RNA–Protein interactions for RNA: ENST00000567234.1

LINC00543-201, long intergenic non-protein coding RNA 543, humanhuman

BASIC

Gene LINC00543, Length 1,845 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00543-201ENST00000567234 NISCHQ9Y2I1 1504 aa51.27■■■■■ 5.8
LINC00543-201ENST00000567234 CCDC180Q9P1Z9 1646 aa44.85■■■■■ 4.77
LINC00543-201ENST00000567234 ZCCHC6Q5VYS8 1495 aaKnown RBP43.18■■■■■ 4.5
LINC00543-201ENST00000567234 ABCC9O60706 1549 aa42.9■■■■■ 4.46
LINC00543-201ENST00000567234 DCAF8L2P0C7V8 631 aa42.48■■■■■ 4.39
LINC00543-201ENST00000567234 DCAF1Q9Y4B6 1507 aa42.45■■■■■ 4.39
LINC00543-201ENST00000567234 SHROOM4Q9ULL8 1493 aa42.1■■■■■ 4.33
LINC00543-201ENST00000567234 MYO15BQ96JP2 1530 aa41.9■■■■■ 4.3
LINC00543-201ENST00000567234 NACADO15069 1562 aa41.84■■■■■ 4.29
LINC00543-201ENST00000567234 RB1CC1Q8TDY2 1594 aa41.61■■■■■ 4.25
LINC00543-201ENST00000567234 SCRIBQ14160 1630 aa41.29■■■■■ 4.2
LINC00543-201ENST00000567234 UNC13AQ9UPW8 1703 aa40.92■■■■■ 4.14
LINC00543-201ENST00000567234 SUPT5HO00267 1087 aaKnown RBP40.82■■■■■ 4.13
LINC00543-201ENST00000567234 BICRAQ9NZM4 1560 aa40.47■■■■■ 4.07
LINC00543-201ENST00000567234 PABPN1Q86U42 306 aaKnown RBP eCLIP40.37■■■■■ 4.05
LINC00543-201ENST00000567234 RSF1Q96T23 1441 aaPredicted RBP39.97■■■■□ 3.99
LINC00543-201ENST00000567234 CECR2Q9BXF3 1484 aa39.91■■■■□ 3.98
LINC00543-201ENST00000567234 MROH2BQ7Z745 1585 aa39.61■■■■□ 3.93
LINC00543-201ENST00000567234 BAZ1AQ9NRL2 1556 aaPredicted RBP39.55■■■■□ 3.92
LINC00543-201ENST00000567234 SMARCA4P51532 1647 aa39.5■■■■□ 3.91
LINC00543-201ENST00000567234 CHIC1Q5VXU3 224 aa39.44■■■■□ 3.9
LINC00543-201ENST00000567234 WIZO95785 1651 aa39.32■■■■□ 3.89
LINC00543-201ENST00000567234 EIF4G1Q04637 1599 aaKnown RBP39.24■■■■□ 3.87
LINC00543-201ENST00000567234 PEG3Q9GZU2 1588 aa38.98■■■■□ 3.83
LINC00543-201ENST00000567234 TOP2AP11388 1531 aaKnown RBP38.95■■■■□ 3.83
LINC00543-201ENST00000567234 ATAD2BQ9ULI0 1458 aa38.93■■■■□ 3.82
LINC00543-201ENST00000567234 SMARCA2P51531 1590 aa38.85■■■■□ 3.81
LINC00543-201ENST00000567234 CC2D2AQ9P2K1 1620 aa38.8■■■■□ 3.8
LINC00543-201ENST00000567234 BAZ1BQ9UIG0 1483 aaKnown RBP38.67■■■■□ 3.78
LINC00543-201ENST00000567234 NCAPD3P42695 1498 aa38.63■■■■□ 3.77
LINC00543-201ENST00000567234 HMGXB3Q12766 1538 aa38.55■■■■□ 3.76
LINC00543-201ENST00000567234 CCDC88BA6NC98 1476 aa38.54■■■■□ 3.76
LINC00543-201ENST00000567234 TRIM41Q8WV44 630 aa38.39■■■■□ 3.74
LINC00543-201ENST00000567234 DNAJC5BQ9UF47 199 aa38.28■■■■□ 3.72
LINC00543-201ENST00000567234 LOC105371045A0A1W2PR82 267 aa37.9■■■■□ 3.66
LINC00543-201ENST00000567234 ABCC8Q09428 1581 aa37.88■■■■□ 3.65
LINC00543-201ENST00000567234 CFTRP13569 1480 aa37.67■■■■□ 3.62
LINC00543-201ENST00000567234 FAM9AQ8IZU1 332 aaPredicted RBP37.62■■■■□ 3.61
LINC00543-201ENST00000567234 WRNQ14191 1432 aaPredicted RBP eCLIP37.61■■■■□ 3.61
LINC00543-201ENST00000567234 CADPSQ9ULU8 1353 aa37.61■■■■□ 3.61
LINC00543-201ENST00000567234 NESP48681 1621 aa37.56■■■■□ 3.6
LINC00543-201ENST00000567234 PRDM2Q13029 1718 aa37.51■■■■□ 3.6
LINC00543-201ENST00000567234 EEA1Q15075 1411 aa37.44■■■■□ 3.58
LINC00543-201ENST00000567234 SYNJ1O43426 1573 aa37.42■■■■□ 3.58
LINC00543-201ENST00000567234 LAMC3Q9Y6N6 1575 aa37.4■■■■□ 3.58
LINC00543-201ENST00000567234 SOGA1O94964 1423 aa37.29■■■■□ 3.56
LINC00543-201ENST00000567234 TOP2BQ02880 1626 aa37.27■■■■□ 3.56
LINC00543-201ENST00000567234 BIVM-ERCC5R4GMW8 1640 aa37.24■■■■□ 3.55
LINC00543-201ENST00000567234 FANCD2Q9BXW9 1451 aa37.23■■■■□ 3.55
LINC00543-201ENST00000567234 CSRNP3Q8WYN3 585 aa37.12■■■■□ 3.53
LINC00543-201ENST00000567234 KIF21AQ7Z4S6 1674 aa37.11■■■■□ 3.53
LINC00543-201ENST00000567234 RUSC2Q8N2Y8 1516 aa37.11■■■■□ 3.53
LINC00543-201ENST00000567234 PDS5BQ9NTI5 1447 aa37.08■■■■□ 3.53
LINC00543-201ENST00000567234 CUX1P39880 1505 aa37.06■■■■□ 3.52
LINC00543-201ENST00000567234 CEP164Q9UPV0 1460 aa37.03■■■■□ 3.52
LINC00543-201ENST00000567234 HRCP23327 699 aa37.01■■■■□ 3.52
LINC00543-201ENST00000567234 EHMT2Q96KQ7 1210 aa37.01■■■■□ 3.52
LINC00543-201ENST00000567234 TNIKQ9UKE5 1360 aa36.91■■■■□ 3.5
LINC00543-201ENST00000567234 KIF21BO75037 1637 aa36.91■■■■□ 3.5
LINC00543-201ENST00000567234 GOLGA3Q08378 1498 aa36.9■■■■□ 3.5
LINC00543-201ENST00000567234 URB2Q14146 1524 aaKnown RBP36.84■■■■□ 3.49
LINC00543-201ENST00000567234 DNMBPQ6XZF7 1577 aa36.81■■■■□ 3.48
LINC00543-201ENST00000567234 TOPBP1Q92547 1522 aa36.8■■■■□ 3.48
LINC00543-201ENST00000567234 PCGF6Q9BYE7 350 aa36.78■■■■□ 3.48
LINC00543-201ENST00000567234 ERCC6Q03468 1493 aa36.77■■■■□ 3.48
LINC00543-201ENST00000567234 CEP162Q5TB80 1403 aa36.72■■■■□ 3.47
LINC00543-201ENST00000567234 TRIM26Q12899 539 aaPredicted RBP36.71■■■■□ 3.47
LINC00543-201ENST00000567234 FGD5Q6ZNL6 1462 aa36.71■■■■□ 3.47
LINC00543-201ENST00000567234 MRC2Q9UBG0 1479 aa36.69■■■■□ 3.46
LINC00543-201ENST00000567234 UBTFP17480 764 aaKnown RBP36.66■■■■□ 3.46
LINC00543-201ENST00000567234 KIF27Q86VH2 1401 aa36.62■■■■□ 3.45
LINC00543-201ENST00000567234 POLA1P09884 1462 aaPredicted RBP36.6■■■■□ 3.45
LINC00543-201ENST00000567234 THOC2Q8NI27 1593 aaKnown RBP36.58■■■■□ 3.45
LINC00543-201ENST00000567234 ERICH3Q5RHP9 1530 aa36.56■■■■□ 3.44
LINC00543-201ENST00000567234 PRXQ9BXM0 1461 aa36.53■■■■□ 3.44
LINC00543-201ENST00000567234 WDR62O43379 1518 aa36.53■■■■□ 3.44
LINC00543-201ENST00000567234 RAPGEF2Q9Y4G8 1499 aa36.52■■■■□ 3.44
LINC00543-201ENST00000567234 RAD54L2Q9Y4B4 1467 aa36.51■■■■□ 3.43
LINC00543-201ENST00000567234 CUX2O14529 1486 aa36.37■■■■□ 3.41
LINC00543-201ENST00000567234 WDR97A6NE52 1622 aa36.33■■■■□ 3.41
LINC00543-201ENST00000567234 ABCA10Q8WWZ4 1543 aa36.32■■■■□ 3.4
LINC00543-201ENST00000567234 CLIP1P30622 1438 aa36.31■■■■□ 3.4
LINC00543-201ENST00000567234 TARBP1Q13395 1621 aaKnown RBP36.31■■■■□ 3.4
LINC00543-201ENST00000567234 IGF1RP08069 1367 aa36.23■■■■□ 3.39
LINC00543-201ENST00000567234 TDRD9Q8NDG6 1382 aaKnown RBP36.17■■■■□ 3.38
LINC00543-201ENST00000567234 IFT140Q96RY7 1462 aa36.14■■■■□ 3.38
LINC00543-201ENST00000567234 ABCA5Q8WWZ7 1642 aa36.12■■■■□ 3.37
LINC00543-201ENST00000567234 VPS8Q8N3P4 1428 aa36.09■■■■□ 3.37
LINC00543-201ENST00000567234 ZNF608Q9ULD9 1512 aaPredicted RBP36.07■■■■□ 3.37
LINC00543-201ENST00000567234 CARMIL1Q5VZK9 1371 aa36.05■■■■□ 3.36
LINC00543-201ENST00000567234 GAPVD1Q14C86 1478 aa36.03■■■■□ 3.36
LINC00543-201ENST00000567234 AQRO60306 1485 aaKnown RBP eCLIP36.02■■■■□ 3.36
LINC00543-201ENST00000567234 PPARGC1BQ86YN6 1023 aaKnown RBP36.01■■■■□ 3.35
LINC00543-201ENST00000567234 CUL7Q14999 1698 aa35.95■■■■□ 3.35
LINC00543-201ENST00000567234 PELP1Q8IZL8 1130 aaKnown RBP35.94■■■■□ 3.34
LINC00543-201ENST00000567234 PBRM1Q86U86 1689 aa35.93■■■■□ 3.34
LINC00543-201ENST00000567234 EIF4G3O43432 1585 aaKnown RBP35.93■■■■□ 3.34
LINC00543-201ENST00000567234 ARAP1Q96P48 1450 aa35.88■■■■□ 3.33
LINC00543-201ENST00000567234 RANGAP1P46060 587 aaPredicted RBP35.79■■■■□ 3.32
LINC00543-201ENST00000567234 GRIN2BQ13224 1484 aa35.79■■■■□ 3.32
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms