RNA–Protein interactions for RNA: ENST00000475551.5

CCM2-207, Transcript of CCM2 scaffold protein, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCM2, Length 2,471 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-207ENST00000475551 NISCHQ9Y2I1 1504 aa35.4■■■■□ 3.26
CCM2-207ENST00000475551 CCDC180Q9P1Z9 1646 aa31.09■■■□□ 2.57
CCM2-207ENST00000475551 ABCC9O60706 1549 aa29.96■■■□□ 2.39
CCM2-207ENST00000475551 SHROOM4Q9ULL8 1493 aa29.89■■■□□ 2.38
CCM2-207ENST00000475551 HRCP23327 699 aa29.86■■■□□ 2.37
CCM2-207ENST00000475551 SUPT5HO00267 1087 aaKnown RBP29.71■■■□□ 2.35
CCM2-207ENST00000475551 ZCCHC6Q5VYS8 1495 aaKnown RBP29.63■■■□□ 2.33
CCM2-207ENST00000475551 DCAF8L2P0C7V8 631 aa29.49■■■□□ 2.31
CCM2-207ENST00000475551 MYO15BQ96JP2 1530 aa29.43■■■□□ 2.3
CCM2-207ENST00000475551 CHIC1Q5VXU3 224 aa29.34■■■□□ 2.29
CCM2-207ENST00000475551 DCAF1Q9Y4B6 1507 aa29.22■■■□□ 2.27
CCM2-207ENST00000475551 PCGF6Q9BYE7 350 aa29.21■■■□□ 2.27
CCM2-207ENST00000475551 NACADO15069 1562 aa29.09■■■□□ 2.25
CCM2-207ENST00000475551 PPARGC1BQ86YN6 1023 aaKnown RBP29.01■■■□□ 2.23
CCM2-207ENST00000475551 RB1CC1Q8TDY2 1594 aa28.98■■■□□ 2.23
CCM2-207ENST00000475551 SCRIBQ14160 1630 aa28.58■■■□□ 2.17
CCM2-207ENST00000475551 TRIM26Q12899 539 aaPredicted RBP28.54■■■□□ 2.16
CCM2-207ENST00000475551 PELP1Q8IZL8 1130 aaKnown RBP28.53■■■□□ 2.16
CCM2-207ENST00000475551 LOC105371045A0A1W2PR82 267 aa28.47■■■□□ 2.15
CCM2-207ENST00000475551 UNC13AQ9UPW8 1703 aa28.41■■■□□ 2.14
CCM2-207ENST00000475551 ZEB1P37275 1124 aaPredicted RBP28.32■■■□□ 2.12
CCM2-207ENST00000475551 PABPN1Q86U42 306 aaKnown RBP eCLIP28.16■■■□□ 2.1
CCM2-207ENST00000475551 BICRAQ9NZM4 1560 aa28.14■■■□□ 2.1
CCM2-207ENST00000475551 SCAF1Q9H7N4 1312 aaKnown RBP27.99■■■□□ 2.07
CCM2-207ENST00000475551 TRIM41Q8WV44 630 aa27.65■■■□□ 2.02
CCM2-207ENST00000475551 RSF1Q96T23 1441 aaPredicted RBP27.6■■■□□ 2.01
CCM2-207ENST00000475551 CECR2Q9BXF3 1484 aa27.59■■■□□ 2.01
CCM2-207ENST00000475551 ACIN1Q9UKV3 1341 aaKnown RBP27.48■■□□□ 1.99
CCM2-207ENST00000475551 MYT1Q01538 1121 aa27.4■■□□□ 1.98
CCM2-207ENST00000475551 FAM9AQ8IZU1 332 aaPredicted RBP27.4■■□□□ 1.98
CCM2-207ENST00000475551 BAZ1AQ9NRL2 1556 aaPredicted RBP27.37■■□□□ 1.97
CCM2-207ENST00000475551 MROH2BQ7Z745 1585 aa27.36■■□□□ 1.97
CCM2-207ENST00000475551 EIF4G1Q04637 1599 aaKnown RBP27.34■■□□□ 1.97
CCM2-207ENST00000475551 SMARCA4P51532 1647 aa27.34■■□□□ 1.97
CCM2-207ENST00000475551 NEUROD1Q13562 356 aa27.32■■□□□ 1.96
CCM2-207ENST00000475551 CENPBP07199 599 aaPredicted RBP27.19■■□□□ 1.94
CCM2-207ENST00000475551 CCER1Q8TC90 406 aaPredicted RBP27.16■■□□□ 1.94
CCM2-207ENST00000475551 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.16■■□□□ 1.94
CCM2-207ENST00000475551 GTF3C3Q9Y5Q9 886 aa27.14■■□□□ 1.93
CCM2-207ENST00000475551 DIEXFQ68CQ4 756 aaKnown RBP27.12■■□□□ 1.93
CCM2-207ENST00000475551 WIZO95785 1651 aa27.11■■□□□ 1.93
CCM2-207ENST00000475551 EHMT2Q96KQ7 1210 aa27.1■■□□□ 1.93
CCM2-207ENST00000475551 CC2D2AQ9P2K1 1620 aa27.08■■□□□ 1.93
CCM2-207ENST00000475551 ATAD2BQ9ULI0 1458 aa27.02■■□□□ 1.92
CCM2-207ENST00000475551 PEG3Q9GZU2 1588 aa26.99■■□□□ 1.91
CCM2-207ENST00000475551 SMARCA2P51531 1590 aa26.97■■□□□ 1.91
CCM2-207ENST00000475551 DNAJC5BQ9UF47 199 aa26.93■■□□□ 1.9
CCM2-207ENST00000475551 WRNQ14191 1432 aaPredicted RBP eCLIP26.87■■□□□ 1.89
CCM2-207ENST00000475551 NCAPD3P42695 1498 aa26.86■■□□□ 1.89
CCM2-207ENST00000475551 BAZ1BQ9UIG0 1483 aaKnown RBP26.84■■□□□ 1.89
CCM2-207ENST00000475551 TOP2AP11388 1531 aaKnown RBP26.79■■□□□ 1.88
CCM2-207ENST00000475551 HMGXB3Q12766 1538 aa26.77■■□□□ 1.88
CCM2-207ENST00000475551 ZNF316A6NFI3 1004 aaPredicted RBP26.73■■□□□ 1.87
CCM2-207ENST00000475551 CEP162Q5TB80 1403 aa26.61■■□□□ 1.85
CCM2-207ENST00000475551 TNIKQ9UKE5 1360 aa26.55■■□□□ 1.84
CCM2-207ENST00000475551 CCDC88BA6NC98 1476 aa26.52■■□□□ 1.84
CCM2-207ENST00000475551 TTBK1Q5TCY1 1321 aaPredicted RBP26.46■■□□□ 1.83
CCM2-207ENST00000475551 YTHDC1Q96MU7 727 aaKnown RBP26.44■■□□□ 1.82
CCM2-207ENST00000475551 MIER1Q8N108 512 aa26.41■■□□□ 1.82
CCM2-207ENST00000475551 EEA1Q15075 1411 aa26.4■■□□□ 1.82
CCM2-207ENST00000475551 ABCC8Q09428 1581 aa26.4■■□□□ 1.82
CCM2-207ENST00000475551 SOGA1O94964 1423 aa26.33■■□□□ 1.81
CCM2-207ENST00000475551 CSRNP3Q8WYN3 585 aa26.28■■□□□ 1.8
CCM2-207ENST00000475551 GOLGA3Q08378 1498 aa26.23■■□□□ 1.79
CCM2-207ENST00000475551 UBTFP17480 764 aaKnown RBP26.21■■□□□ 1.79
CCM2-207ENST00000475551 CLSPNQ9HAW4 1339 aa26.2■■□□□ 1.79
CCM2-207ENST00000475551 RUSC2Q8N2Y8 1516 aa26.15■■□□□ 1.78
CCM2-207ENST00000475551 CADPSQ9ULU8 1353 aa26.14■■□□□ 1.78
CCM2-207ENST00000475551 NESP48681 1621 aa26.14■■□□□ 1.78
CCM2-207ENST00000475551 CFTRP13569 1480 aa26.12■■□□□ 1.77
CCM2-207ENST00000475551 HNRNPUL2Q1KMD3 747 aaKnown RBP26.09■■□□□ 1.77
CCM2-207ENST00000475551 LAMC3Q9Y6N6 1575 aa26.04■■□□□ 1.76
CCM2-207ENST00000475551 CEP164Q9UPV0 1460 aa26■■□□□ 1.75
CCM2-207ENST00000475551 KIF21BO75037 1637 aa25.98■■□□□ 1.75
CCM2-207ENST00000475551 SUPT16HQ9Y5B9 1047 aaKnown RBP25.97■■□□□ 1.75
CCM2-207ENST00000475551 VPS8Q8N3P4 1428 aa25.96■■□□□ 1.75
CCM2-207ENST00000475551 PRDM2Q13029 1718 aa25.94■■□□□ 1.74
CCM2-207ENST00000475551 CLIP1P30622 1438 aa25.94■■□□□ 1.74
CCM2-207ENST00000475551 FANCD2Q9BXW9 1451 aa25.87■■□□□ 1.73
CCM2-207ENST00000475551 PDS5BQ9NTI5 1447 aa25.85■■□□□ 1.73
CCM2-207ENST00000475551 APLP2Q06481 763 aa25.82■■□□□ 1.72
CCM2-207ENST00000475551 KIF21AQ7Z4S6 1674 aa25.8■■□□□ 1.72
CCM2-207ENST00000475551 DHX57Q6P158 1386 aaKnown RBP25.79■■□□□ 1.72
CCM2-207ENST00000475551 TSHZ2Q9NRE2 1034 aa25.78■■□□□ 1.72
CCM2-207ENST00000475551 ANP32EQ9BTT0 268 aa25.74■■□□□ 1.71
CCM2-207ENST00000475551 ERCC6Q03468 1493 aa25.73■■□□□ 1.71
CCM2-207ENST00000475551 SYNJ1O43426 1573 aa25.72■■□□□ 1.71
CCM2-207ENST00000475551 RAPGEF2Q9Y4G8 1499 aa25.66■■□□□ 1.7
CCM2-207ENST00000475551 CUX1P39880 1505 aa25.61■■□□□ 1.69
CCM2-207ENST00000475551 URB2Q14146 1524 aaKnown RBP25.59■■□□□ 1.69
CCM2-207ENST00000475551 MRC2Q9UBG0 1479 aa25.56■■□□□ 1.68
CCM2-207ENST00000475551 CUX2O14529 1486 aa25.53■■□□□ 1.68
CCM2-207ENST00000475551 TOPBP1Q92547 1522 aa25.53■■□□□ 1.68
CCM2-207ENST00000475551 TOP2BQ02880 1626 aa25.53■■□□□ 1.68
CCM2-207ENST00000475551 DNMBPQ6XZF7 1577 aa25.52■■□□□ 1.68
CCM2-207ENST00000475551 THOC2Q8NI27 1593 aaKnown RBP25.51■■□□□ 1.67
CCM2-207ENST00000475551 BIVM-ERCC5R4GMW8 1640 aa25.5■■□□□ 1.67
CCM2-207ENST00000475551 RRBP1Q9P2E9 1410 aaKnown RBP25.5■■□□□ 1.67
CCM2-207ENST00000475551 WDR62O43379 1518 aa25.45■■□□□ 1.66
CCM2-207ENST00000475551 ARAP1Q96P48 1450 aa25.44■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms