RNA–Protein interactions for RNA: ENST00000356634.7

KDM1A-201, Transcript of lysine demethylase 1A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene KDM1A, Length 3,033 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KDM1A-201ENST00000356634 NISCHQ9Y2I1 1504 aa34.06■■■■□ 3.04
KDM1A-201ENST00000356634 SHROOM4Q9ULL8 1493 aa30.31■■■□□ 2.44
KDM1A-201ENST00000356634 SUPT5HO00267 1087 aaKnown RBP30.11■■■□□ 2.41
KDM1A-201ENST00000356634 DCAF8L2P0C7V8 631 aa29.69■■■□□ 2.34
KDM1A-201ENST00000356634 HRCP23327 699 aa29.67■■■□□ 2.34
KDM1A-201ENST00000356634 PCGF6Q9BYE7 350 aa29.44■■■□□ 2.3
KDM1A-201ENST00000356634 MYO15BQ96JP2 1530 aa29.31■■■□□ 2.28
KDM1A-201ENST00000356634 CHIC1Q5VXU3 224 aa29.28■■■□□ 2.28
KDM1A-201ENST00000356634 PPARGC1BQ86YN6 1023 aaKnown RBP29.24■■■□□ 2.27
KDM1A-201ENST00000356634 ZCCHC6Q5VYS8 1495 aaKnown RBP28.88■■■□□ 2.21
KDM1A-201ENST00000356634 LOC105371045A0A1W2PR82 267 aa28.71■■■□□ 2.19
KDM1A-201ENST00000356634 DCAF1Q9Y4B6 1507 aa28.51■■■□□ 2.15
KDM1A-201ENST00000356634 TRIM26Q12899 539 aaPredicted RBP28.42■■■□□ 2.14
KDM1A-201ENST00000356634 CCDC180Q9P1Z9 1646 aa28.41■■■□□ 2.14
KDM1A-201ENST00000356634 PELP1Q8IZL8 1130 aaKnown RBP28.06■■■□□ 2.08
KDM1A-201ENST00000356634 ZEB1P37275 1124 aaPredicted RBP28.04■■■□□ 2.08
KDM1A-201ENST00000356634 SCAF1Q9H7N4 1312 aaKnown RBP27.92■■■□□ 2.06
KDM1A-201ENST00000356634 EHMT2Q96KQ7 1210 aa27.92■■■□□ 2.06
KDM1A-201ENST00000356634 FAM9AQ8IZU1 332 aaPredicted RBP27.91■■■□□ 2.06
KDM1A-201ENST00000356634 TRIM41Q8WV44 630 aa27.8■■■□□ 2.04
KDM1A-201ENST00000356634 ABCC9O60706 1549 aa27.55■■■□□ 2
KDM1A-201ENST00000356634 SCRIBQ14160 1630 aa27.51■■□□□ 1.99
KDM1A-201ENST00000356634 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.4■■□□□ 1.98
KDM1A-201ENST00000356634 RSF1Q96T23 1441 aaPredicted RBP27.37■■□□□ 1.97
KDM1A-201ENST00000356634 CCER1Q8TC90 406 aaPredicted RBP27.36■■□□□ 1.97
KDM1A-201ENST00000356634 ACIN1Q9UKV3 1341 aaKnown RBP27.34■■□□□ 1.97
KDM1A-201ENST00000356634 NEUROD1Q13562 356 aa27.33■■□□□ 1.97
KDM1A-201ENST00000356634 RB1CC1Q8TDY2 1594 aa27.23■■□□□ 1.95
KDM1A-201ENST00000356634 GTF3C3Q9Y5Q9 886 aa27.2■■□□□ 1.95
KDM1A-201ENST00000356634 TTBK1Q5TCY1 1321 aaPredicted RBP27.17■■□□□ 1.94
KDM1A-201ENST00000356634 DIEXFQ68CQ4 756 aaKnown RBP27.15■■□□□ 1.94
KDM1A-201ENST00000356634 CENPBP07199 599 aaPredicted RBP27.14■■□□□ 1.94
KDM1A-201ENST00000356634 CECR2Q9BXF3 1484 aa27.02■■□□□ 1.92
KDM1A-201ENST00000356634 YTHDC1Q96MU7 727 aaKnown RBP26.87■■□□□ 1.89
KDM1A-201ENST00000356634 MYT1Q01538 1121 aa26.82■■□□□ 1.88
KDM1A-201ENST00000356634 MROH2BQ7Z745 1585 aa26.74■■□□□ 1.87
KDM1A-201ENST00000356634 PABPN1Q86U42 306 aaKnown RBP eCLIP26.72■■□□□ 1.87
KDM1A-201ENST00000356634 ZNF316A6NFI3 1004 aaPredicted RBP26.64■■□□□ 1.86
KDM1A-201ENST00000356634 WIZO95785 1651 aa26.57■■□□□ 1.84
KDM1A-201ENST00000356634 NACADO15069 1562 aa26.53■■□□□ 1.84
KDM1A-201ENST00000356634 UBTFP17480 764 aaKnown RBP26.49■■□□□ 1.83
KDM1A-201ENST00000356634 CEP162Q5TB80 1403 aa26.48■■□□□ 1.83
KDM1A-201ENST00000356634 MIER1Q8N108 512 aa26.47■■□□□ 1.83
KDM1A-201ENST00000356634 HNRNPUL2Q1KMD3 747 aaKnown RBP26.41■■□□□ 1.82
KDM1A-201ENST00000356634 WRNQ14191 1432 aaPredicted RBP eCLIP26.39■■□□□ 1.82
KDM1A-201ENST00000356634 ABCC8Q09428 1581 aa26.38■■□□□ 1.81
KDM1A-201ENST00000356634 CCDC88BA6NC98 1476 aa26.37■■□□□ 1.81
KDM1A-201ENST00000356634 SOGA1O94964 1423 aa26.3■■□□□ 1.8
KDM1A-201ENST00000356634 TNIKQ9UKE5 1360 aa26.26■■□□□ 1.79
KDM1A-201ENST00000356634 CSRNP3Q8WYN3 585 aa26.25■■□□□ 1.79
KDM1A-201ENST00000356634 BAZ1AQ9NRL2 1556 aaPredicted RBP26.25■■□□□ 1.79
KDM1A-201ENST00000356634 RANGAP1P46060 587 aaPredicted RBP26.2■■□□□ 1.78
KDM1A-201ENST00000356634 EIF4G1Q04637 1599 aaKnown RBP26.19■■□□□ 1.78
KDM1A-201ENST00000356634 RUSC2Q8N2Y8 1516 aa26.13■■□□□ 1.77
KDM1A-201ENST00000356634 APLP2Q06481 763 aa26.05■■□□□ 1.76
KDM1A-201ENST00000356634 GOLGA3Q08378 1498 aa26■■□□□ 1.75
KDM1A-201ENST00000356634 EEA1Q15075 1411 aa25.97■■□□□ 1.75
KDM1A-201ENST00000356634 TOP2AP11388 1531 aaKnown RBP25.97■■□□□ 1.75
KDM1A-201ENST00000356634 SMARCA2P51531 1590 aa25.9■■□□□ 1.74
KDM1A-201ENST00000356634 SMARCA4P51532 1647 aa25.89■■□□□ 1.74
KDM1A-201ENST00000356634 SUPT16HQ9Y5B9 1047 aaKnown RBP25.89■■□□□ 1.74
KDM1A-201ENST00000356634 CLIP1P30622 1438 aa25.86■■□□□ 1.73
KDM1A-201ENST00000356634 UNC13AQ9UPW8 1703 aa25.85■■□□□ 1.73
KDM1A-201ENST00000356634 CEP164Q9UPV0 1460 aa25.74■■□□□ 1.71
KDM1A-201ENST00000356634 VPS8Q8N3P4 1428 aa25.73■■□□□ 1.71
KDM1A-201ENST00000356634 CLSPNQ9HAW4 1339 aa25.7■■□□□ 1.7
KDM1A-201ENST00000356634 TSHZ2Q9NRE2 1034 aa25.67■■□□□ 1.7
KDM1A-201ENST00000356634 BICRAQ9NZM4 1560 aa25.64■■□□□ 1.7
KDM1A-201ENST00000356634 BCANQ96GW7 911 aa25.63■■□□□ 1.69
KDM1A-201ENST00000356634 DHX57Q6P158 1386 aaKnown RBP25.6■■□□□ 1.69
KDM1A-201ENST00000356634 RAPGEF2Q9Y4G8 1499 aa25.57■■□□□ 1.68
KDM1A-201ENST00000356634 ANP32EQ9BTT0 268 aa25.56■■□□□ 1.68
KDM1A-201ENST00000356634 ITGAEP38570 1179 aa25.55■■□□□ 1.68
KDM1A-201ENST00000356634 KIF21BO75037 1637 aa25.53■■□□□ 1.68
KDM1A-201ENST00000356634 KCNH8Q96L42 1107 aa25.53■■□□□ 1.68
KDM1A-201ENST00000356634 SYNJ1O43426 1573 aa25.51■■□□□ 1.67
KDM1A-201ENST00000356634 KANK4Q5T7N3 995 aaPredicted RBP25.46■■□□□ 1.67
KDM1A-201ENST00000356634 BAZ1BQ9UIG0 1483 aaKnown RBP25.42■■□□□ 1.66
KDM1A-201ENST00000356634 ATAD2BQ9ULI0 1458 aa25.42■■□□□ 1.66
KDM1A-201ENST00000356634 FKBP8Q14318 412 aa25.41■■□□□ 1.66
KDM1A-201ENST00000356634 DDX10Q13206 875 aaKnown RBP25.3■■□□□ 1.64
KDM1A-201ENST00000356634 BCL11AQ9H165 835 aa25.29■■□□□ 1.64
KDM1A-201ENST00000356634 NEFLP07196 543 aa25.26■■□□□ 1.63
KDM1A-201ENST00000356634 ARAP1Q96P48 1450 aa25.2■■□□□ 1.62
KDM1A-201ENST00000356634 CCNB3Q8WWL7 1395 aa25.19■■□□□ 1.62
KDM1A-201ENST00000356634 TRIM52Q96A61 297 aa25.19■■□□□ 1.62
KDM1A-201ENST00000356634 HIRIP3Q9BW71 556 aaPredicted RBP25.17■■□□□ 1.62
KDM1A-201ENST00000356634 RRBP1Q9P2E9 1410 aaKnown RBP25.14■■□□□ 1.62
KDM1A-201ENST00000356634 RBM19Q9Y4C8 960 aaKnown RBP25.14■■□□□ 1.62
KDM1A-201ENST00000356634 RAB3GAP2Q9H2M9 1393 aa25.12■■□□□ 1.61
KDM1A-201ENST00000356634 SIN3AQ96ST3 1273 aa25.12■■□□□ 1.61
KDM1A-201ENST00000356634 PEG3Q9GZU2 1588 aa25.03■■□□□ 1.6
KDM1A-201ENST00000356634 FAM50AQ14320 339 aaKnown RBP25.03■■□□□ 1.6
KDM1A-201ENST00000356634 ATP1B4Q9UN42 357 aaPredicted RBP25.02■■□□□ 1.6
KDM1A-201ENST00000356634 PRXQ9BXM0 1461 aa25.02■■□□□ 1.6
KDM1A-201ENST00000356634 ANP32CO43423 234 aa25.01■■□□□ 1.59
KDM1A-201ENST00000356634 P3H3Q8IVL6 736 aa25■■□□□ 1.59
KDM1A-201ENST00000356634 TOP2BQ02880 1626 aa25■■□□□ 1.59
KDM1A-201ENST00000356634 ERICH3Q5RHP9 1530 aa24.99■■□□□ 1.59
KDM1A-201ENST00000356634 CUX2O14529 1486 aa24.98■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms