ9ULU8 1353 aa37.15■■■■□ 3.54
MSX2-201ENST00000239243 RUSC2Q8N2Y8 1516 aa37.14■■■■□ 3.54
MSX2-201ENST00000239243 CUX1P39880 1505 aa37.01■■■■□ 3.52
MSX2-201ENST00000239243 GOLGA3Q08378 1498 aa36.97■■■■□ 3.51
MSX2-201ENST00000239243 TNIKQ9UKE5 1360 aa36.95■■■■□ 3.51
MSX2-201ENST00000239243 KIF21BO75037 1637 aa36.93■■■■□ 3.5
MSX2-201ENST00000239243 CEP164Q9UPV0 1460 aa36.92■■■■□ 3.5
MSX2-201ENST00000239243 PCGF6Q9BYE7 350 aa36.91■■■■□ 3.5
MSX2-201ENST00000239243 TRIM26Q12899 539 aaPredicted RBP36.81■■■■□ 3.48
MSX2-201ENST00000239243 CEP162Q5TB80 1403 aa36.79■■■■□ 3.48
MSX2-201ENST00000239243 UBTFP17480 764 aaKnown RBP36.77■■■■□ 3.48
MSX2-201ENST00000239243 FANCD2Q9BXW9 1451 aa36.75■■■■□ 3.47
MSX2-201ENST00000239243 LAMC3Q9Y6N6 1575 aa36.72■■■■□ 3.47
MSX2-201ENST00000239243 KIF27Q86VH2 1401 aa36.68■■■■□ 3.46
MSX2-201ENST00000239243 NESP48681 1621 aa36.59■■■■□ 3.45
MSX2-201ENST00000239243 ERICH3Q5RHP9 1530 aa36.59■■■■□ 3.45
MSX2-201ENST00000239243 RAPGEF2Q9Y4G8 1499 aa36.58■■■■□ 3.45
MSX2-201ENST00000239243 PRXQ9BXM0 1461 aa36.55■■■■□ 3.44
MSX2-201ENST00000239243 FGD5Q6ZNL6 1462 aa36.54■■■■□ 3.44
MSX2-201ENST00000239243 DNMBPQ6XZF7 1577 aa36.54■■■■□ 3.44
MSX2-201ENST00000239243 CUX2O14529 1486 aa36.42■■■■□ 3.42
MSX2-201ENST00000239243 PDS5BQ9NTI5 1447 aa36.42■■■■□ 3.42
MSX2-201ENST00000239243 TOPBP1Q92547 1522 aa36.41■■■■□ 3.42
MSX2-201ENST00000239243 CLIP1P30622 1438 aa36.38■■■■□ 3.41
MSX2-201ENST00000239243 HRCP23327 699 aa36.35■■■■□ 3.41
MSX2-201ENST00000239243 DNAJC5BQ9UF47 199 aa36.33■■■■□ 3.41
MSX2-201ENST00000239243 POLA1P09884 1462 aaPredicted RBP36.27■■■■□ 3.4
MSX2-201ENST00000239243 IGF1RP08069 1367 aa36.24■■■■□ 3.39
MSX2-201ENST00000239243 ABCA10Q8WWZ4 1543 aa36.24■■■■□ 3.39
MSX2-201ENST00000239243 URB2Q14146 1524 aaKnown RBP36.22■■■■□ 3.39
MSX2-201ENST00000239243 KIF21AQ7Z4S6 1674 aa36.18■■■■□ 3.38
MSX2-201ENST00000239243 VPS8Q8N3P4 1428 aa36.16■■■■□ 3.38
MSX2-201ENST00000239243 RAD54L2Q9Y4B4 1467 aa36.14■■■■□ 3.38
MSX2-201ENST00000239243 PPARGC1BQ86YN6 1023 aaKnown RBP36.14■■■■□ 3.38
MSX2-201ENST00000239243 CARMIL1Q5VZK9 1371 aa36.09■■■■□ 3.37
MSX2-201ENST00000239243 WDR97A6NE52 1622 aa36.05■■■■□ 3.36
MSX2-201ENST00000239243 CUL7Q14999 1698 aa35.97■■■■□ 3.35
MSX2-201ENST00000239243 RANGAP1P46060 587 aaPredicted RBP35.94■■■■□ 3.34
MSX2-201ENST00000239243 ARAP1Q96P48 1450 aa35.92■■■■□ 3.34
MSX2-201ENST00000239243 MRC2Q9UBG0 1479 aa35.9■■■■□ 3.34
MSX2-201ENST00000239243 ABCA5Q8WWZ7 1642 aa35.89■■■■□ 3.34
MSX2-201ENST00000239243 APLP2Q06481 763 aa35.87■■■■□ 3.33
MSX2-201ENST00000239243 ARHGAP35Q9NRY4 1499 aa35.81■■■■□ 3.32
MSX2-201ENST00000239243 TARBP1Q13395 1621 aaKnown RBP35.81■■■■□ 3.32
MSX2-201ENST00000239243 GAPVD1Q14C86 1478 aa35.79■■■■□ 3.32
MSX2-201ENST00000239243 TTBK1Q5TCY1 1321 aaPredicted RBP35.76■■■■□ 3.31
MSX2-201ENST00000239243 TDRD9Q8NDG6 1382 aaKnown RBP35.74■■■■□ 3.31
MSX2-201ENST00000239243 ZEB1P37275 1124 aaPredicted RBP35.7■■■■□ 3.31
MSX2-201ENST00000239243 WDR62O43379 1518 aa35.68■■■■□ 3.3
MSX2-201ENST00000239243 CTTNBP2Q8WZ74 1663 aa35.65■■■■□ 3.3
MSX2-201ENST00000239243 EFCAB5A4FU69 1503 aa35.56■■■■□ 3.28
MSX2-201ENST00000239243 ERCC6Q03468 1493 aa35.56■■■■□ 3.28
MSX2-201ENST00000239243 IFT140Q96RY7 1462 aa35.56■■■■□ 3.28
MSX2-201ENST00000239243 PBRM1Q86U86 1689 aa35.55■■■■□ 3.28
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms