Protein–RNA interactions for Protein: Q9NRR4

DROSHA, Ribonuclease 3, humanhuman

Known RBP eCLIP

Length 1,374 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DROSHAQ9NRR4 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC40.23■■■■■ 4.036e-6■□□□□ 9.1
DROSHAQ9NRR4 ECI1-204ENST00000563029 776 ntTSL 240.22■■■■■ 4.036e-6■□□□□ 9.1
DROSHAQ9NRR4 RHOT2-225ENST00000570092 674 ntTSL 338.06■■■■□ 3.686e-6■□□□□ 9.1
DROSHAQ9NRR4 RHOT2-204ENST00000561983 1044 ntTSL 537.58■■■■□ 3.616e-6■□□□□ 9.1
DROSHAQ9NRR4 RHOT2-209ENST00000563134 736 ntTSL 236.76■■■■□ 3.476e-6■□□□□ 9.1
DROSHAQ9NRR4 RHOT2-207ENST00000562708 672 ntTSL 536.37■■■■□ 3.416e-6■□□□□ 9.1
DROSHAQ9NRR4 RHOT2-214ENST00000566214 683 ntTSL 536.37■■■■□ 3.416e-6■□□□□ 9.1
DROSHAQ9NRR4 RHOT2-216ENST00000567017 1094 ntTSL 535.65■■■■□ 3.36e-6■□□□□ 9.1
DROSHAQ9NRR4 RHOT2-219ENST00000568950 1343 ntTSL 534.5■■■■□ 3.116e-6■□□□□ 9.1
DROSHAQ9NRR4 ECI1-206ENST00000566379 961 ntTSL 233.62■■■□□ 2.976e-6■□□□□ 9.1
DROSHAQ9NRR4 RHOT2-226ENST00000570280 708 ntTSL 332.9■■■□□ 2.866e-6■□□□□ 9.1
DROSHAQ9NRR4 PDXDC1-207ENST00000562119 884 ntTSL 532.58■■■□□ 2.816e-6■□□□□ 9.1
DROSHAQ9NRR4 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC31.55■■■□□ 2.646e-6■□□□□ 9.1
DROSHAQ9NRR4 RHOT2-210ENST00000563637 993 ntTSL 531.03■■■□□ 2.566e-6■□□□□ 9.1
DROSHAQ9NRR4 RHOT2-205ENST00000562333 1052 ntTSL 530.09■■■□□ 2.416e-6■□□□□ 9.1
DROSHAQ9NRR4 RHOT2-211ENST00000563776 923 ntTSL 328.51■■■□□ 2.166e-6■□□□□ 9.1
DROSHAQ9NRR4 MFGE8-214ENST00000560937 801 ntTSL 227.63■■■□□ 2.016e-6■□□□□ 9.1
DROSHAQ9NRR4 RHOT2-215ENST00000566965 879 ntTSL 527.48■■□□□ 1.996e-6■□□□□ 9.1
DROSHAQ9NRR4 KDM5C-207ENST00000429877 870 ntTSL 326.55■■□□□ 1.846e-6■□□□□ 9.1
DROSHAQ9NRR4 RHOT2-206ENST00000562598 612 ntTSL 326.39■■□□□ 1.826e-6■□□□□ 9.1
DROSHAQ9NRR4 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC24.83■■□□□ 1.576e-6■□□□□ 9.1
DROSHAQ9NRR4 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC24.22■■□□□ 1.476e-6■□□□□ 9.1
DROSHAQ9NRR4 RHOT2-224ENST00000569943 635 ntTSL 323.76■■□□□ 1.396e-6■□□□□ 9.1
DROSHAQ9NRR4 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC23.22■■□□□ 1.316e-6■□□□□ 9.1
DROSHAQ9NRR4 KDM5C-206ENST00000428012 766 ntTSL 322.87■■□□□ 1.256e-6■□□□□ 9.1
DROSHAQ9NRR4 SCART1-201ENST00000462252 3451 ntTSL 222.12■■□□□ 1.136e-6■□□□□ 9.1
DROSHAQ9NRR4 FBRS-204ENST00000482749 725 ntTSL 521.36■■□□□ 1.016e-6■□□□□ 9.1
DROSHAQ9NRR4 RHOT2-203ENST00000561929 625 ntTSL 220.75■□□□□ 0.916e-6■□□□□ 9.1
DROSHAQ9NRR4 PDXDC1-218ENST00000627450 2683 ntTSL 2 BASIC20.28■□□□□ 0.846e-6■□□□□ 9.1
DROSHAQ9NRR4 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC20.14■□□□□ 0.826e-6■□□□□ 9.1
DROSHAQ9NRR4 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.766e-6■□□□□ 9.1
DROSHAQ9NRR4 PDXDC1-212ENST00000565986 561 ntTSL 219.71■□□□□ 0.756e-6■□□□□ 9.1
DROSHAQ9NRR4 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.696e-6■□□□□ 9.1
DROSHAQ9NRR4 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.666e-6■□□□□ 9.1
DROSHAQ9NRR4 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.416e-6■□□□□ 9.1
DROSHAQ9NRR4 CCNY-203ENST00000374704 3960 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.366e-6■□□□□ 9.1
DROSHAQ9NRR4 SEC14L1-205ENST00000443798 2908 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.246e-6■□□□□ 9.1
DROSHAQ9NRR4 PDXDC1-216ENST00000569715 3775 ntTSL 1 (best) BASIC16.45■□□□□ 0.226e-6■□□□□ 9.1
DROSHAQ9NRR4 PDXDC1-202ENST00000396410 4521 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.216e-6■□□□□ 9.1
DROSHAQ9NRR4 PDXDC1-217ENST00000570001 4828 ntTSL 216.29■□□□□ 0.26e-6■□□□□ 9.1
DROSHAQ9NRR4 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.196e-6■□□□□ 9.1
DROSHAQ9NRR4 KDM5C-208ENST00000452825 6096 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.146e-6■□□□□ 9.1
DROSHAQ9NRR4 SEC14L1-202ENST00000430767 5283 ntAPPRIS P3 TSL 2 BASIC15.4■□□□□ 0.066e-6■□□□□ 9.1
DROSHAQ9NRR4 PDXDC1-210ENST00000563679 2963 ntTSL 2 BASIC14.78□□□□□ -0.046e-6■□□□□ 9.1
DROSHAQ9NRR4 SEC14L1-201ENST00000392476 2957 ntAPPRIS ALT1 TSL 2 BASIC14.74□□□□□ -0.056e-6■□□□□ 9.1
DROSHAQ9NRR4 SEC14L1-204ENST00000436233 5295 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.086e-6■□□□□ 9.1
DROSHAQ9NRR4 CCNY-208ENST00000492478 809 ntTSL 513.67□□□□□ -0.226e-6■□□□□ 9.1
DROSHAQ9NRR4 RAB11FIP1-202ENST00000330843 7811 ntTSL 1 (best) BASIC13.38□□□□□ -0.276e-6■□□□□ 9.1
DROSHAQ9NRR4 KDM5C-210ENST00000467093 446 ntTSL 313.35□□□□□ -0.276e-6■□□□□ 9.1
DROSHAQ9NRR4 CCPG1-201ENST00000310958 6822 ntTSL 1 (best) BASIC12.35□□□□□ -0.436e-6■□□□□ 9.1
DROSHAQ9NRR4 TPTEP1-201ENST00000383140 971 ntTSL 1 (best)12.24□□□□□ -0.456e-6■□□□□ 9.1
DROSHAQ9NRR4 CCPG1-212ENST00000569205 2970 ntTSL 2 BASIC11.88□□□□□ -0.516e-6■□□□□ 9.1
DROSHAQ9NRR4 CCPG1-204ENST00000563171 790 ntTSL 511.38□□□□□ -0.596e-6■□□□□ 9.1
DROSHAQ9NRR4 PDXDC1-203ENST00000450288 4171 ntTSL 5 BASIC10.93□□□□□ -0.666e-6■□□□□ 9.1
DROSHAQ9NRR4 CCPG1-213ENST00000570272 570 ntTSL 410.67□□□□□ -0.76e-6■□□□□ 9.1
DROSHAQ9NRR4 MGC4859-201ENST00000634803 3118 ntTSL 1 (best) BASIC10.29□□□□□ -0.766e-6■□□□□ 9.1
DROSHAQ9NRR4 CCPG1-202ENST00000425574 1945 ntTSL 2 BASIC10.03□□□□□ -0.86e-6■□□□□ 9.1
DROSHAQ9NRR4 CCPG1-211ENST00000568808 2866 ntTSL 1 (best)9.63□□□□□ -0.876e-6■□□□□ 9.1
DROSHAQ9NRR4 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC7.42□□□□□ -1.226e-6■□□□□ 9.1
DROSHAQ9NRR4 ARID1B-231ENST00000637887 1468 ntTSL 57.37□□□□□ -1.236e-6■□□□□ 9.1
DROSHAQ9NRR4 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC4.52□□□□□ -1.696e-6■□□□□ 9.1
DROSHAQ9NRR4 MIR628-201ENST00000385229 95 ntBASIC-0.03□□□□□ -2.416e-6■□□□□ 9.1
DROSHAQ9NRR4 EP400NL-213ENST00000613241 455 ntTSL 320.35■□□□□ 0.853e-6■□□□□ 9.1
DROSHAQ9NRR4 SMG7-212ENST00000507469 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.121e-6■□□□□ 9.1
DROSHAQ9NRR4 SMG7-215ENST00000515829 5629 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.281e-6■□□□□ 9.1
DROSHAQ9NRR4 SMG7-201ENST00000347615 5788 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.391e-6■□□□□ 9.1
DROSHAQ9NRR4 SMG7-202ENST00000367537 5970 ntAPPRIS ALT2 TSL 5 BASIC10.55□□□□□ -0.721e-6■□□□□ 9.1
DROSHAQ9NRR4 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC30.94■■■□□ 2.544e-13■□□□□ 9
DROSHAQ9NRR4 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.24e-13■□□□□ 9
DROSHAQ9NRR4 CFL1-212ENST00000531413 636 ntTSL 3 BASIC26.47■■□□□ 1.834e-13■□□□□ 9
DROSHAQ9NRR4 CFL1-202ENST00000524553 860 ntTSL 2 BASIC26.17■■□□□ 1.784e-13■□□□□ 9
DROSHAQ9NRR4 CFL1-210ENST00000530945 1509 ntTSL 225.46■■□□□ 1.674e-13■□□□□ 9
DROSHAQ9NRR4 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC25.15■■□□□ 1.624e-13■□□□□ 9
DROSHAQ9NRR4 CFL1-214ENST00000534769 758 ntTSL 2 BASIC22.47■■□□□ 1.194e-13■□□□□ 9
DROSHAQ9NRR4 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.164e-13■□□□□ 9
DROSHAQ9NRR4 CFL1-206ENST00000527344 962 ntTSL 2 BASIC22.22■■□□□ 1.154e-13■□□□□ 9
DROSHAQ9NRR4 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC22■■□□□ 1.114e-13■□□□□ 9
DROSHAQ9NRR4 CFL1-207ENST00000527752 766 ntTSL 518.3■□□□□ 0.524e-13■□□□□ 9
DROSHAQ9NRR4 NEAT1-204ENST00000612303 572 ntTSL 3 BASIC20.27■□□□□ 0.846e-86■□□□□ 9
DROSHAQ9NRR4 RREB1-207ENST00000475946 9067 ntTSL 1 (best)9.55□□□□□ -0.882e-6■□□□□ 9
DROSHAQ9NRR4 PDIA4-202ENST00000413966 550 ntTSL 228.84■■■□□ 2.216e-18■□□□□ 9
DROSHAQ9NRR4 PTPRF-214ENST00000496043 415 ntTSL 519.63■□□□□ 0.739e-9■□□□□ 9
DROSHAQ9NRR4 PTPRF-213ENST00000481019 459 ntTSL 318.76■□□□□ 0.599e-9■□□□□ 9
DROSHAQ9NRR4 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC33.72■■■□□ 2.992e-9■□□□□ 9
DROSHAQ9NRR4 ZFPL1-206ENST00000526440 784 ntTSL 528.68■■■□□ 2.182e-9■□□□□ 9
DROSHAQ9NRR4 ZFPL1-205ENST00000526334 692 ntTSL 327.15■■□□□ 1.942e-9■□□□□ 9
DROSHAQ9NRR4 ZFPL1-214ENST00000533216 1146 ntTSL 1 (best)27.15■■□□□ 1.942e-9■□□□□ 9
DROSHAQ9NRR4 ZFPL1-204ENST00000526289 980 ntTSL 227.11■■□□□ 1.932e-9■□□□□ 9
DROSHAQ9NRR4 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.692e-9■□□□□ 9
DROSHAQ9NRR4 ZFPL1-202ENST00000453524 718 ntTSL 525.18■■□□□ 1.622e-9■□□□□ 9
DROSHAQ9NRR4 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC24.54■■□□□ 1.522e-9■□□□□ 9
DROSHAQ9NRR4 ZFPL1-212ENST00000531761 518 ntTSL 522.7■■□□□ 1.222e-9■□□□□ 9
DROSHAQ9NRR4 SUPT5H-203ENST00000402194 3698 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.152e-9■□□□□ 9
DROSHAQ9NRR4 SUPT5H-201ENST00000359191 3770 ntAPPRIS ALT1 TSL 1 (best) BASIC15.85■□□□□ 0.132e-9■□□□□ 9
DROSHAQ9NRR4 SUPT5H-204ENST00000432763 3710 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.112e-9■□□□□ 9
DROSHAQ9NRR4 SUPT5H-216ENST00000599335 3796 ntTSL 215.61■□□□□ 0.092e-9■□□□□ 9
DROSHAQ9NRR4 SUPT5H-215ENST00000599117 3902 ntAPPRIS P3 TSL 5 BASIC15.59■□□□□ 0.092e-9■□□□□ 9
DROSHAQ9NRR4 SUPT5H-213ENST00000598725 3742 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.12e-9■□□□□ 9
DROSHAQ9NRR4 PLEC-202ENST00000345136 14803 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.322e-9■□□□□ 9
DROSHAQ9NRR4 ZFPL1-208ENST00000526945 576 ntTSL 312.87□□□□□ -0.352e-9■□□□□ 9
Retrieved 100 of 16,331 protein–RNA pairs in 204.5 ms