RNA–Protein interactions for RNA: ENST00000232888.6

RRP9-201, Transcript of ribosomal RNA processing 9, U3 small nucleolar RNA binding protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RRP9, Length 1,578 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RRP9-201ENST00000232888 NISCHQ9Y2I1 1504 aa53.86■■■■■ 6.21
RRP9-201ENST00000232888 CCDC180Q9P1Z9 1646 aa47■■■■■ 5.11
RRP9-201ENST00000232888 ZCCHC6Q5VYS8 1495 aaKnown RBP45.25■■■■■ 4.83
RRP9-201ENST00000232888 DCAF1Q9Y4B6 1507 aa44.67■■■■■ 4.74
RRP9-201ENST00000232888 DCAF8L2P0C7V8 631 aa44.32■■■■■ 4.69
RRP9-201ENST00000232888 ABCC9O60706 1549 aa44.27■■■■■ 4.68
RRP9-201ENST00000232888 MYO15BQ96JP2 1530 aa44.18■■■■■ 4.66
RRP9-201ENST00000232888 NACADO15069 1562 aa43.82■■■■■ 4.6
RRP9-201ENST00000232888 SHROOM4Q9ULL8 1493 aa43.72■■■■■ 4.59
RRP9-201ENST00000232888 RB1CC1Q8TDY2 1594 aa43.39■■■■■ 4.54
RRP9-201ENST00000232888 SCRIBQ14160 1630 aa43.06■■■■■ 4.48
RRP9-201ENST00000232888 UNC13AQ9UPW8 1703 aa42.34■■■■■ 4.37
RRP9-201ENST00000232888 SUPT5HO00267 1087 aaKnown RBP42.14■■■■■ 4.34
RRP9-201ENST00000232888 BICRAQ9NZM4 1560 aa41.99■■■■■ 4.31
RRP9-201ENST00000232888 RSF1Q96T23 1441 aaPredicted RBP41.77■■■■■ 4.28
RRP9-201ENST00000232888 CECR2Q9BXF3 1484 aa41.75■■■■■ 4.27
RRP9-201ENST00000232888 PABPN1Q86U42 306 aaKnown RBP eCLIP41.73■■■■■ 4.271e-6■■■■□ 25
RRP9-201ENST00000232888 BAZ1AQ9NRL2 1556 aaPredicted RBP41.62■■■■■ 4.25
RRP9-201ENST00000232888 MROH2BQ7Z745 1585 aa41.53■■■■■ 4.24
RRP9-201ENST00000232888 SMARCA4P51532 1647 aa41.37■■■■■ 4.21
RRP9-201ENST00000232888 WIZO95785 1651 aa41.15■■■■■ 4.18
RRP9-201ENST00000232888 PEG3Q9GZU2 1588 aa40.96■■■■■ 4.15
RRP9-201ENST00000232888 TOP2AP11388 1531 aaKnown RBP40.85■■■■■ 4.13
RRP9-201ENST00000232888 SMARCA2P51531 1590 aa40.75■■■■■ 4.11
RRP9-201ENST00000232888 EIF4G1Q04637 1599 aaKnown RBP40.75■■■■■ 4.11
RRP9-201ENST00000232888 ATAD2BQ9ULI0 1458 aa40.72■■■■■ 4.11
RRP9-201ENST00000232888 BAZ1BQ9UIG0 1483 aaKnown RBP40.49■■■■■ 4.07
RRP9-201ENST00000232888 CHIC1Q5VXU3 224 aa40.44■■■■■ 4.06
RRP9-201ENST00000232888 NCAPD3P42695 1498 aa40.43■■■■■ 4.06
RRP9-201ENST00000232888 CCDC88BA6NC98 1476 aa40.4■■■■■ 4.06
RRP9-201ENST00000232888 HMGXB3Q12766 1538 aa40.37■■■■■ 4.05
RRP9-201ENST00000232888 CC2D2AQ9P2K1 1620 aa40.11■■■■■ 4.01
RRP9-201ENST00000232888 TRIM41Q8WV44 630 aa39.74■■■■□ 3.95
RRP9-201ENST00000232888 CFTRP13569 1480 aa39.51■■■■□ 3.92
RRP9-201ENST00000232888 ABCC8Q09428 1581 aa39.43■■■■□ 3.9
RRP9-201ENST00000232888 CADPSQ9ULU8 1353 aa39.37■■■■□ 3.89
RRP9-201ENST00000232888 WRNQ14191 1432 aaPredicted RBP eCLIP39.33■■■■□ 3.89
RRP9-201ENST00000232888 PRDM2Q13029 1718 aa39.24■■■■□ 3.87
RRP9-201ENST00000232888 SYNJ1O43426 1573 aa39.08■■■■□ 3.85
RRP9-201ENST00000232888 LAMC3Q9Y6N6 1575 aa39.03■■■■□ 3.84
RRP9-201ENST00000232888 TOP2BQ02880 1626 aa39.01■■■■□ 3.83
RRP9-201ENST00000232888 DNAJC5BQ9UF47 199 aa38.98■■■■□ 3.83
RRP9-201ENST00000232888 BIVM-ERCC5R4GMW8 1640 aa38.96■■■■□ 3.83
RRP9-201ENST00000232888 EEA1Q15075 1411 aa38.91■■■■□ 3.82
RRP9-201ENST00000232888 FANCD2Q9BXW9 1451 aa38.89■■■■□ 3.82
RRP9-201ENST00000232888 CUX1P39880 1505 aa38.86■■■■□ 3.81
RRP9-201ENST00000232888 FAM9AQ8IZU1 332 aaPredicted RBP38.85■■■■□ 3.81
RRP9-201ENST00000232888 NESP48681 1621 aa38.85■■■■□ 3.81
RRP9-201ENST00000232888 LOC105371045A0A1W2PR82 267 aa38.78■■■■□ 3.8
RRP9-201ENST00000232888 PDS5BQ9NTI5 1447 aa38.76■■■■□ 3.8
RRP9-201ENST00000232888 SOGA1O94964 1423 aa38.75■■■■□ 3.79
RRP9-201ENST00000232888 CEP164Q9UPV0 1460 aa38.65■■■■□ 3.78
RRP9-201ENST00000232888 CSRNP3Q8WYN3 585 aa38.59■■■■□ 3.77
RRP9-201ENST00000232888 DNMBPQ6XZF7 1577 aa38.57■■■■□ 3.76
RRP9-201ENST00000232888 RUSC2Q8N2Y8 1516 aa38.56■■■■□ 3.76
RRP9-201ENST00000232888 TOPBP1Q92547 1522 aa38.46■■■■□ 3.75
RRP9-201ENST00000232888 FGD5Q6ZNL6 1462 aa38.44■■■■□ 3.74
RRP9-201ENST00000232888 KIF21AQ7Z4S6 1674 aa38.38■■■■□ 3.74
RRP9-201ENST00000232888 KIF27Q86VH2 1401 aa38.38■■■■□ 3.73
RRP9-201ENST00000232888 URB2Q14146 1524 aaKnown RBP38.36■■■■□ 3.73
RRP9-201ENST00000232888 KIF21BO75037 1637 aa38.29■■■■□ 3.72
RRP9-201ENST00000232888 POLA1P09884 1462 aaPredicted RBP38.26■■■■□ 3.72
RRP9-201ENST00000232888 GOLGA3Q08378 1498 aa38.26■■■■□ 3.71
RRP9-201ENST00000232888 MRC2Q9UBG0 1479 aa38.21■■■■□ 3.71
RRP9-201ENST00000232888 CUX2O14529 1486 aa38.2■■■■□ 3.71
RRP9-201ENST00000232888 TNIKQ9UKE5 1360 aa38.18■■■■□ 3.7
RRP9-201ENST00000232888 EHMT2Q96KQ7 1210 aa38.18■■■■□ 3.7
RRP9-201ENST00000232888 ABCA10Q8WWZ4 1543 aa38.17■■■■□ 3.7
RRP9-201ENST00000232888 PRXQ9BXM0 1461 aa38.1■■■■□ 3.69
RRP9-201ENST00000232888 RAD54L2Q9Y4B4 1467 aa38.07■■■■□ 3.69
RRP9-201ENST00000232888 ERICH3Q5RHP9 1530 aa38.07■■■■□ 3.69
RRP9-201ENST00000232888 ERCC6Q03468 1493 aa38.03■■■■□ 3.68
RRP9-201ENST00000232888 UBTFP17480 764 aaKnown RBP38.03■■■■□ 3.68
RRP9-201ENST00000232888 IGF1RP08069 1367 aa38.01■■■■□ 3.67
RRP9-201ENST00000232888 WDR62O43379 1518 aa38■■■■□ 3.67
RRP9-201ENST00000232888 RAPGEF2Q9Y4G8 1499 aa37.98■■■■□ 3.67
RRP9-201ENST00000232888 WDR97A6NE52 1622 aa37.96■■■■□ 3.67
RRP9-201ENST00000232888 CEP162Q5TB80 1403 aa37.89■■■■□ 3.66
RRP9-201ENST00000232888 TARBP1Q13395 1621 aaKnown RBP37.87■■■■□ 3.65
RRP9-201ENST00000232888 CARMIL1Q5VZK9 1371 aa37.83■■■■□ 3.65
RRP9-201ENST00000232888 THOC2Q8NI27 1593 aaKnown RBP37.82■■■■□ 3.64
RRP9-201ENST00000232888 ABCA5Q8WWZ7 1642 aa37.81■■■■□ 3.64
RRP9-201ENST00000232888 IFT140Q96RY7 1462 aa37.78■■■■□ 3.64
RRP9-201ENST00000232888 GAPVD1Q14C86 1478 aa37.76■■■■□ 3.64
RRP9-201ENST00000232888 CUL7Q14999 1698 aa37.73■■■■□ 3.63
RRP9-201ENST00000232888 TDRD9Q8NDG6 1382 aaKnown RBP37.73■■■■□ 3.63
RRP9-201ENST00000232888 CLIP1P30622 1438 aa37.62■■■■□ 3.61
RRP9-201ENST00000232888 GRIN2BQ13224 1484 aa37.49■■■■□ 3.59
RRP9-201ENST00000232888 AQRO60306 1485 aaKnown RBP eCLIP37.48■■■■□ 3.595e-6■■□□□ 14.3
RRP9-201ENST00000232888 PBRM1Q86U86 1689 aa37.46■■■■□ 3.59
RRP9-201ENST00000232888 ZNF608Q9ULD9 1512 aaPredicted RBP37.42■■■■□ 3.58
RRP9-201ENST00000232888 FHAD1B1AJZ9 1412 aa37.4■■■■□ 3.58
RRP9-201ENST00000232888 EIF4G3O43432 1585 aaKnown RBP37.32■■■■□ 3.57
RRP9-201ENST00000232888 VPS8Q8N3P4 1428 aa37.32■■■■□ 3.56
RRP9-201ENST00000232888 ADAMTS12P58397 1594 aa37.31■■■■□ 3.56
RRP9-201ENST00000232888 RANGAP1P46060 587 aaPredicted RBP37.23■■■■□ 3.55
RRP9-201ENST00000232888 CTTNBP2Q8WZ74 1663 aa37.22■■■■□ 3.55
RRP9-201ENST00000232888 ARAP1Q96P48 1450 aa37.21■■■■□ 3.55
RRP9-201ENST00000232888 ARHGAP35Q9NRY4 1499 aa37.21■■■■□ 3.55
RRP9-201ENST00000232888 MAGI1Q96QZ7 1491 aaPredicted RBP37.19■■■■□ 3.54
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms