Protein–RNA interactions for Protein: O75631

UPK3A, Uroplakin-3a, humanhuman

Predictions only

Length 287 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3AO75631 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC21.68■■□□□ 1.06
UPK3AO75631 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
UPK3AO75631 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
UPK3AO75631 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
UPK3AO75631 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC21.67■■□□□ 1.06
UPK3AO75631 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
UPK3AO75631 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC21.66■■□□□ 1.06
UPK3AO75631 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
UPK3AO75631 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
UPK3AO75631 RNF126P1-201ENST00000567452 1320 ntBASIC21.66■■□□□ 1.06
UPK3AO75631 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC21.66■■□□□ 1.06
UPK3AO75631 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC21.66■■□□□ 1.06
UPK3AO75631 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
UPK3AO75631 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
UPK3AO75631 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
UPK3AO75631 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
UPK3AO75631 SMPD5-203ENST00000639008 1464 ntBASIC21.65■■□□□ 1.06
UPK3AO75631 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
UPK3AO75631 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC21.65■■□□□ 1.06
UPK3AO75631 AC025884.2-201ENST00000553429 711 ntBASIC21.65■■□□□ 1.06
UPK3AO75631 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
UPK3AO75631 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
UPK3AO75631 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC21.65■■□□□ 1.06
UPK3AO75631 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
UPK3AO75631 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
UPK3AO75631 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC21.64■■□□□ 1.05
UPK3AO75631 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
UPK3AO75631 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC21.64■■□□□ 1.05
UPK3AO75631 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
UPK3AO75631 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC21.64■■□□□ 1.05
UPK3AO75631 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC21.64■■□□□ 1.05
UPK3AO75631 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
UPK3AO75631 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
UPK3AO75631 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
UPK3AO75631 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
UPK3AO75631 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC21.62■■□□□ 1.05
UPK3AO75631 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
UPK3AO75631 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
UPK3AO75631 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC21.62■■□□□ 1.05
UPK3AO75631 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
UPK3AO75631 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
UPK3AO75631 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC21.62■■□□□ 1.05
UPK3AO75631 REST-210ENST00000638187 1334 ntTSL 5 BASIC21.61■■□□□ 1.05
UPK3AO75631 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
UPK3AO75631 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
UPK3AO75631 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
UPK3AO75631 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
UPK3AO75631 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC21.61■■□□□ 1.05
UPK3AO75631 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC21.61■■□□□ 1.05
UPK3AO75631 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
UPK3AO75631 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
UPK3AO75631 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
UPK3AO75631 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC21.6■■□□□ 1.05
UPK3AO75631 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
UPK3AO75631 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
UPK3AO75631 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
UPK3AO75631 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
UPK3AO75631 RARRES2P2-201ENST00000394842 485 ntBASIC21.6■■□□□ 1.05
UPK3AO75631 BRD4-212ENST00000630599 726 ntTSL 2 BASIC21.6■■□□□ 1.05
UPK3AO75631 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
UPK3AO75631 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
UPK3AO75631 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
UPK3AO75631 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
UPK3AO75631 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC21.59■■□□□ 1.05
UPK3AO75631 PFN2-211ENST00000489155 636 ntTSL 4 BASIC21.59■■□□□ 1.05
UPK3AO75631 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC21.59■■□□□ 1.05
UPK3AO75631 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
UPK3AO75631 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
UPK3AO75631 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
UPK3AO75631 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC21.59■■□□□ 1.05
UPK3AO75631 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
UPK3AO75631 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
UPK3AO75631 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
UPK3AO75631 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC21.58■■□□□ 1.05
UPK3AO75631 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
UPK3AO75631 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC21.58■■□□□ 1.04
UPK3AO75631 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
UPK3AO75631 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
UPK3AO75631 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
UPK3AO75631 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC21.57■■□□□ 1.04
UPK3AO75631 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC21.57■■□□□ 1.04
UPK3AO75631 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC21.57■■□□□ 1.04
UPK3AO75631 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
UPK3AO75631 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
UPK3AO75631 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
UPK3AO75631 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
UPK3AO75631 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC21.57■■□□□ 1.04
UPK3AO75631 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
UPK3AO75631 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC21.57■■□□□ 1.04
UPK3AO75631 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
UPK3AO75631 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
UPK3AO75631 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC21.56■■□□□ 1.04
UPK3AO75631 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
UPK3AO75631 AC007029.1-201ENST00000604183 313 ntBASIC21.56■■□□□ 1.04
UPK3AO75631 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC21.56■■□□□ 1.04
UPK3AO75631 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC21.56■■□□□ 1.04
UPK3AO75631 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC21.56■■□□□ 1.04
UPK3AO75631 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
UPK3AO75631 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
UPK3AO75631 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms