RNA–Protein interactions for RNA: ENST00000308161.8

HMGCLL1-202, Transcript of 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1, humanhuman

TSL 2 BASIC

Gene HMGCLL1, Length 1,314 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCLL1-202ENST00000308161 NISCHQ9Y2I1 1504 aa41.87■■■■■ 4.29
HMGCLL1-202ENST00000308161 CCDC180Q9P1Z9 1646 aa37.34■■■■□ 3.57
HMGCLL1-202ENST00000308161 ABCC9O60706 1549 aa37.06■■■■□ 3.52
HMGCLL1-202ENST00000308161 RB1CC1Q8TDY2 1594 aa35.38■■■■□ 3.25
HMGCLL1-202ENST00000308161 DCAF8L2P0C7V8 631 aa35.34■■■■□ 3.25
HMGCLL1-202ENST00000308161 NACADO15069 1562 aa35.22■■■■□ 3.23
HMGCLL1-202ENST00000308161 MYO15BQ96JP2 1530 aa34.8■■■■□ 3.16
HMGCLL1-202ENST00000308161 ZCCHC6Q5VYS8 1495 aaKnown RBP34.79■■■■□ 3.16
HMGCLL1-202ENST00000308161 PABPN1Q86U42 306 aaKnown RBP eCLIP34.6■■■■□ 3.13
HMGCLL1-202ENST00000308161 UNC13AQ9UPW8 1703 aa34.57■■■■□ 3.12
HMGCLL1-202ENST00000308161 DCAF1Q9Y4B6 1507 aa34.54■■■■□ 3.12
HMGCLL1-202ENST00000308161 DNAJC5BQ9UF47 199 aa34.33■■■■□ 3.09
HMGCLL1-202ENST00000308161 BICRAQ9NZM4 1560 aa34.31■■■■□ 3.08
HMGCLL1-202ENST00000308161 SCRIBQ14160 1630 aa34.18■■■■□ 3.06
HMGCLL1-202ENST00000308161 SHROOM4Q9ULL8 1493 aa33.84■■■■□ 3.01
HMGCLL1-202ENST00000308161 EIF4G1Q04637 1599 aaKnown RBP33.47■■■□□ 2.95
HMGCLL1-202ENST00000308161 CC2D2AQ9P2K1 1620 aa33.45■■■□□ 2.94
HMGCLL1-202ENST00000308161 CECR2Q9BXF3 1484 aa33.3■■■□□ 2.92
HMGCLL1-202ENST00000308161 SMARCA4P51532 1647 aa32.58■■■□□ 2.81
HMGCLL1-202ENST00000308161 NCAPD3P42695 1498 aa32.5■■■□□ 2.79
HMGCLL1-202ENST00000308161 ATAD2BQ9ULI0 1458 aa32.5■■■□□ 2.79
HMGCLL1-202ENST00000308161 BAZ1AQ9NRL2 1556 aaPredicted RBP32.48■■■□□ 2.79
HMGCLL1-202ENST00000308161 SMARCA2P51531 1590 aa32.43■■■□□ 2.78
HMGCLL1-202ENST00000308161 HMGXB3Q12766 1538 aa32.3■■■□□ 2.76
HMGCLL1-202ENST00000308161 MROH2BQ7Z745 1585 aa32.3■■■□□ 2.76
HMGCLL1-202ENST00000308161 BAZ1BQ9UIG0 1483 aaKnown RBP32.26■■■□□ 2.75
HMGCLL1-202ENST00000308161 PEG3Q9GZU2 1588 aa32.19■■■□□ 2.74
HMGCLL1-202ENST00000308161 ERCC6Q03468 1493 aa31.98■■■□□ 2.71
HMGCLL1-202ENST00000308161 WIZO95785 1651 aa31.94■■■□□ 2.7
HMGCLL1-202ENST00000308161 NESP48681 1621 aa31.94■■■□□ 2.7
HMGCLL1-202ENST00000308161 RSF1Q96T23 1441 aaPredicted RBP31.77■■■□□ 2.68
HMGCLL1-202ENST00000308161 LAMC3Q9Y6N6 1575 aa31.72■■■□□ 2.67
HMGCLL1-202ENST00000308161 CUX2O14529 1486 aa31.67■■■□□ 2.66
HMGCLL1-202ENST00000308161 CADPSQ9ULU8 1353 aa31.57■■■□□ 2.64
HMGCLL1-202ENST00000308161 PDS5BQ9NTI5 1447 aa31.55■■■□□ 2.64
HMGCLL1-202ENST00000308161 TOP2AP11388 1531 aaKnown RBP31.55■■■□□ 2.64
HMGCLL1-202ENST00000308161 KIF21AQ7Z4S6 1674 aa31.52■■■□□ 2.64
HMGCLL1-202ENST00000308161 THOC2Q8NI27 1593 aaKnown RBP31.48■■■□□ 2.63
HMGCLL1-202ENST00000308161 CFTRP13569 1480 aa31.28■■■□□ 2.6
HMGCLL1-202ENST00000308161 MRC2Q9UBG0 1479 aa31.27■■■□□ 2.6
HMGCLL1-202ENST00000308161 CEP164Q9UPV0 1460 aa31.25■■■□□ 2.59
HMGCLL1-202ENST00000308161 FANCD2Q9BXW9 1451 aa31.24■■■□□ 2.59
HMGCLL1-202ENST00000308161 CCDC88BA6NC98 1476 aa31.19■■■□□ 2.58
HMGCLL1-202ENST00000308161 DNAJC5Q9H3Z4 198 aa31.18■■■□□ 2.58
HMGCLL1-202ENST00000308161 WDR62O43379 1518 aa31.14■■■□□ 2.58
HMGCLL1-202ENST00000308161 PRDM2Q13029 1718 aa30.99■■■□□ 2.55
HMGCLL1-202ENST00000308161 URB2Q14146 1524 aaKnown RBP30.94■■■□□ 2.54
HMGCLL1-202ENST00000308161 SUPT5HO00267 1087 aaKnown RBP30.84■■■□□ 2.53
HMGCLL1-202ENST00000308161 TOPBP1Q92547 1522 aa30.68■■■□□ 2.5
HMGCLL1-202ENST00000308161 ABCC8Q09428 1581 aa30.61■■■□□ 2.49
HMGCLL1-202ENST00000308161 DNMBPQ6XZF7 1577 aa30.61■■■□□ 2.49
HMGCLL1-202ENST00000308161 IFT140Q96RY7 1462 aa30.58■■■□□ 2.49
HMGCLL1-202ENST00000308161 ZNF608Q9ULD9 1512 aaPredicted RBP30.52■■■□□ 2.48
HMGCLL1-202ENST00000308161 POLA1P09884 1462 aaPredicted RBP30.4■■■□□ 2.46
HMGCLL1-202ENST00000308161 EIF4G3O43432 1585 aaKnown RBP30.36■■■□□ 2.45
HMGCLL1-202ENST00000308161 TARBP1Q13395 1621 aaKnown RBP30.35■■■□□ 2.45
HMGCLL1-202ENST00000308161 OSCARQ8IYS5 282 aa30.35■■■□□ 2.45
HMGCLL1-202ENST00000308161 CUX1P39880 1505 aa30.32■■■□□ 2.44
HMGCLL1-202ENST00000308161 RAD54L2Q9Y4B4 1467 aa30.32■■■□□ 2.44
HMGCLL1-202ENST00000308161 AQRO60306 1485 aaKnown RBP eCLIP30.3■■■□□ 2.44
HMGCLL1-202ENST00000308161 FGD5Q6ZNL6 1462 aa30.3■■■□□ 2.44
HMGCLL1-202ENST00000308161 SOGA1O94964 1423 aa30.29■■■□□ 2.44
HMGCLL1-202ENST00000308161 TDRD9Q8NDG6 1382 aaKnown RBP30.2■■■□□ 2.43
HMGCLL1-202ENST00000308161 TRIM41Q8WV44 630 aa30.15■■■□□ 2.42
HMGCLL1-202ENST00000308161 FBLN2P98095 1184 aa30.11■■■□□ 2.41
HMGCLL1-202ENST00000308161 CHD1O14646 1710 aa30.06■■■□□ 2.4
HMGCLL1-202ENST00000308161 WDR97A6NE52 1622 aa30.03■■■□□ 2.4
HMGCLL1-202ENST00000308161 SNAPC4Q5SXM2 1469 aa30.01■■■□□ 2.39
HMGCLL1-202ENST00000308161 WRNQ14191 1432 aaPredicted RBP eCLIP30■■■□□ 2.39
HMGCLL1-202ENST00000308161 GRIN2BQ13224 1484 aa29.96■■■□□ 2.39
HMGCLL1-202ENST00000308161 SYNJ1O43426 1573 aa29.94■■■□□ 2.38
HMGCLL1-202ENST00000308161 TOP2BQ02880 1626 aa29.93■■■□□ 2.38
HMGCLL1-202ENST00000308161 ABCA10Q8WWZ4 1543 aa29.93■■■□□ 2.38
HMGCLL1-202ENST00000308161 GAPVD1Q14C86 1478 aa29.93■■■□□ 2.38
HMGCLL1-202ENST00000308161 BIVM-ERCC5R4GMW8 1640 aa29.91■■■□□ 2.38
HMGCLL1-202ENST00000308161 RIMBP3CA6NJZ7 1639 aa29.9■■■□□ 2.38
HMGCLL1-202ENST00000308161 RIMBP3BA6NNM3 1639 aa29.9■■■□□ 2.38
HMGCLL1-202ENST00000308161 RIMBP3Q9UFD9 1639 aa29.9■■■□□ 2.38
HMGCLL1-202ENST00000308161 CHMP7Q8WUX9 453 aaPredicted RBP29.9■■■□□ 2.38
HMGCLL1-202ENST00000308161 MAGI1Q96QZ7 1491 aaPredicted RBP29.89■■■□□ 2.38
HMGCLL1-202ENST00000308161 PBRM1Q86U86 1689 aa29.88■■■□□ 2.37
HMGCLL1-202ENST00000308161 ARHGEF11O15085 1522 aa29.86■■■□□ 2.37
HMGCLL1-202ENST00000308161 ABCA5Q8WWZ7 1642 aa29.85■■■□□ 2.37
HMGCLL1-202ENST00000308161 SYNJ2O15056 1496 aa29.81■■■□□ 2.36
HMGCLL1-202ENST00000308161 CLASP1Q7Z460 1538 aa29.68■■■□□ 2.34
HMGCLL1-202ENST00000308161 CYB5RLQ6IPT4 315 aa29.67■■■□□ 2.34
HMGCLL1-202ENST00000308161 ADAMTS12P58397 1594 aa29.62■■■□□ 2.33
HMGCLL1-202ENST00000308161 ARAP1Q96P48 1450 aa29.6■■■□□ 2.33
HMGCLL1-202ENST00000308161 GRIN2AQ12879 1464 aa29.58■■■□□ 2.33
HMGCLL1-202ENST00000308161 ERICH3Q5RHP9 1530 aa29.56■■■□□ 2.32
HMGCLL1-202ENST00000308161 FHAD1B1AJZ9 1412 aa29.55■■■□□ 2.32
HMGCLL1-202ENST00000308161 CEP170Q5SW79 1584 aa29.45■■■□□ 2.31
HMGCLL1-202ENST00000308161 NUP160Q12769 1436 aa29.43■■■□□ 2.3
HMGCLL1-202ENST00000308161 KIF27Q86VH2 1401 aa29.39■■■□□ 2.3
HMGCLL1-202ENST00000308161 ERCC6L2Q5T890 1561 aa29.31■■■□□ 2.28
HMGCLL1-202ENST00000308161 IGF1RP08069 1367 aa29.29■■■□□ 2.28
HMGCLL1-202ENST00000308161 TRHP20396 242 aaPredicted RBP29.25■■■□□ 2.27
HMGCLL1-202ENST00000308161 SHROOM2Q13796 1616 aa29.23■■■□□ 2.27
HMGCLL1-202ENST00000308161 CUL7Q14999 1698 aa29.23■■■□□ 2.27
HMGCLL1-202ENST00000308161 RUSC2Q8N2Y8 1516 aa29.19■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms