RNA–Protein interactions for RNA: ENST00000515829.6

SMG7-215, Transcript of SMG7, nonsense mediated mRNA decay factor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SMG7, Length 5,629 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG7-215ENST00000515829 NISCHQ9Y2I1 1504 aa18.7■□□□□ 0.58
SMG7-215ENST00000515829 DCAF8L2P0C7V8 631 aa17.53■□□□□ 0.4
SMG7-215ENST00000515829 SUPT5HO00267 1087 aaKnown RBP17.46■□□□□ 0.39
SMG7-215ENST00000515829 SHROOM4Q9ULL8 1493 aa17.42■□□□□ 0.38
SMG7-215ENST00000515829 PCGF6Q9BYE7 350 aa16.68■□□□□ 0.26
SMG7-215ENST00000515829 EHMT2Q96KQ7 1210 aa16.57■□□□□ 0.24
SMG7-215ENST00000515829 FAM9AQ8IZU1 332 aaPredicted RBP16.34■□□□□ 0.21
SMG7-215ENST00000515829 HRCP23327 699 aa16.3■□□□□ 0.2
SMG7-215ENST00000515829 CHIC1Q5VXU3 224 aa16.29■□□□□ 0.2
SMG7-215ENST00000515829 LOC105371045A0A1W2PR82 267 aa16.18■□□□□ 0.18
SMG7-215ENST00000515829 PPARGC1BQ86YN6 1023 aaKnown RBP16.17■□□□□ 0.18
SMG7-215ENST00000515829 TRIM41Q8WV44 630 aa16.08■□□□□ 0.16
SMG7-215ENST00000515829 TTBK1Q5TCY1 1321 aaPredicted RBP16.04■□□□□ 0.16
SMG7-215ENST00000515829 TRIM26Q12899 539 aaPredicted RBP15.97■□□□□ 0.15
SMG7-215ENST00000515829 ZEB1P37275 1124 aaPredicted RBP15.91■□□□□ 0.14
SMG7-215ENST00000515829 CCER1Q8TC90 406 aaPredicted RBP15.82■□□□□ 0.12
SMG7-215ENST00000515829 MYO15BQ96JP2 1530 aa15.71■□□□□ 0.11
SMG7-215ENST00000515829 ZCCHC6Q5VYS8 1495 aaKnown RBP15.67■□□□□ 0.1
SMG7-215ENST00000515829 RANGAP1P46060 587 aaPredicted RBP15.63■□□□□ 0.09
SMG7-215ENST00000515829 APLP2Q06481 763 aa15.59■□□□□ 0.09
SMG7-215ENST00000515829 CENPBP07199 599 aaPredicted RBP15.59■□□□□ 0.09
SMG7-215ENST00000515829 UBTFP17480 764 aaKnown RBP15.58■□□□□ 0.08
SMG7-215ENST00000515829 PELP1Q8IZL8 1130 aaKnown RBP15.55■□□□□ 0.08
SMG7-215ENST00000515829 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.55■□□□□ 0.08
SMG7-215ENST00000515829 YTHDC1Q96MU7 727 aaKnown RBP15.54■□□□□ 0.08
SMG7-215ENST00000515829 DCAF1Q9Y4B6 1507 aa15.43■□□□□ 0.06
SMG7-215ENST00000515829 DIEXFQ68CQ4 756 aaKnown RBP15.33■□□□□ 0.04
SMG7-215ENST00000515829 HNRNPUL2Q1KMD3 747 aaKnown RBP15.32■□□□□ 0.04
SMG7-215ENST00000515829 CCDC180Q9P1Z9 1646 aa15.28■□□□□ 0.04
SMG7-215ENST00000515829 ABCC9O60706 1549 aa15.23■□□□□ 0.03
SMG7-215ENST00000515829 GTF3C3Q9Y5Q9 886 aa15.2■□□□□ 0.02
SMG7-215ENST00000515829 SCRIBQ14160 1630 aa15.18■□□□□ 0.02
SMG7-215ENST00000515829 SCAF1Q9H7N4 1312 aaKnown RBP15.14■□□□□ 0.01
SMG7-215ENST00000515829 ACIN1Q9UKV3 1341 aaKnown RBP15.13■□□□□ 0.01
SMG7-215ENST00000515829 ATP1B4Q9UN42 357 aaPredicted RBP15.12■□□□□ 0.01
SMG7-215ENST00000515829 ITGAEP38570 1179 aa15.1■□□□□ 0.01
SMG7-215ENST00000515829 RSF1Q96T23 1441 aaPredicted RBP15.07■□□□□ 0
SMG7-215ENST00000515829 NEUROD1Q13562 356 aa15.04■□□□□ -0
SMG7-215ENST00000515829 PABPN1Q86U42 306 aaKnown RBP eCLIP15.03■□□□□ -0
SMG7-215ENST00000515829 ZNF316A6NFI3 1004 aaPredicted RBP15.01□□□□□ -0.01
SMG7-215ENST00000515829 CSRNP3Q8WYN3 585 aa14.97□□□□□ -0.01
SMG7-215ENST00000515829 MYT1Q01538 1121 aa14.95□□□□□ -0.02
SMG7-215ENST00000515829 NEFLP07196 543 aa14.85□□□□□ -0.03
SMG7-215ENST00000515829 RB1CC1Q8TDY2 1594 aa14.8□□□□□ -0.04
SMG7-215ENST00000515829 CECR2Q9BXF3 1484 aa14.79□□□□□ -0.04
SMG7-215ENST00000515829 MIER1Q8N108 512 aa14.77□□□□□ -0.05
SMG7-215ENST00000515829 BCANQ96GW7 911 aa14.75□□□□□ -0.05
SMG7-215ENST00000515829 ERICH6Q7L0X2 663 aa14.74□□□□□ -0.05
SMG7-215ENST00000515829 CEP162Q5TB80 1403 aa14.72□□□□□ -0.05
SMG7-215ENST00000515829 FAM50AQ14320 339 aaKnown RBP14.71□□□□□ -0.06
SMG7-215ENST00000515829 MROH2BQ7Z745 1585 aa14.63□□□□□ -0.07
SMG7-215ENST00000515829 CNGB1Q14028 1251 aaPredicted RBP14.61□□□□□ -0.07
SMG7-215ENST00000515829 SOGA1O94964 1423 aa14.6□□□□□ -0.07
SMG7-215ENST00000515829 P3H3Q8IVL6 736 aa14.58□□□□□ -0.08
SMG7-215ENST00000515829 TNIKQ9UKE5 1360 aa14.58□□□□□ -0.08
SMG7-215ENST00000515829 CLIP1P30622 1438 aa14.58□□□□□ -0.08
SMG7-215ENST00000515829 ABCC8Q09428 1581 aa14.53□□□□□ -0.08
SMG7-215ENST00000515829 POLR3GLQ9BT43 218 aa14.53□□□□□ -0.08
SMG7-215ENST00000515829 CCDC88BA6NC98 1476 aa14.52□□□□□ -0.08
SMG7-215ENST00000515829 GOLGA3Q08378 1498 aa14.52□□□□□ -0.08
SMG7-215ENST00000515829 NACADO15069 1562 aa14.51□□□□□ -0.09
SMG7-215ENST00000515829 DDX10Q13206 875 aaKnown RBP14.49□□□□□ -0.09
SMG7-215ENST00000515829 WIZO95785 1651 aa14.48□□□□□ -0.09
SMG7-215ENST00000515829 WRNQ14191 1432 aaPredicted RBP eCLIP14.48□□□□□ -0.09
SMG7-215ENST00000515829 ANP32CO43423 234 aa14.48□□□□□ -0.09
SMG7-215ENST00000515829 EEA1Q15075 1411 aa14.47□□□□□ -0.09
SMG7-215ENST00000515829 FKBP8Q14318 412 aa14.46□□□□□ -0.1
SMG7-215ENST00000515829 BAZ1AQ9NRL2 1556 aaPredicted RBP14.45□□□□□ -0.1
SMG7-215ENST00000515829 HIRIP3Q9BW71 556 aaPredicted RBP14.44□□□□□ -0.1
SMG7-215ENST00000515829 TRIM52Q96A61 297 aa14.42□□□□□ -0.1
SMG7-215ENST00000515829 CEP164Q9UPV0 1460 aa14.38□□□□□ -0.11
SMG7-215ENST00000515829 RUSC2Q8N2Y8 1516 aa14.35□□□□□ -0.11
SMG7-215ENST00000515829 CLSPNQ9HAW4 1339 aa14.33□□□□□ -0.12
SMG7-215ENST00000515829 ARID3CA6NKF2 412 aa14.32□□□□□ -0.12
SMG7-215ENST00000515829 SUPT16HQ9Y5B9 1047 aaKnown RBP14.3□□□□□ -0.12
SMG7-215ENST00000515829 KANK4Q5T7N3 995 aaPredicted RBP14.28□□□□□ -0.12
SMG7-215ENST00000515829 CDK11AQ9UQ88 783 aaPredicted RBP14.28□□□□□ -0.12
SMG7-215ENST00000515829 SIN3AQ96ST3 1273 aa14.26□□□□□ -0.13
SMG7-215ENST00000515829 VPS8Q8N3P4 1428 aa14.26□□□□□ -0.13
SMG7-215ENST00000515829 HNRNPUQ00839 825 aaKnown RBP eCLIP14.26□□□□□ -0.13
SMG7-215ENST00000515829 ZNF326Q5BKZ1 582 aaKnown RBP14.26□□□□□ -0.13
SMG7-215ENST00000515829 TONSLQ96HA7 1378 aa14.26□□□□□ -0.13
SMG7-215ENST00000515829 IRX6P78412 446 aaPredicted RBP14.23□□□□□ -0.13
SMG7-215ENST00000515829 BAZ1BQ9UIG0 1483 aaKnown RBP14.23□□□□□ -0.13
SMG7-215ENST00000515829 TOP2AP11388 1531 aaKnown RBP14.23□□□□□ -0.13
SMG7-215ENST00000515829 MYT1LQ9UL68 1186 aa14.21□□□□□ -0.14
SMG7-215ENST00000515829 CHIC2Q9UKJ5 165 aa14.2□□□□□ -0.14
SMG7-215ENST00000515829 FAM9BQ8IZU0 186 aa14.17□□□□□ -0.14
SMG7-215ENST00000515829 CCNB3Q8WWL7 1395 aa14.16□□□□□ -0.14
SMG7-215ENST00000515829 RAPGEF2Q9Y4G8 1499 aa14.15□□□□□ -0.14
SMG7-215ENST00000515829 KIF27Q86VH2 1401 aa14.14□□□□□ -0.15
SMG7-215ENST00000515829 KCNH8Q96L42 1107 aa14.13□□□□□ -0.15
SMG7-215ENST00000515829 ANP32EQ9BTT0 268 aa14.1□□□□□ -0.15
SMG7-215ENST00000515829 SMARCA4P51532 1647 aa14.09□□□□□ -0.15
SMG7-215ENST00000515829 RRP7BPQ9NSQ0 103 aa14.09□□□□□ -0.15
SMG7-215ENST00000515829 DAXXQ9UER7 740 aaPredicted RBP14.08□□□□□ -0.16
SMG7-215ENST00000515829 DHX57Q6P158 1386 aaKnown RBP14.08□□□□□ -0.16
SMG7-215ENST00000515829 MTUS2Q5JR59 1369 aa14.08□□□□□ -0.16
SMG7-215ENST00000515829 RTL5Q5HYW3 569 aaPredicted RBP14.08□□□□□ -0.16
SMG7-215ENST00000515829 SMARCA2P51531 1590 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms