RNA–Protein interactions for RNA: ENST00000239243.6

MSX2-201, Transcript of msh homeobox 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX2, Length 2,241 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2-201ENST00000239243 NISCHQ9Y2I1 1504 aa51.28■■■■■ 5.8
MSX2-201ENST00000239243 CCDC180Q9P1Z9 1646 aa44.47■■■■■ 4.71
MSX2-201ENST00000239243 ZCCHC6Q5VYS8 1495 aaKnown RBP43.2■■■■■ 4.51
MSX2-201ENST00000239243 DCAF1Q9Y4B6 1507 aa42.43■■■■■ 4.38
MSX2-201ENST00000239243 SHROOM4Q9ULL8 1493 aa42.22■■■■■ 4.35
MSX2-201ENST00000239243 DCAF8L2P0C7V8 631 aa42.16■■■■■ 4.34
MSX2-201ENST00000239243 MYO15BQ96JP2 1530 aa41.71■■■■■ 4.27
MSX2-201ENST00000239243 ABCC9O60706 1549 aa41.48■■■■■ 4.23
MSX2-201ENST00000239243 NACADO15069 1562 aa41.28■■■■■ 4.2
MSX2-201ENST00000239243 SCRIBQ14160 1630 aa40.95■■■■■ 4.15
MSX2-201ENST00000239243 SUPT5HO00267 1087 aaKnown RBP40.94■■■■■ 4.14
MSX2-201ENST00000239243 RB1CC1Q8TDY2 1594 aa40.79■■■■■ 4.12
MSX2-201ENST00000239243 RSF1Q96T23 1441 aaPredicted RBP40■■■■□ 3.99
MSX2-201ENST00000239243 UNC13AQ9UPW8 1703 aa39.95■■■■□ 3.99
MSX2-201ENST00000239243 CECR2Q9BXF3 1484 aa39.76■■■■□ 3.96
MSX2-201ENST00000239243 MROH2BQ7Z745 1585 aa39.62■■■■□ 3.93
MSX2-201ENST00000239243 BAZ1AQ9NRL2 1556 aaPredicted RBP39.58■■■■□ 3.93
MSX2-201ENST00000239243 BICRAQ9NZM4 1560 aa39.5■■■■□ 3.91
MSX2-201ENST00000239243 CHIC1Q5VXU3 224 aa39.49■■■■□ 3.91
MSX2-201ENST00000239243 WIZO95785 1651 aa39.34■■■■□ 3.89
MSX2-201ENST00000239243 SMARCA4P51532 1647 aa39.31■■■■□ 3.88
MSX2-201ENST00000239243 PABPN1Q86U42 306 aaKnown RBP eCLIP39.22■■■■□ 3.87
MSX2-201ENST00000239243 TOP2AP11388 1531 aaKnown RBP38.97■■■■□ 3.83
MSX2-201ENST00000239243 PEG3Q9GZU2 1588 aa38.81■■■■□ 3.8
MSX2-201ENST00000239243 SMARCA2P51531 1590 aa38.61■■■■□ 3.77
MSX2-201ENST00000239243 CCDC88BA6NC98 1476 aa38.56■■■■□ 3.76
MSX2-201ENST00000239243 EIF4G1Q04637 1599 aaKnown RBP38.52■■■■□ 3.76
MSX2-201ENST00000239243 ATAD2BQ9ULI0 1458 aa38.5■■■■□ 3.75
MSX2-201ENST00000239243 TRIM41Q8WV44 630 aa38.48■■■■□ 3.75
MSX2-201ENST00000239243 BAZ1BQ9UIG0 1483 aaKnown RBP38.34■■■■□ 3.73
MSX2-201ENST00000239243 HMGXB3Q12766 1538 aa38.1■■■■□ 3.69
MSX2-201ENST00000239243 NCAPD3P42695 1498 aa38.08■■■■□ 3.69
MSX2-201ENST00000239243 LOC105371045A0A1W2PR82 267 aa37.97■■■■□ 3.67
MSX2-201ENST00000239243 ABCC8Q09428 1581 aa37.94■■■■□ 3.66
MSX2-201ENST00000239243 FAM9AQ8IZU1 332 aaPredicted RBP37.76■■■■□ 3.63
MSX2-201ENST00000239243 WRNQ14191 1432 aaPredicted RBP eCLIP37.66■■■■□ 3.62
MSX2-201ENST00000239243 CC2D2AQ9P2K1 1620 aa37.57■■■■□ 3.6
MSX2-201ENST00000239243 EEA1Q15075 1411 aa37.48■■■■□ 3.59
MSX2-201ENST00000239243 SYNJ1O43426 1573 aa37.45■■■■□ 3.59
MSX2-201ENST00000239243 CFTRP13569 1480 aa37.4■■■■□ 3.58
MSX2-201ENST00000239243 SOGA1O94964 1423 aa37.35■■■■□ 3.57
MSX2-201ENST00000239243 TOP2BQ02880 1626 aa37.29■■■■□ 3.56
MSX2-201ENST00000239243 PRDM2Q13029 1718 aa37.27■■■■□ 3.56
MSX2-201ENST00000239243 BIVM-ERCC5R4GMW8 1640 aa37.24■■■■□ 3.55
MSX2-201ENST00000239243 EHMT2Q96KQ7 1210 aa37.18■■■■□ 3.54
MSX2-201ENST00000239243 CSRNP3Q8WYN3 585 aa37.17■■■■□ 3.54
MSX2-201ENST00000239243 CADPSQ9ULU8 1353 aa37.15■■■■□ 3.54
MSX2-201ENST00000239243 RUSC2Q8N2Y8 1516 aa37.14■■■■□ 3.54
MSX2-201ENST00000239243 CUX1P39880 1505 aa37.01■■■■□ 3.52
MSX2-201ENST00000239243 GOLGA3Q08378 1498 aa36.97■■■■□ 3.51
MSX2-201ENST00000239243 TNIKQ9UKE5 1360 aa36.95■■■■□ 3.51
MSX2-201ENST00000239243 KIF21BO75037 1637 aa36.93■■■■□ 3.5
MSX2-201ENST00000239243 CEP164Q9UPV0 1460 aa36.92■■■■□ 3.5
MSX2-201ENST00000239243 PCGF6Q9BYE7 350 aa36.91■■■■□ 3.5
MSX2-201ENST00000239243 TRIM26Q12899 539 aaPredicted RBP36.81■■■■□ 3.48
MSX2-201ENST00000239243 CEP162Q5TB80 1403 aa36.79■■■■□ 3.48
MSX2-201ENST00000239243 UBTFP17480 764 aaKnown RBP36.77■■■■□ 3.48
MSX2-201ENST00000239243 FANCD2Q9BXW9 1451 aa36.75■■■■□ 3.47
MSX2-201ENST00000239243 LAMC3Q9Y6N6 1575 aa36.72■■■■□ 3.47
MSX2-201ENST00000239243 KIF27Q86VH2 1401 aa36.68■■■■□ 3.46
MSX2-201ENST00000239243 NESP48681 1621 aa36.59■■■■□ 3.45
MSX2-201ENST00000239243 ERICH3Q5RHP9 1530 aa36.59■■■■□ 3.45
MSX2-201ENST00000239243 RAPGEF2Q9Y4G8 1499 aa36.58■■■■□ 3.45
MSX2-201ENST00000239243 PRXQ9BXM0 1461 aa36.55■■■■□ 3.44
MSX2-201ENST00000239243 FGD5Q6ZNL6 1462 aa36.54■■■■□ 3.44
MSX2-201ENST00000239243 DNMBPQ6XZF7 1577 aa36.54■■■■□ 3.44
MSX2-201ENST00000239243 CUX2O14529 1486 aa36.42■■■■□ 3.42
MSX2-201ENST00000239243 PDS5BQ9NTI5 1447 aa36.42■■■■□ 3.42
MSX2-201ENST00000239243 TOPBP1Q92547 1522 aa36.41■■■■□ 3.42
MSX2-201ENST00000239243 CLIP1P30622 1438 aa36.38■■■■□ 3.41
MSX2-201ENST00000239243 HRCP23327 699 aa36.35■■■■□ 3.41
MSX2-201ENST00000239243 DNAJC5BQ9UF47 199 aa36.33■■■■□ 3.41
MSX2-201ENST00000239243 POLA1P09884 1462 aaPredicted RBP36.27■■■■□ 3.4
MSX2-201ENST00000239243 IGF1RP08069 1367 aa36.24■■■■□ 3.39
MSX2-201ENST00000239243 ABCA10Q8WWZ4 1543 aa36.24■■■■□ 3.39
MSX2-201ENST00000239243 URB2Q14146 1524 aaKnown RBP36.22■■■■□ 3.39
MSX2-201ENST00000239243 KIF21AQ7Z4S6 1674 aa36.18■■■■□ 3.38
MSX2-201ENST00000239243 VPS8Q8N3P4 1428 aa36.16■■■■□ 3.38
MSX2-201ENST00000239243 RAD54L2Q9Y4B4 1467 aa36.14■■■■□ 3.38
MSX2-201ENST00000239243 PPARGC1BQ86YN6 1023 aaKnown RBP36.14■■■■□ 3.38
MSX2-201ENST00000239243 CARMIL1Q5VZK9 1371 aa36.09■■■■□ 3.37
MSX2-201ENST00000239243 WDR97A6NE52 1622 aa36.05■■■■□ 3.36
MSX2-201ENST00000239243 CUL7Q14999 1698 aa35.97■■■■□ 3.35
MSX2-201ENST00000239243 RANGAP1P46060 587 aaPredicted RBP35.94■■■■□ 3.34
MSX2-201ENST00000239243 ARAP1Q96P48 1450 aa35.92■■■■□ 3.34
MSX2-201ENST00000239243 MRC2Q9UBG0 1479 aa35.9■■■■□ 3.34
MSX2-201ENST00000239243 ABCA5Q8WWZ7 1642 aa35.89■■■■□ 3.34
MSX2-201ENST00000239243 APLP2Q06481 763 aa35.87■■■■□ 3.33
MSX2-201ENST00000239243 ARHGAP35Q9NRY4 1499 aa35.81■■■■□ 3.32
MSX2-201ENST00000239243 TARBP1Q13395 1621 aaKnown RBP35.81■■■■□ 3.32
MSX2-201ENST00000239243 GAPVD1Q14C86 1478 aa35.79■■■■□ 3.32
MSX2-201ENST00000239243 TTBK1Q5TCY1 1321 aaPredicted RBP35.76■■■■□ 3.31
MSX2-201ENST00000239243 TDRD9Q8NDG6 1382 aaKnown RBP35.74■■■■□ 3.31
MSX2-201ENST00000239243 ZEB1P37275 1124 aaPredicted RBP35.7■■■■□ 3.31
MSX2-201ENST00000239243 WDR62O43379 1518 aa35.68■■■■□ 3.3
MSX2-201ENST00000239243 CTTNBP2Q8WZ74 1663 aa35.65■■■■□ 3.3
MSX2-201ENST00000239243 EFCAB5A4FU69 1503 aa35.56■■■■□ 3.28
MSX2-201ENST00000239243 ERCC6Q03468 1493 aa35.56■■■■□ 3.28
MSX2-201ENST00000239243 IFT140Q96RY7 1462 aa35.56■■■■□ 3.28
MSX2-201ENST00000239243 PBRM1Q86U86 1689 aa35.55■■■■□ 3.28
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms