Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CNTN3Q9P232 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC18.62■□□□□ 0.57
CNTN3Q9P232 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
CNTN3Q9P232 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
CNTN3Q9P232 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CNTN3Q9P232 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CNTN3Q9P232 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC18.61■□□□□ 0.57
CNTN3Q9P232 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CNTN3Q9P232 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CNTN3Q9P232 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
CNTN3Q9P232 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
CNTN3Q9P232 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CNTN3Q9P232 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
CNTN3Q9P232 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CNTN3Q9P232 CRYGEP-201ENST00000412192 528 ntBASIC18.61■□□□□ 0.57
CNTN3Q9P232 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC18.61■□□□□ 0.57
CNTN3Q9P232 PAWRP1-201ENST00000451083 565 ntBASIC18.61■□□□□ 0.57
CNTN3Q9P232 OR7E47P-204ENST00000575924 449 ntBASIC18.61■□□□□ 0.57
CNTN3Q9P232 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC18.61■□□□□ 0.57
CNTN3Q9P232 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CNTN3Q9P232 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC18.61■□□□□ 0.57
CNTN3Q9P232 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC18.61■□□□□ 0.57
CNTN3Q9P232 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.57
CNTN3Q9P232 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
CNTN3Q9P232 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CNTN3Q9P232 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CNTN3Q9P232 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CNTN3Q9P232 LINC00896-202ENST00000609602 2128 ntBASIC18.61■□□□□ 0.57
CNTN3Q9P232 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CNTN3Q9P232 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
CNTN3Q9P232 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
CNTN3Q9P232 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CNTN3Q9P232 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CNTN3Q9P232 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC18.6■□□□□ 0.57
CNTN3Q9P232 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC18.6■□□□□ 0.57
CNTN3Q9P232 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
CNTN3Q9P232 TPR-209ENST00000613151 2478 ntTSL 5 BASIC18.6■□□□□ 0.57
CNTN3Q9P232 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CNTN3Q9P232 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CNTN3Q9P232 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CNTN3Q9P232 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC18.6■□□□□ 0.57
CNTN3Q9P232 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC18.6■□□□□ 0.57
CNTN3Q9P232 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC18.6■□□□□ 0.57
CNTN3Q9P232 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CNTN3Q9P232 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CNTN3Q9P232 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CNTN3Q9P232 COX10-202ENST00000429152 875 ntTSL 2 BASIC18.6■□□□□ 0.57
CNTN3Q9P232 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC18.6■□□□□ 0.57
CNTN3Q9P232 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC18.6■□□□□ 0.57
CNTN3Q9P232 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC18.6■□□□□ 0.57
CNTN3Q9P232 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
CNTN3Q9P232 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CNTN3Q9P232 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CNTN3Q9P232 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CNTN3Q9P232 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CNTN3Q9P232 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
CNTN3Q9P232 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CNTN3Q9P232 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC18.6■□□□□ 0.57
CNTN3Q9P232 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
CNTN3Q9P232 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CNTN3Q9P232 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC18.6■□□□□ 0.57
CNTN3Q9P232 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC18.59■□□□□ 0.57
CNTN3Q9P232 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CNTN3Q9P232 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
CNTN3Q9P232 AC016396.2-201ENST00000562575 1417 ntBASIC18.59■□□□□ 0.57
CNTN3Q9P232 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC18.59■□□□□ 0.57
CNTN3Q9P232 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
CNTN3Q9P232 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC18.59■□□□□ 0.57
CNTN3Q9P232 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC18.59■□□□□ 0.57
CNTN3Q9P232 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
CNTN3Q9P232 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
CNTN3Q9P232 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CNTN3Q9P232 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CNTN3Q9P232 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
CNTN3Q9P232 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CNTN3Q9P232 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
CNTN3Q9P232 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
CNTN3Q9P232 IGLL3P-201ENST00000412472 434 ntBASIC18.59■□□□□ 0.57
CNTN3Q9P232 ATP6V0CP3-201ENST00000417255 467 ntBASIC18.59■□□□□ 0.57
CNTN3Q9P232 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC18.59■□□□□ 0.57
CNTN3Q9P232 RPP21-221ENST00000428040 594 ntTSL 2 BASIC18.59■□□□□ 0.57
CNTN3Q9P232 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CNTN3Q9P232 KRT18P2-201ENST00000447938 1258 ntBASIC18.59■□□□□ 0.57
CNTN3Q9P232 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC18.59■□□□□ 0.57
CNTN3Q9P232 AC040169.1-201ENST00000565382 521 ntBASIC18.59■□□□□ 0.57
CNTN3Q9P232 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC18.59■□□□□ 0.57
CNTN3Q9P232 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
CNTN3Q9P232 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC18.59■□□□□ 0.57
CNTN3Q9P232 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CNTN3Q9P232 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
CNTN3Q9P232 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CNTN3Q9P232 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CNTN3Q9P232 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
CNTN3Q9P232 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC18.59■□□□□ 0.57
CNTN3Q9P232 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CNTN3Q9P232 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC18.59■□□□□ 0.57
CNTN3Q9P232 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
CNTN3Q9P232 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
CNTN3Q9P232 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CNTN3Q9P232 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC18.58■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms