RNA–Protein interactions for RNA: ENST00000565986.1

PDXDC1-212, Transcript of pyridoxal dependent decarboxylase domain containing 1, humanhuman

TSL 2

Gene PDXDC1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDXDC1-212ENST00000565986 NISCHQ9Y2I1 1504 aa31.14■■■□□ 2.58
PDXDC1-212ENST00000565986 CCDC180Q9P1Z9 1646 aa27.7■■■□□ 2.02
PDXDC1-212ENST00000565986 ABCC9O60706 1549 aa27■■□□□ 1.91
PDXDC1-212ENST00000565986 RB1CC1Q8TDY2 1594 aa26.03■■□□□ 1.76
PDXDC1-212ENST00000565986 NACADO15069 1562 aa26■■□□□ 1.75
PDXDC1-212ENST00000565986 ZCCHC6Q5VYS8 1495 aaKnown RBP25.98■■□□□ 1.75
PDXDC1-212ENST00000565986 DCAF8L2P0C7V8 631 aa25.96■■□□□ 1.75
PDXDC1-212ENST00000565986 MYO15BQ96JP2 1530 aa25.86■■□□□ 1.73
PDXDC1-212ENST00000565986 DCAF1Q9Y4B6 1507 aa25.78■■□□□ 1.72
PDXDC1-212ENST00000565986 UNC13AQ9UPW8 1703 aa25.43■■□□□ 1.66
PDXDC1-212ENST00000565986 SCRIBQ14160 1630 aa25.28■■□□□ 1.64
PDXDC1-212ENST00000565986 PABPN1Q86U42 306 aaKnown RBP eCLIP25.21■■□□□ 1.638e-6■□□□□ 8.9
PDXDC1-212ENST00000565986 BICRAQ9NZM4 1560 aa25.2■■□□□ 1.62
PDXDC1-212ENST00000565986 SHROOM4Q9ULL8 1493 aa25■■□□□ 1.59
PDXDC1-212ENST00000565986 DNAJC5BQ9UF47 199 aa24.63■■□□□ 1.53
PDXDC1-212ENST00000565986 EIF4G1Q04637 1599 aaKnown RBP24.55■■□□□ 1.52
PDXDC1-212ENST00000565986 CC2D2AQ9P2K1 1620 aa24.43■■□□□ 1.5
PDXDC1-212ENST00000565986 CECR2Q9BXF3 1484 aa24.26■■□□□ 1.47
PDXDC1-212ENST00000565986 SMARCA4P51532 1647 aa24.17■■□□□ 1.46
PDXDC1-212ENST00000565986 BAZ1AQ9NRL2 1556 aaPredicted RBP24.16■■□□□ 1.46
PDXDC1-212ENST00000565986 SMARCA2P51531 1590 aa24.01■■□□□ 1.43
PDXDC1-212ENST00000565986 ATAD2BQ9ULI0 1458 aa24■■□□□ 1.43
PDXDC1-212ENST00000565986 MROH2BQ7Z745 1585 aa23.99■■□□□ 1.43
PDXDC1-212ENST00000565986 NCAPD3P42695 1498 aa23.96■■□□□ 1.43
PDXDC1-212ENST00000565986 PEG3Q9GZU2 1588 aa23.92■■□□□ 1.42
PDXDC1-212ENST00000565986 HMGXB3Q12766 1538 aa23.89■■□□□ 1.42
PDXDC1-212ENST00000565986 BAZ1BQ9UIG0 1483 aaKnown RBP23.84■■□□□ 1.41
PDXDC1-212ENST00000565986 WIZO95785 1651 aa23.75■■□□□ 1.39
PDXDC1-212ENST00000565986 RSF1Q96T23 1441 aaPredicted RBP23.74■■□□□ 1.39
PDXDC1-212ENST00000565986 TOP2AP11388 1531 aaKnown RBP23.53■■□□□ 1.36
PDXDC1-212ENST00000565986 NESP48681 1621 aa23.37■■□□□ 1.33
PDXDC1-212ENST00000565986 LAMC3Q9Y6N6 1575 aa23.36■■□□□ 1.33
PDXDC1-212ENST00000565986 ERCC6Q03468 1493 aa23.3■■□□□ 1.32
PDXDC1-212ENST00000565986 CADPSQ9ULU8 1353 aa23.27■■□□□ 1.31
PDXDC1-212ENST00000565986 CCDC88BA6NC98 1476 aa23.21■■□□□ 1.31
PDXDC1-212ENST00000565986 PDS5BQ9NTI5 1447 aa23.19■■□□□ 1.3
PDXDC1-212ENST00000565986 SUPT5HO00267 1087 aaKnown RBP23.19■■□□□ 1.3
PDXDC1-212ENST00000565986 CFTRP13569 1480 aa23.16■■□□□ 1.3
PDXDC1-212ENST00000565986 KIF21AQ7Z4S6 1674 aa23.13■■□□□ 1.29
PDXDC1-212ENST00000565986 PRDM2Q13029 1718 aa23.05■■□□□ 1.28
PDXDC1-212ENST00000565986 THOC2Q8NI27 1593 aaKnown RBP23.04■■□□□ 1.28
PDXDC1-212ENST00000565986 FANCD2Q9BXW9 1451 aa23.04■■□□□ 1.28
PDXDC1-212ENST00000565986 CEP164Q9UPV0 1460 aa23.02■■□□□ 1.28
PDXDC1-212ENST00000565986 CUX2O14529 1486 aa23.01■■□□□ 1.27
PDXDC1-212ENST00000565986 MRC2Q9UBG0 1479 aa22.96■■□□□ 1.27
PDXDC1-212ENST00000565986 WDR62O43379 1518 aa22.87■■□□□ 1.25
PDXDC1-212ENST00000565986 URB2Q14146 1524 aaKnown RBP22.79■■□□□ 1.24
PDXDC1-212ENST00000565986 ABCC8Q09428 1581 aa22.67■■□□□ 1.22
PDXDC1-212ENST00000565986 TOPBP1Q92547 1522 aa22.67■■□□□ 1.22
PDXDC1-212ENST00000565986 DNMBPQ6XZF7 1577 aa22.67■■□□□ 1.22
PDXDC1-212ENST00000565986 CUX1P39880 1505 aa22.52■■□□□ 1.2
PDXDC1-212ENST00000565986 IFT140Q96RY7 1462 aa22.52■■□□□ 1.2
PDXDC1-212ENST00000565986 POLA1P09884 1462 aaPredicted RBP22.48■■□□□ 1.19
PDXDC1-212ENST00000565986 FGD5Q6ZNL6 1462 aa22.44■■□□□ 1.18
PDXDC1-212ENST00000565986 TARBP1Q13395 1621 aaKnown RBP22.42■■□□□ 1.18
PDXDC1-212ENST00000565986 WRNQ14191 1432 aaPredicted RBP eCLIP22.4■■□□□ 1.18
PDXDC1-212ENST00000565986 ZNF608Q9ULD9 1512 aaPredicted RBP22.38■■□□□ 1.17
PDXDC1-212ENST00000565986 SOGA1O94964 1423 aa22.37■■□□□ 1.17
PDXDC1-212ENST00000565986 RAD54L2Q9Y4B4 1467 aa22.36■■□□□ 1.17
PDXDC1-212ENST00000565986 BIVM-ERCC5R4GMW8 1640 aa22.36■■□□□ 1.17
PDXDC1-212ENST00000565986 TOP2BQ02880 1626 aa22.35■■□□□ 1.17
PDXDC1-212ENST00000565986 SYNJ1O43426 1573 aa22.35■■□□□ 1.17
PDXDC1-212ENST00000565986 EIF4G3O43432 1585 aaKnown RBP22.34■■□□□ 1.17
PDXDC1-212ENST00000565986 WDR97A6NE52 1622 aa22.28■■□□□ 1.16
PDXDC1-212ENST00000565986 AQRO60306 1485 aaKnown RBP eCLIP22.26■■□□□ 1.151e-6■□□□□ 10.8
PDXDC1-212ENST00000565986 TDRD9Q8NDG6 1382 aaKnown RBP22.23■■□□□ 1.15
PDXDC1-212ENST00000565986 ABCA10Q8WWZ4 1543 aa22.22■■□□□ 1.15
PDXDC1-212ENST00000565986 DNAJC5Q9H3Z4 198 aa22.15■■□□□ 1.14
PDXDC1-212ENST00000565986 ABCA5Q8WWZ7 1642 aa22.15■■□□□ 1.14
PDXDC1-212ENST00000565986 GAPVD1Q14C86 1478 aa22.14■■□□□ 1.13
PDXDC1-212ENST00000565986 GRIN2BQ13224 1484 aa22.13■■□□□ 1.13
PDXDC1-212ENST00000565986 PBRM1Q86U86 1689 aa22.11■■□□□ 1.13
PDXDC1-212ENST00000565986 SNAPC4Q5SXM2 1469 aa22.09■■□□□ 1.13
PDXDC1-212ENST00000565986 MAGI1Q96QZ7 1491 aaPredicted RBP22.08■■□□□ 1.12
PDXDC1-212ENST00000565986 CHD1O14646 1710 aa22.05■■□□□ 1.12
PDXDC1-212ENST00000565986 OSCARQ8IYS5 282 aa22.02■■□□□ 1.12
PDXDC1-212ENST00000565986 FBLN2P98095 1184 aa21.99■■□□□ 1.11
PDXDC1-212ENST00000565986 SYNJ2O15056 1496 aa21.97■■□□□ 1.11
PDXDC1-212ENST00000565986 ERICH3Q5RHP9 1530 aa21.97■■□□□ 1.11
PDXDC1-212ENST00000565986 ADAMTS12P58397 1594 aa21.95■■□□□ 1.1
PDXDC1-212ENST00000565986 CHMP7Q8WUX9 453 aaPredicted RBP21.94■■□□□ 1.1
PDXDC1-212ENST00000565986 KIF27Q86VH2 1401 aa21.94■■□□□ 1.1
PDXDC1-212ENST00000565986 TRIM41Q8WV44 630 aa21.89■■□□□ 1.09
PDXDC1-212ENST00000565986 FHAD1B1AJZ9 1412 aa21.89■■□□□ 1.09
PDXDC1-212ENST00000565986 GRIN2AQ12879 1464 aa21.84■■□□□ 1.09
PDXDC1-212ENST00000565986 CUL7Q14999 1698 aa21.81■■□□□ 1.08
PDXDC1-212ENST00000565986 IGF1RP08069 1367 aa21.79■■□□□ 1.08
PDXDC1-212ENST00000565986 CLASP1Q7Z460 1538 aa21.79■■□□□ 1.08
PDXDC1-212ENST00000565986 NUP160Q12769 1436 aa21.73■■□□□ 1.07
PDXDC1-212ENST00000565986 CEP170Q5SW79 1584 aa21.73■■□□□ 1.07
PDXDC1-212ENST00000565986 ARHGEF11O15085 1522 aa21.71■■□□□ 1.07
PDXDC1-212ENST00000565986 RUSC2Q8N2Y8 1516 aa21.71■■□□□ 1.07
PDXDC1-212ENST00000565986 RIMBP3CA6NJZ7 1639 aa21.71■■□□□ 1.07
PDXDC1-212ENST00000565986 RIMBP3BA6NNM3 1639 aa21.71■■□□□ 1.07
PDXDC1-212ENST00000565986 RIMBP3Q9UFD9 1639 aa21.71■■□□□ 1.07
PDXDC1-212ENST00000565986 CARMIL1Q5VZK9 1371 aa21.69■■□□□ 1.06
PDXDC1-212ENST00000565986 CHIC1Q5VXU3 224 aa21.65■■□□□ 1.06
PDXDC1-212ENST00000565986 RAPGEF2Q9Y4G8 1499 aa21.59■■□□□ 1.05
PDXDC1-212ENST00000565986 EEA1Q15075 1411 aa21.58■■□□□ 1.05
PDXDC1-212ENST00000565986 SHROOM2Q13796 1616 aa21.57■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms