RNA–Protein interactions for RNA: ENST00000269347.10

RAB40B-201, Transcript of RAB40B, member RAS oncogene family, humanhuman

TSL 2 BASIC

Gene RAB40B, Length 2,189 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40B-201ENST00000269347 NISCHQ9Y2I1 1504 aa51.06■■■■■ 5.77
RAB40B-201ENST00000269347 CCDC180Q9P1Z9 1646 aa43.98■■■■■ 4.63
RAB40B-201ENST00000269347 ZCCHC6Q5VYS8 1495 aaKnown RBP43.03■■■■■ 4.48
RAB40B-201ENST00000269347 SHROOM4Q9ULL8 1493 aa42.59■■■■■ 4.41
RAB40B-201ENST00000269347 DCAF8L2P0C7V8 631 aa42.27■■■■■ 4.36
RAB40B-201ENST00000269347 DCAF1Q9Y4B6 1507 aa41.95■■■■■ 4.31
RAB40B-201ENST00000269347 ABCC9O60706 1549 aa41.44■■■■■ 4.22
RAB40B-201ENST00000269347 SUPT5HO00267 1087 aaKnown RBP41.2■■■■■ 4.19
RAB40B-201ENST00000269347 MYO15BQ96JP2 1530 aa41.12■■■■■ 4.17
RAB40B-201ENST00000269347 SCRIBQ14160 1630 aa40.94■■■■■ 4.14
RAB40B-201ENST00000269347 NACADO15069 1562 aa40.81■■■■■ 4.12
RAB40B-201ENST00000269347 RB1CC1Q8TDY2 1594 aa40.34■■■■■ 4.05
RAB40B-201ENST00000269347 RSF1Q96T23 1441 aaPredicted RBP39.98■■■■□ 3.99
RAB40B-201ENST00000269347 UNC13AQ9UPW8 1703 aa39.93■■■■□ 3.98
RAB40B-201ENST00000269347 CECR2Q9BXF3 1484 aa39.91■■■■□ 3.98
RAB40B-201ENST00000269347 CHIC1Q5VXU3 224 aa39.7■■■■□ 3.95
RAB40B-201ENST00000269347 MROH2BQ7Z745 1585 aa39.67■■■■□ 3.94
RAB40B-201ENST00000269347 BICRAQ9NZM4 1560 aa39.43■■■■□ 3.9
RAB40B-201ENST00000269347 WIZO95785 1651 aa39.42■■■■□ 3.9
RAB40B-201ENST00000269347 PABPN1Q86U42 306 aaKnown RBP eCLIP39.35■■■■□ 3.89
RAB40B-201ENST00000269347 BAZ1AQ9NRL2 1556 aaPredicted RBP39.25■■■■□ 3.87
RAB40B-201ENST00000269347 SMARCA4P51532 1647 aa39.13■■■■□ 3.85
RAB40B-201ENST00000269347 TOP2AP11388 1531 aaKnown RBP38.75■■■■□ 3.79
RAB40B-201ENST00000269347 EIF4G1Q04637 1599 aaKnown RBP38.56■■■■□ 3.76
RAB40B-201ENST00000269347 SMARCA2P51531 1590 aa38.55■■■■□ 3.76
RAB40B-201ENST00000269347 CCDC88BA6NC98 1476 aa38.54■■■■□ 3.76
RAB40B-201ENST00000269347 PEG3Q9GZU2 1588 aa38.49■■■■□ 3.75
RAB40B-201ENST00000269347 TRIM41Q8WV44 630 aa38.45■■■■□ 3.75
RAB40B-201ENST00000269347 LOC105371045A0A1W2PR82 267 aa38.44■■■■□ 3.74
RAB40B-201ENST00000269347 ATAD2BQ9ULI0 1458 aa38.33■■■■□ 3.73
RAB40B-201ENST00000269347 ABCC8Q09428 1581 aa38.12■■■■□ 3.69
RAB40B-201ENST00000269347 BAZ1BQ9UIG0 1483 aaKnown RBP38.1■■■■□ 3.69
RAB40B-201ENST00000269347 FAM9AQ8IZU1 332 aaPredicted RBP38.09■■■■□ 3.69
RAB40B-201ENST00000269347 NCAPD3P42695 1498 aa37.77■■■■□ 3.64
RAB40B-201ENST00000269347 EHMT2Q96KQ7 1210 aa37.75■■■■□ 3.63
RAB40B-201ENST00000269347 HMGXB3Q12766 1538 aa37.71■■■■□ 3.63
RAB40B-201ENST00000269347 SOGA1O94964 1423 aa37.52■■■■□ 3.6
RAB40B-201ENST00000269347 WRNQ14191 1432 aaPredicted RBP eCLIP37.52■■■■□ 3.6
RAB40B-201ENST00000269347 SYNJ1O43426 1573 aa37.51■■■■□ 3.6
RAB40B-201ENST00000269347 RUSC2Q8N2Y8 1516 aa37.45■■■■□ 3.59
RAB40B-201ENST00000269347 CC2D2AQ9P2K1 1620 aa37.41■■■■□ 3.58
RAB40B-201ENST00000269347 PCGF6Q9BYE7 350 aa37.27■■■■□ 3.56
RAB40B-201ENST00000269347 CFTRP13569 1480 aa37.18■■■■□ 3.54
RAB40B-201ENST00000269347 TOP2BQ02880 1626 aa37.11■■■■□ 3.53
RAB40B-201ENST00000269347 CSRNP3Q8WYN3 585 aa37.08■■■■□ 3.53
RAB40B-201ENST00000269347 EEA1Q15075 1411 aa37.05■■■■□ 3.52
RAB40B-201ENST00000269347 BIVM-ERCC5R4GMW8 1640 aa37.04■■■■□ 3.52
RAB40B-201ENST00000269347 CUX1P39880 1505 aa37■■■■□ 3.51
RAB40B-201ENST00000269347 PRDM2Q13029 1718 aa36.95■■■■□ 3.51
RAB40B-201ENST00000269347 CADPSQ9ULU8 1353 aa36.9■■■■□ 3.5
RAB40B-201ENST00000269347 TNIKQ9UKE5 1360 aa36.81■■■■□ 3.48
RAB40B-201ENST00000269347 TRIM26Q12899 539 aaPredicted RBP36.8■■■■□ 3.48
RAB40B-201ENST00000269347 CEP162Q5TB80 1403 aa36.79■■■■□ 3.48
RAB40B-201ENST00000269347 DNAJC5BQ9UF47 199 aa36.79■■■■□ 3.48
RAB40B-201ENST00000269347 GOLGA3Q08378 1498 aa36.78■■■■□ 3.48
RAB40B-201ENST00000269347 KIF21BO75037 1637 aa36.74■■■■□ 3.47
RAB40B-201ENST00000269347 UBTFP17480 764 aaKnown RBP36.73■■■■□ 3.47
RAB40B-201ENST00000269347 PPARGC1BQ86YN6 1023 aaKnown RBP36.71■■■■□ 3.47
RAB40B-201ENST00000269347 NESP48681 1621 aa36.69■■■■□ 3.46
RAB40B-201ENST00000269347 CEP164Q9UPV0 1460 aa36.68■■■■□ 3.46
RAB40B-201ENST00000269347 RAPGEF2Q9Y4G8 1499 aa36.65■■■■□ 3.46
RAB40B-201ENST00000269347 HRCP23327 699 aa36.59■■■■□ 3.45
RAB40B-201ENST00000269347 FANCD2Q9BXW9 1451 aa36.55■■■■□ 3.44
RAB40B-201ENST00000269347 PRXQ9BXM0 1461 aa36.44■■■■□ 3.42
RAB40B-201ENST00000269347 FGD5Q6ZNL6 1462 aa36.44■■■■□ 3.42
RAB40B-201ENST00000269347 KIF27Q86VH2 1401 aa36.4■■■■□ 3.42
RAB40B-201ENST00000269347 CUX2O14529 1486 aa36.32■■■■□ 3.4
RAB40B-201ENST00000269347 LAMC3Q9Y6N6 1575 aa36.31■■■■□ 3.4
RAB40B-201ENST00000269347 ERICH3Q5RHP9 1530 aa36.3■■■■□ 3.4
RAB40B-201ENST00000269347 CLIP1P30622 1438 aa36.3■■■■□ 3.4
RAB40B-201ENST00000269347 RANGAP1P46060 587 aaPredicted RBP36.27■■■■□ 3.4
RAB40B-201ENST00000269347 DNMBPQ6XZF7 1577 aa36.26■■■■□ 3.4
RAB40B-201ENST00000269347 TTBK1Q5TCY1 1321 aaPredicted RBP36.25■■■■□ 3.39
RAB40B-201ENST00000269347 TOPBP1Q92547 1522 aa36.25■■■■□ 3.39
RAB40B-201ENST00000269347 RAD54L2Q9Y4B4 1467 aa36.21■■■■□ 3.39
RAB40B-201ENST00000269347 IGF1RP08069 1367 aa36.19■■■■□ 3.38
RAB40B-201ENST00000269347 URB2Q14146 1524 aaKnown RBP36.17■■■■□ 3.38
RAB40B-201ENST00000269347 POLA1P09884 1462 aaPredicted RBP36.16■■■■□ 3.38
RAB40B-201ENST00000269347 KIF21AQ7Z4S6 1674 aa36.13■■■■□ 3.37
RAB40B-201ENST00000269347 VPS8Q8N3P4 1428 aa36.04■■■■□ 3.36
RAB40B-201ENST00000269347 ABCA10Q8WWZ4 1543 aa36.01■■■■□ 3.35
RAB40B-201ENST00000269347 PDS5BQ9NTI5 1447 aa36■■■■□ 3.35
RAB40B-201ENST00000269347 ARAP1Q96P48 1450 aa35.98■■■■□ 3.35
RAB40B-201ENST00000269347 CARMIL1Q5VZK9 1371 aa35.95■■■■□ 3.35
RAB40B-201ENST00000269347 WDR97A6NE52 1622 aa35.91■■■■□ 3.34
RAB40B-201ENST00000269347 ARHGAP35Q9NRY4 1499 aa35.83■■■■□ 3.33
RAB40B-201ENST00000269347 TDRD9Q8NDG6 1382 aaKnown RBP35.76■■■■□ 3.32
RAB40B-201ENST00000269347 ABCA5Q8WWZ7 1642 aa35.72■■■■□ 3.31
RAB40B-201ENST00000269347 TARBP1Q13395 1621 aaKnown RBP35.68■■■■□ 3.3
RAB40B-201ENST00000269347 CUL7Q14999 1698 aa35.63■■■■□ 3.29
RAB40B-201ENST00000269347 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP35.61■■■■□ 3.29
RAB40B-201ENST00000269347 GAPVD1Q14C86 1478 aa35.59■■■■□ 3.29
RAB40B-201ENST00000269347 MRC2Q9UBG0 1479 aa35.58■■■■□ 3.29
RAB40B-201ENST00000269347 KANK4Q5T7N3 995 aaPredicted RBP35.57■■■■□ 3.28
RAB40B-201ENST00000269347 APLP2Q06481 763 aa35.54■■■■□ 3.28
RAB40B-201ENST00000269347 CTTNBP2Q8WZ74 1663 aa35.46■■■■□ 3.27
RAB40B-201ENST00000269347 P3H3Q8IVL6 736 aa35.44■■■■□ 3.26
RAB40B-201ENST00000269347 AQRO60306 1485 aaKnown RBP eCLIP35.43■■■■□ 3.26
RAB40B-201ENST00000269347 WDR62O43379 1518 aa35.39■■■■□ 3.26
RAB40B-201ENST00000269347 ZEB1P37275 1124 aaPredicted RBP35.39■■■■□ 3.26
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms