RNA–Protein interactions for RNA: ENST00000552495.1

RITA1-203, Transcript of RBPJ interacting and tubulin associated 1, humanhuman

TSL 2 BASIC

Gene RITA1, Length 1,898 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RITA1-203ENST00000552495 NISCHQ9Y2I1 1504 aa51.5■■■■■ 5.84
RITA1-203ENST00000552495 CCDC180Q9P1Z9 1646 aa44.62■■■■■ 4.73
RITA1-203ENST00000552495 ZCCHC6Q5VYS8 1495 aaKnown RBP43.36■■■■■ 4.53
RITA1-203ENST00000552495 DCAF1Q9Y4B6 1507 aa42.58■■■■■ 4.41
RITA1-203ENST00000552495 DCAF8L2P0C7V8 631 aa42.47■■■■■ 4.39
RITA1-203ENST00000552495 SHROOM4Q9ULL8 1493 aa42.44■■■■■ 4.39
RITA1-203ENST00000552495 MYO15BQ96JP2 1530 aa41.87■■■■■ 4.29
RITA1-203ENST00000552495 ABCC9O60706 1549 aa41.77■■■■■ 4.28
RITA1-203ENST00000552495 NACADO15069 1562 aa41.47■■■■■ 4.23
RITA1-203ENST00000552495 SUPT5HO00267 1087 aaKnown RBP41.15■■■■■ 4.18
RITA1-203ENST00000552495 SCRIBQ14160 1630 aa41.15■■■■■ 4.18
RITA1-203ENST00000552495 RB1CC1Q8TDY2 1594 aa40.99■■■■■ 4.15
RITA1-203ENST00000552495 RSF1Q96T23 1441 aaPredicted RBP40.17■■■■■ 4.02
RITA1-203ENST00000552495 UNC13AQ9UPW8 1703 aa40.14■■■■■ 4.02
RITA1-203ENST00000552495 CECR2Q9BXF3 1484 aa39.98■■■■□ 3.99
RITA1-203ENST00000552495 MROH2BQ7Z745 1585 aa39.8■■■■□ 3.96
RITA1-203ENST00000552495 BAZ1AQ9NRL2 1556 aaPredicted RBP39.73■■■■□ 3.95
RITA1-203ENST00000552495 BICRAQ9NZM4 1560 aa39.71■■■■□ 3.95
RITA1-203ENST00000552495 CHIC1Q5VXU3 224 aa39.64■■■■□ 3.94
RITA1-203ENST00000552495 PABPN1Q86U42 306 aaKnown RBP eCLIP39.54■■■■□ 3.92
RITA1-203ENST00000552495 WIZO95785 1651 aa39.51■■■■□ 3.92
RITA1-203ENST00000552495 SMARCA4P51532 1647 aa39.47■■■■□ 3.91
RITA1-203ENST00000552495 TOP2AP11388 1531 aaKnown RBP39.11■■■■□ 3.85
RITA1-203ENST00000552495 PEG3Q9GZU2 1588 aa38.95■■■■□ 3.83
RITA1-203ENST00000552495 SMARCA2P51531 1590 aa38.76■■■■□ 3.8
RITA1-203ENST00000552495 CCDC88BA6NC98 1476 aa38.75■■■■□ 3.79
RITA1-203ENST00000552495 ATAD2BQ9ULI0 1458 aa38.7■■■■□ 3.79
RITA1-203ENST00000552495 TRIM41Q8WV44 630 aa38.66■■■■□ 3.78
RITA1-203ENST00000552495 EIF4G1Q04637 1599 aaKnown RBP38.62■■■■□ 3.77
RITA1-203ENST00000552495 BAZ1BQ9UIG0 1483 aaKnown RBP38.53■■■■□ 3.76
RITA1-203ENST00000552495 NCAPD3P42695 1498 aa38.28■■■■□ 3.72
RITA1-203ENST00000552495 HMGXB3Q12766 1538 aa38.26■■■■□ 3.71
RITA1-203ENST00000552495 LOC105371045A0A1W2PR82 267 aa38.15■■■■□ 3.7
RITA1-203ENST00000552495 ABCC8Q09428 1581 aa38.1■■■■□ 3.69
RITA1-203ENST00000552495 FAM9AQ8IZU1 332 aaPredicted RBP37.95■■■■□ 3.67
RITA1-203ENST00000552495 WRNQ14191 1432 aaPredicted RBP eCLIP37.82■■■■□ 3.64
RITA1-203ENST00000552495 CC2D2AQ9P2K1 1620 aa37.8■■■■□ 3.64
RITA1-203ENST00000552495 SYNJ1O43426 1573 aa37.6■■■■□ 3.61
RITA1-203ENST00000552495 CFTRP13569 1480 aa37.58■■■■□ 3.61
RITA1-203ENST00000552495 EEA1Q15075 1411 aa37.58■■■■□ 3.61
RITA1-203ENST00000552495 SOGA1O94964 1423 aa37.52■■■■□ 3.6
RITA1-203ENST00000552495 TOP2BQ02880 1626 aa37.42■■■■□ 3.58
RITA1-203ENST00000552495 EHMT2Q96KQ7 1210 aa37.41■■■■□ 3.58
RITA1-203ENST00000552495 PRDM2Q13029 1718 aa37.38■■■■□ 3.57
RITA1-203ENST00000552495 CADPSQ9ULU8 1353 aa37.36■■■■□ 3.57
RITA1-203ENST00000552495 BIVM-ERCC5R4GMW8 1640 aa37.35■■■■□ 3.57
RITA1-203ENST00000552495 CSRNP3Q8WYN3 585 aa37.34■■■■□ 3.57
RITA1-203ENST00000552495 RUSC2Q8N2Y8 1516 aa37.32■■■■□ 3.57
RITA1-203ENST00000552495 CUX1P39880 1505 aa37.19■■■■□ 3.54
RITA1-203ENST00000552495 GOLGA3Q08378 1498 aa37.08■■■■□ 3.53
RITA1-203ENST00000552495 TNIKQ9UKE5 1360 aa37.07■■■■□ 3.52
RITA1-203ENST00000552495 CEP164Q9UPV0 1460 aa37.03■■■■□ 3.52
RITA1-203ENST00000552495 KIF21BO75037 1637 aa37.02■■■■□ 3.52
RITA1-203ENST00000552495 PCGF6Q9BYE7 350 aa37.01■■■■□ 3.52
RITA1-203ENST00000552495 UBTFP17480 764 aaKnown RBP36.94■■■■□ 3.5
RITA1-203ENST00000552495 FANCD2Q9BXW9 1451 aa36.94■■■■□ 3.5
RITA1-203ENST00000552495 CEP162Q5TB80 1403 aa36.91■■■■□ 3.5
RITA1-203ENST00000552495 TRIM26Q12899 539 aaPredicted RBP36.88■■■■□ 3.49
RITA1-203ENST00000552495 LAMC3Q9Y6N6 1575 aa36.88■■■■□ 3.49
RITA1-203ENST00000552495 KIF27Q86VH2 1401 aa36.83■■■■□ 3.49
RITA1-203ENST00000552495 NESP48681 1621 aa36.82■■■■□ 3.49
RITA1-203ENST00000552495 RAPGEF2Q9Y4G8 1499 aa36.73■■■■□ 3.47
RITA1-203ENST00000552495 FGD5Q6ZNL6 1462 aa36.71■■■■□ 3.47
RITA1-203ENST00000552495 DNMBPQ6XZF7 1577 aa36.69■■■■□ 3.46
RITA1-203ENST00000552495 ERICH3Q5RHP9 1530 aa36.69■■■■□ 3.46
RITA1-203ENST00000552495 PRXQ9BXM0 1461 aa36.68■■■■□ 3.46
RITA1-203ENST00000552495 DNAJC5BQ9UF47 199 aa36.67■■■■□ 3.46
RITA1-203ENST00000552495 PDS5BQ9NTI5 1447 aa36.63■■■■□ 3.45
RITA1-203ENST00000552495 CUX2O14529 1486 aa36.6■■■■□ 3.45
RITA1-203ENST00000552495 TOPBP1Q92547 1522 aa36.59■■■■□ 3.45
RITA1-203ENST00000552495 CLIP1P30622 1438 aa36.51■■■■□ 3.43
RITA1-203ENST00000552495 POLA1P09884 1462 aaPredicted RBP36.46■■■■□ 3.43
RITA1-203ENST00000552495 IGF1RP08069 1367 aa36.43■■■■□ 3.42
RITA1-203ENST00000552495 URB2Q14146 1524 aaKnown RBP36.43■■■■□ 3.42
RITA1-203ENST00000552495 ABCA10Q8WWZ4 1543 aa36.4■■■■□ 3.42
RITA1-203ENST00000552495 HRCP23327 699 aa36.37■■■■□ 3.41
RITA1-203ENST00000552495 KIF21AQ7Z4S6 1674 aa36.36■■■■□ 3.41
RITA1-203ENST00000552495 RAD54L2Q9Y4B4 1467 aa36.34■■■■□ 3.41
RITA1-203ENST00000552495 PPARGC1BQ86YN6 1023 aaKnown RBP36.33■■■■□ 3.41
RITA1-203ENST00000552495 CARMIL1Q5VZK9 1371 aa36.27■■■■□ 3.4
RITA1-203ENST00000552495 VPS8Q8N3P4 1428 aa36.26■■■■□ 3.39
RITA1-203ENST00000552495 WDR97A6NE52 1622 aa36.18■■■■□ 3.38
RITA1-203ENST00000552495 RANGAP1P46060 587 aaPredicted RBP36.17■■■■□ 3.38
RITA1-203ENST00000552495 MRC2Q9UBG0 1479 aa36.09■■■■□ 3.37
RITA1-203ENST00000552495 CUL7Q14999 1698 aa36.09■■■■□ 3.37
RITA1-203ENST00000552495 ARAP1Q96P48 1450 aa36.04■■■■□ 3.36
RITA1-203ENST00000552495 ABCA5Q8WWZ7 1642 aa36.04■■■■□ 3.36
RITA1-203ENST00000552495 APLP2Q06481 763 aa36.01■■■■□ 3.35
RITA1-203ENST00000552495 TARBP1Q13395 1621 aaKnown RBP35.98■■■■□ 3.35
RITA1-203ENST00000552495 GAPVD1Q14C86 1478 aa35.97■■■■□ 3.35
RITA1-203ENST00000552495 TDRD9Q8NDG6 1382 aaKnown RBP35.97■■■■□ 3.35
RITA1-203ENST00000552495 ARHGAP35Q9NRY4 1499 aa35.94■■■■□ 3.34
RITA1-203ENST00000552495 TTBK1Q5TCY1 1321 aaPredicted RBP35.94■■■■□ 3.34
RITA1-203ENST00000552495 WDR62O43379 1518 aa35.86■■■■□ 3.33
RITA1-203ENST00000552495 ERCC6Q03468 1493 aa35.79■■■■□ 3.32
RITA1-203ENST00000552495 IFT140Q96RY7 1462 aa35.75■■■■□ 3.31
RITA1-203ENST00000552495 CTTNBP2Q8WZ74 1663 aa35.75■■■■□ 3.31
RITA1-203ENST00000552495 ZEB1P37275 1124 aaPredicted RBP35.73■■■■□ 3.31
RITA1-203ENST00000552495 PBRM1Q86U86 1689 aa35.69■■■■□ 3.3
RITA1-203ENST00000552495 EFCAB5A4FU69 1503 aa35.66■■■■□ 3.3
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms