RNA–Protein interactions for RNA: ENST00000535621.6

PDXDC1-205, Transcript of pyridoxal dependent decarboxylase domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene PDXDC1, Length 2,048 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDXDC1-205ENST00000535621 NISCHQ9Y2I1 1504 aa47.79■■■■■ 5.24
PDXDC1-205ENST00000535621 CCDC180Q9P1Z9 1646 aa41.8■■■■■ 4.28
PDXDC1-205ENST00000535621 ZCCHC6Q5VYS8 1495 aaKnown RBP40.07■■■■■ 4.01
PDXDC1-205ENST00000535621 ABCC9O60706 1549 aa40■■■■□ 3.99
PDXDC1-205ENST00000535621 DCAF8L2P0C7V8 631 aa39.68■■■■□ 3.94
PDXDC1-205ENST00000535621 DCAF1Q9Y4B6 1507 aa39.4■■■■□ 3.9
PDXDC1-205ENST00000535621 MYO15BQ96JP2 1530 aa39.02■■■■□ 3.84
PDXDC1-205ENST00000535621 NACADO15069 1562 aa38.98■■■■□ 3.83
PDXDC1-205ENST00000535621 SHROOM4Q9ULL8 1493 aa38.91■■■■□ 3.82
PDXDC1-205ENST00000535621 RB1CC1Q8TDY2 1594 aa38.76■■■■□ 3.8
PDXDC1-205ENST00000535621 SCRIBQ14160 1630 aa38.55■■■■□ 3.76
PDXDC1-205ENST00000535621 UNC13AQ9UPW8 1703 aa38.18■■■■□ 3.7
PDXDC1-205ENST00000535621 BICRAQ9NZM4 1560 aa37.72■■■■□ 3.63
PDXDC1-205ENST00000535621 PABPN1Q86U42 306 aaKnown RBP eCLIP37.66■■■■□ 3.628e-6■□□□□ 8.9
PDXDC1-205ENST00000535621 SUPT5HO00267 1087 aaKnown RBP37.29■■■■□ 3.56
PDXDC1-205ENST00000535621 CECR2Q9BXF3 1484 aa37.28■■■■□ 3.56
PDXDC1-205ENST00000535621 MROH2BQ7Z745 1585 aa36.99■■■■□ 3.51
PDXDC1-205ENST00000535621 RSF1Q96T23 1441 aaPredicted RBP36.96■■■■□ 3.51
PDXDC1-205ENST00000535621 BAZ1AQ9NRL2 1556 aaPredicted RBP36.89■■■■□ 3.5
PDXDC1-205ENST00000535621 SMARCA4P51532 1647 aa36.85■■■■□ 3.49
PDXDC1-205ENST00000535621 WIZO95785 1651 aa36.71■■■■□ 3.47
PDXDC1-205ENST00000535621 EIF4G1Q04637 1599 aaKnown RBP36.58■■■■□ 3.45
PDXDC1-205ENST00000535621 PEG3Q9GZU2 1588 aa36.34■■■■□ 3.41
PDXDC1-205ENST00000535621 ATAD2BQ9ULI0 1458 aa36.3■■■■□ 3.4
PDXDC1-205ENST00000535621 SMARCA2P51531 1590 aa36.21■■■■□ 3.39
PDXDC1-205ENST00000535621 TOP2AP11388 1531 aaKnown RBP36.2■■■■□ 3.39
PDXDC1-205ENST00000535621 CC2D2AQ9P2K1 1620 aa36.16■■■■□ 3.38
PDXDC1-205ENST00000535621 BAZ1BQ9UIG0 1483 aaKnown RBP36.07■■■■□ 3.37
PDXDC1-205ENST00000535621 NCAPD3P42695 1498 aa35.99■■■■□ 3.35
PDXDC1-205ENST00000535621 HMGXB3Q12766 1538 aa35.92■■■■□ 3.34
PDXDC1-205ENST00000535621 CCDC88BA6NC98 1476 aa35.87■■■■□ 3.33
PDXDC1-205ENST00000535621 CHIC1Q5VXU3 224 aa35.75■■■■□ 3.31
PDXDC1-205ENST00000535621 DNAJC5BQ9UF47 199 aa35.66■■■■□ 3.3
PDXDC1-205ENST00000535621 CFTRP13569 1480 aa35.12■■■■□ 3.21
PDXDC1-205ENST00000535621 ABCC8Q09428 1581 aa35.1■■■■□ 3.21
PDXDC1-205ENST00000535621 CADPSQ9ULU8 1353 aa35.06■■■■□ 3.2
PDXDC1-205ENST00000535621 TRIM41Q8WV44 630 aa35.05■■■■□ 3.2
PDXDC1-205ENST00000535621 NESP48681 1621 aa35.04■■■■□ 3.2
PDXDC1-205ENST00000535621 PRDM2Q13029 1718 aa35■■■■□ 3.19
PDXDC1-205ENST00000535621 LAMC3Q9Y6N6 1575 aa34.84■■■■□ 3.17
PDXDC1-205ENST00000535621 WRNQ14191 1432 aaPredicted RBP eCLIP34.77■■■■□ 3.16
PDXDC1-205ENST00000535621 SYNJ1O43426 1573 aa34.75■■■■□ 3.15
PDXDC1-205ENST00000535621 FANCD2Q9BXW9 1451 aa34.72■■■■□ 3.15
PDXDC1-205ENST00000535621 KIF21AQ7Z4S6 1674 aa34.62■■■■□ 3.13
PDXDC1-205ENST00000535621 CUX1P39880 1505 aa34.6■■■■□ 3.13
PDXDC1-205ENST00000535621 TOP2BQ02880 1626 aa34.55■■■■□ 3.12
PDXDC1-205ENST00000535621 PDS5BQ9NTI5 1447 aa34.54■■■■□ 3.12
PDXDC1-205ENST00000535621 BIVM-ERCC5R4GMW8 1640 aa34.53■■■■□ 3.12
PDXDC1-205ENST00000535621 CEP164Q9UPV0 1460 aa34.52■■■■□ 3.12
PDXDC1-205ENST00000535621 FAM9AQ8IZU1 332 aaPredicted RBP34.42■■■■□ 3.1
PDXDC1-205ENST00000535621 LOC105371045A0A1W2PR82 267 aa34.4■■■■□ 3.1
PDXDC1-205ENST00000535621 URB2Q14146 1524 aaKnown RBP34.36■■■■□ 3.09
PDXDC1-205ENST00000535621 DNMBPQ6XZF7 1577 aa34.33■■■■□ 3.09
PDXDC1-205ENST00000535621 TOPBP1Q92547 1522 aa34.32■■■■□ 3.08
PDXDC1-205ENST00000535621 SOGA1O94964 1423 aa34.31■■■■□ 3.08
PDXDC1-205ENST00000535621 RUSC2Q8N2Y8 1516 aa34.27■■■■□ 3.08
PDXDC1-205ENST00000535621 FGD5Q6ZNL6 1462 aa34.26■■■■□ 3.07
PDXDC1-205ENST00000535621 ERCC6Q03468 1493 aa34.24■■■■□ 3.07
PDXDC1-205ENST00000535621 MRC2Q9UBG0 1479 aa34.18■■■■□ 3.06
PDXDC1-205ENST00000535621 EEA1Q15075 1411 aa34.14■■■■□ 3.06
PDXDC1-205ENST00000535621 POLA1P09884 1462 aaPredicted RBP34.14■■■■□ 3.06
PDXDC1-205ENST00000535621 RAD54L2Q9Y4B4 1467 aa34.08■■■■□ 3.05
PDXDC1-205ENST00000535621 THOC2Q8NI27 1593 aaKnown RBP34.08■■■■□ 3.05
PDXDC1-205ENST00000535621 WDR62O43379 1518 aa34.03■■■■□ 3.04
PDXDC1-205ENST00000535621 EHMT2Q96KQ7 1210 aa34.03■■■■□ 3.04
PDXDC1-205ENST00000535621 CSRNP3Q8WYN3 585 aa33.98■■■■□ 3.03
PDXDC1-205ENST00000535621 CUX2O14529 1486 aa33.96■■■■□ 3.03
PDXDC1-205ENST00000535621 WDR97A6NE52 1622 aa33.9■■■■□ 3.02
PDXDC1-205ENST00000535621 ABCA10Q8WWZ4 1543 aa33.88■■■■□ 3.01
PDXDC1-205ENST00000535621 KIF27Q86VH2 1401 aa33.87■■■■□ 3.01
PDXDC1-205ENST00000535621 TARBP1Q13395 1621 aaKnown RBP33.86■■■■□ 3.01
PDXDC1-205ENST00000535621 TDRD9Q8NDG6 1382 aaKnown RBP33.75■■■□□ 2.99
PDXDC1-205ENST00000535621 KIF21BO75037 1637 aa33.72■■■□□ 2.99
PDXDC1-205ENST00000535621 ABCA5Q8WWZ7 1642 aa33.7■■■□□ 2.98
PDXDC1-205ENST00000535621 GOLGA3Q08378 1498 aa33.69■■■□□ 2.98
PDXDC1-205ENST00000535621 IFT140Q96RY7 1462 aa33.67■■■□□ 2.98
PDXDC1-205ENST00000535621 IGF1RP08069 1367 aa33.66■■■□□ 2.98
PDXDC1-205ENST00000535621 ZNF608Q9ULD9 1512 aaPredicted RBP33.65■■■□□ 2.98
PDXDC1-205ENST00000535621 RAPGEF2Q9Y4G8 1499 aa33.62■■■□□ 2.97
PDXDC1-205ENST00000535621 TNIKQ9UKE5 1360 aa33.61■■■□□ 2.97
PDXDC1-205ENST00000535621 AQRO60306 1485 aaKnown RBP eCLIP33.61■■■□□ 2.973e-7■■■■□ 23.4
PDXDC1-205ENST00000535621 GAPVD1Q14C86 1478 aa33.6■■■□□ 2.97
PDXDC1-205ENST00000535621 PRXQ9BXM0 1461 aa33.6■■■□□ 2.97
PDXDC1-205ENST00000535621 UBTFP17480 764 aaKnown RBP33.55■■■□□ 2.96
PDXDC1-205ENST00000535621 PBRM1Q86U86 1689 aa33.53■■■□□ 2.96
PDXDC1-205ENST00000535621 EIF4G3O43432 1585 aaKnown RBP33.51■■■□□ 2.95
PDXDC1-205ENST00000535621 ERICH3Q5RHP9 1530 aa33.48■■■□□ 2.95
PDXDC1-205ENST00000535621 CARMIL1Q5VZK9 1371 aa33.47■■■□□ 2.95
PDXDC1-205ENST00000535621 CEP162Q5TB80 1403 aa33.44■■■□□ 2.94
PDXDC1-205ENST00000535621 CUL7Q14999 1698 aa33.41■■■□□ 2.94
PDXDC1-205ENST00000535621 GRIN2BQ13224 1484 aa33.36■■■□□ 2.93
PDXDC1-205ENST00000535621 ADAMTS12P58397 1594 aa33.28■■■□□ 2.92
PDXDC1-205ENST00000535621 SNAPC4Q5SXM2 1469 aa33.26■■■□□ 2.92
PDXDC1-205ENST00000535621 RANGAP1P46060 587 aaPredicted RBP33.21■■■□□ 2.91
PDXDC1-205ENST00000535621 FHAD1B1AJZ9 1412 aa33.19■■■□□ 2.9
PDXDC1-205ENST00000535621 CLIP1P30622 1438 aa33.16■■■□□ 2.9
PDXDC1-205ENST00000535621 MAGI1Q96QZ7 1491 aaPredicted RBP33.11■■■□□ 2.89
PDXDC1-205ENST00000535621 CTTNBP2Q8WZ74 1663 aa33.08■■■□□ 2.89
PDXDC1-205ENST00000535621 SYNJ2O15056 1496 aa33■■■□□ 2.87
PDXDC1-205ENST00000535621 GRIN2AQ12879 1464 aa33■■■□□ 2.87
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms