RNA–Protein interactions for RNA: ENST00000615843.4

SPAST-203, Transcript of spastin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene SPAST, Length 5,212 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPAST-203ENST00000615843 DCAF8L2P0C7V8 631 aa31.35■■■□□ 2.61
SPAST-203ENST00000615843 SUPT5HO00267 1087 aaKnown RBP30.77■■■□□ 2.52
SPAST-203ENST00000615843 NISCHQ9Y2I1 1504 aa30.22■■■□□ 2.43
SPAST-203ENST00000615843 PELP1Q8IZL8 1130 aaKnown RBP30.11■■■□□ 2.41
SPAST-203ENST00000615843 SHROOM4Q9ULL8 1493 aa29.99■■■□□ 2.39
SPAST-203ENST00000615843 EHMT2Q96KQ7 1210 aa29.68■■■□□ 2.34
SPAST-203ENST00000615843 PCGF6Q9BYE7 350 aa29.65■■■□□ 2.34
SPAST-203ENST00000615843 CENPBP07199 599 aaPredicted RBP29.3■■■□□ 2.28
SPAST-203ENST00000615843 MYT1Q01538 1121 aa29.2■■■□□ 2.27
SPAST-203ENST00000615843 ZEB1P37275 1124 aaPredicted RBP29.19■■■□□ 2.26
SPAST-203ENST00000615843 APLP2Q06481 763 aa29.05■■■□□ 2.24
SPAST-203ENST00000615843 FAM9AQ8IZU1 332 aaPredicted RBP28.99■■■□□ 2.23
SPAST-203ENST00000615843 ERICH6Q7L0X2 663 aa28.89■■■□□ 2.22
SPAST-203ENST00000615843 TTBK1Q5TCY1 1321 aaPredicted RBP28.85■■■□□ 2.21
SPAST-203ENST00000615843 CCER1Q8TC90 406 aaPredicted RBP28.8■■■□□ 2.2
SPAST-203ENST00000615843 HRCP23327 699 aa28.6■■■□□ 2.17
SPAST-203ENST00000615843 YTHDC1Q96MU7 727 aaKnown RBP28.5■■■□□ 2.15
SPAST-203ENST00000615843 TRIM41Q8WV44 630 aa28.43■■■□□ 2.14
SPAST-203ENST00000615843 NEFLP07196 543 aa28.33■■■□□ 2.13
SPAST-203ENST00000615843 TRIM26Q12899 539 aaPredicted RBP28.28■■■□□ 2.12
SPAST-203ENST00000615843 RANGAP1P46060 587 aaPredicted RBP28.1■■■□□ 2.09
SPAST-203ENST00000615843 PPARGC1BQ86YN6 1023 aaKnown RBP27.98■■■□□ 2.07
SPAST-203ENST00000615843 UBTFP17480 764 aaKnown RBP27.96■■■□□ 2.07
SPAST-203ENST00000615843 ATP1B4Q9UN42 357 aaPredicted RBP27.7■■■□□ 2.02
SPAST-203ENST00000615843 LOC105371045A0A1W2PR82 267 aa27.69■■■□□ 2.02
SPAST-203ENST00000615843 CHIC1Q5VXU3 224 aa27.68■■■□□ 2.02
SPAST-203ENST00000615843 DIEXFQ68CQ4 756 aaKnown RBP27.52■■■□□ 2
SPAST-203ENST00000615843 DAXXQ9UER7 740 aaPredicted RBP27.37■■□□□ 1.97
SPAST-203ENST00000615843 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.35■■□□□ 1.97
SPAST-203ENST00000615843 GTF3C3Q9Y5Q9 886 aa27.34■■□□□ 1.97
SPAST-203ENST00000615843 HNRNPUL2Q1KMD3 747 aaKnown RBP27.31■■□□□ 1.96
SPAST-203ENST00000615843 ITGAEP38570 1179 aa27.2■■□□□ 1.94
SPAST-203ENST00000615843 RTL5Q5HYW3 569 aaPredicted RBP27.16■■□□□ 1.94
SPAST-203ENST00000615843 POLR3GLQ9BT43 218 aa27.01■■□□□ 1.91
SPAST-203ENST00000615843 ACIN1Q9UKV3 1341 aaKnown RBP27■■□□□ 1.91
SPAST-203ENST00000615843 BCANQ96GW7 911 aa26.93■■□□□ 1.9
SPAST-203ENST00000615843 CNGB1Q14028 1251 aaPredicted RBP26.85■■□□□ 1.89
SPAST-203ENST00000615843 ZNF316A6NFI3 1004 aaPredicted RBP26.81■■□□□ 1.88
SPAST-203ENST00000615843 CDK11AQ9UQ88 783 aaPredicted RBP26.71■■□□□ 1.87
SPAST-203ENST00000615843 CLSPNQ9HAW4 1339 aa26.61■■□□□ 1.85
SPAST-203ENST00000615843 ANP32CO43423 234 aa26.54■■□□□ 1.84
SPAST-203ENST00000615843 NEUROD1Q13562 356 aa26.48■■□□□ 1.83
SPAST-203ENST00000615843 FAM50AQ14320 339 aaKnown RBP26.43■■□□□ 1.82
SPAST-203ENST00000615843 SCAF1Q9H7N4 1312 aaKnown RBP26.37■■□□□ 1.81
SPAST-203ENST00000615843 ANP32AP39687 249 aaKnown RBP26.26■■□□□ 1.79
SPAST-203ENST00000615843 TRIM52Q96A61 297 aa26.23■■□□□ 1.79
SPAST-203ENST00000615843 DCAF1Q9Y4B6 1507 aa26.22■■□□□ 1.79
SPAST-203ENST00000615843 FKBP8Q14318 412 aa26.2■■□□□ 1.79
SPAST-203ENST00000615843 MYT1LQ9UL68 1186 aa26.2■■□□□ 1.78
SPAST-203ENST00000615843 SLC4A1APQ9BWU0 796 aaKnown RBP26.14■■□□□ 1.78
SPAST-203ENST00000615843 EIF5BO60841 1220 aaKnown RBP26.08■■□□□ 1.76
SPAST-203ENST00000615843 NPM2Q86SE8 214 aaKnown RBP26.02■■□□□ 1.76
SPAST-203ENST00000615843 ZNF326Q5BKZ1 582 aaKnown RBP25.99■■□□□ 1.75
SPAST-203ENST00000615843 CSRNP3Q8WYN3 585 aa25.85■■□□□ 1.73
SPAST-203ENST00000615843 HNRNPUQ00839 825 aaKnown RBP eCLIP25.84■■□□□ 1.73
SPAST-203ENST00000615843 CANXP27824 592 aaKnown RBP25.83■■□□□ 1.73
SPAST-203ENST00000615843 MIER1Q8N108 512 aa25.82■■□□□ 1.72
SPAST-203ENST00000615843 NBR1Q14596 966 aa25.8■■□□□ 1.72
SPAST-203ENST00000615843 DDX10Q13206 875 aaKnown RBP25.79■■□□□ 1.72
SPAST-203ENST00000615843 ZBTB47Q9UFB7 747 aaPredicted RBP25.79■■□□□ 1.72
SPAST-203ENST00000615843 GLIPR1L2Q4G1C9 344 aa25.75■■□□□ 1.71
SPAST-203ENST00000615843 ANP32EQ9BTT0 268 aa25.7■■□□□ 1.7
SPAST-203ENST00000615843 FAM9BQ8IZU0 186 aa25.63■■□□□ 1.69
SPAST-203ENST00000615843 TONSLQ96HA7 1378 aa25.63■■□□□ 1.69
SPAST-203ENST00000615843 CCDC136Q96JN2 1154 aa25.62■■□□□ 1.69
SPAST-203ENST00000615843 ANP32BQ92688 251 aaKnown RBP25.6■■□□□ 1.69
SPAST-203ENST00000615843 BCL11AQ9H165 835 aa25.57■■□□□ 1.68
SPAST-203ENST00000615843 P3H3Q8IVL6 736 aa25.5■■□□□ 1.67
SPAST-203ENST00000615843 MYO15BQ96JP2 1530 aa25.5■■□□□ 1.67
SPAST-203ENST00000615843 IRX6P78412 446 aaPredicted RBP25.5■■□□□ 1.67
SPAST-203ENST00000615843 UPF2Q9HAU5 1272 aaKnown RBP25.49■■□□□ 1.67
SPAST-203ENST00000615843 HSP90AA1P07900 732 aaKnown RBP25.44■■□□□ 1.66
SPAST-203ENST00000615843 PABPN1Q86U42 306 aaKnown RBP eCLIP25.42■■□□□ 1.66
SPAST-203ENST00000615843 MRS2Q9HD23 443 aa25.38■■□□□ 1.65
SPAST-203ENST00000615843 CCDC180Q9P1Z9 1646 aa25.37■■□□□ 1.65
SPAST-203ENST00000615843 NEFMP07197 916 aa25.37■■□□□ 1.65
SPAST-203ENST00000615843 SALL2Q9Y467 1007 aaPredicted RBP25.37■■□□□ 1.65
SPAST-203ENST00000615843 ARXQ96QS3 562 aa25.34■■□□□ 1.65
SPAST-203ENST00000615843 TMC1Q8TDI8 760 aa25.33■■□□□ 1.65
SPAST-203ENST00000615843 ARID3CA6NKF2 412 aa25.27■■□□□ 1.64
SPAST-203ENST00000615843 ABCC9O60706 1549 aa25.26■■□□□ 1.63
SPAST-203ENST00000615843 GOLGA6L2Q8N9W4 650 aaPredicted RBP25.24■■□□□ 1.63
SPAST-203ENST00000615843 HIRIP3Q9BW71 556 aaPredicted RBP25.24■■□□□ 1.63
SPAST-203ENST00000615843 SUPT16HQ9Y5B9 1047 aaKnown RBP25.23■■□□□ 1.63
SPAST-203ENST00000615843 DDRGK1Q96HY6 314 aa25.2■■□□□ 1.62
SPAST-203ENST00000615843 ZNF777Q9ULD5 760 aaPredicted RBP25.19■■□□□ 1.62
SPAST-203ENST00000615843 SLC24A1O60721 1099 aa25.17■■□□□ 1.62
SPAST-203ENST00000615843 ZCCHC6Q5VYS8 1495 aaKnown RBP25.12■■□□□ 1.61
SPAST-203ENST00000615843 PPM1GO15355 546 aaPredicted RBP25.06■■□□□ 1.6
SPAST-203ENST00000615843 EIF4G2P78344 907 aaKnown RBP eCLIP25.06■■□□□ 1.6
SPAST-203ENST00000615843 CLIP1P30622 1438 aa25.05■■□□□ 1.6
SPAST-203ENST00000615843 WDR43Q15061 677 aaKnown RBP eCLIP25.04■■□□□ 1.6
SPAST-203ENST00000615843 RTN4Q9NQC3 1192 aaKnown RBP25.04■■□□□ 1.6
SPAST-203ENST00000615843 CHIC2Q9UKJ5 165 aa25.03■■□□□ 1.6
SPAST-203ENST00000615843 NOP58Q9Y2X3 529 aaKnown RBP25.03■■□□□ 1.6
SPAST-203ENST00000615843 BECN1Q14457 450 aa25.03■■□□□ 1.6
SPAST-203ENST00000615843 FBLN2P98095 1184 aa25.01■■□□□ 1.59
SPAST-203ENST00000615843 PPP4R2Q9NY27 417 aa25.01■■□□□ 1.59
SPAST-203ENST00000615843 TRIM44Q96DX7 344 aaPredicted RBP25■■□□□ 1.59
SPAST-203ENST00000615843 ERICH6BQ5W0A0 696 aa24.99■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms