RNA–Protein interactions for RNA: ENST00000358781.6

FAM3D-201, Transcript of family with sequence similarity 3 member D, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene FAM3D, Length 1,319 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FAM3D-201ENST00000358781 NISCHQ9Y2I1 1504 aa41.59■■■■■ 4.25
FAM3D-201ENST00000358781 CCDC180Q9P1Z9 1646 aa37.03■■■■□ 3.52
FAM3D-201ENST00000358781 ABCC9O60706 1549 aa36.31■■■■□ 3.4
FAM3D-201ENST00000358781 RB1CC1Q8TDY2 1594 aa34.89■■■■□ 3.18
FAM3D-201ENST00000358781 NACADO15069 1562 aa34.83■■■■□ 3.17
FAM3D-201ENST00000358781 DCAF8L2P0C7V8 631 aa34.76■■■■□ 3.15
FAM3D-201ENST00000358781 ZCCHC6Q5VYS8 1495 aaKnown RBP34.62■■■■□ 3.13
FAM3D-201ENST00000358781 MYO15BQ96JP2 1530 aa34.59■■■■□ 3.13
FAM3D-201ENST00000358781 DCAF1Q9Y4B6 1507 aa34.41■■■■□ 3.1
FAM3D-201ENST00000358781 UNC13AQ9UPW8 1703 aa34.12■■■■□ 3.05
FAM3D-201ENST00000358781 PABPN1Q86U42 306 aaKnown RBP eCLIP33.91■■■■□ 3.02
FAM3D-201ENST00000358781 BICRAQ9NZM4 1560 aa33.85■■■■□ 3.01
FAM3D-201ENST00000358781 SCRIBQ14160 1630 aa33.76■■■■□ 3
FAM3D-201ENST00000358781 SHROOM4Q9ULL8 1493 aa33.49■■■□□ 2.95
FAM3D-201ENST00000358781 DNAJC5BQ9UF47 199 aa33.43■■■□□ 2.94
FAM3D-201ENST00000358781 EIF4G1Q04637 1599 aaKnown RBP32.96■■■□□ 2.87
FAM3D-201ENST00000358781 CC2D2AQ9P2K1 1620 aa32.85■■■□□ 2.85
FAM3D-201ENST00000358781 CECR2Q9BXF3 1484 aa32.64■■■□□ 2.82
FAM3D-201ENST00000358781 SMARCA4P51532 1647 aa32.29■■■□□ 2.76
FAM3D-201ENST00000358781 BAZ1AQ9NRL2 1556 aaPredicted RBP32.23■■■□□ 2.75
FAM3D-201ENST00000358781 NCAPD3P42695 1498 aa32.14■■■□□ 2.74
FAM3D-201ENST00000358781 ATAD2BQ9ULI0 1458 aa32.14■■■□□ 2.74
FAM3D-201ENST00000358781 SMARCA2P51531 1590 aa32.1■■■□□ 2.73
FAM3D-201ENST00000358781 MROH2BQ7Z745 1585 aa32.05■■■□□ 2.72
FAM3D-201ENST00000358781 PEG3Q9GZU2 1588 aa31.98■■■□□ 2.71
FAM3D-201ENST00000358781 HMGXB3Q12766 1538 aa31.98■■■□□ 2.71
FAM3D-201ENST00000358781 BAZ1BQ9UIG0 1483 aaKnown RBP31.87■■■□□ 2.69
FAM3D-201ENST00000358781 WIZO95785 1651 aa31.69■■■□□ 2.66
FAM3D-201ENST00000358781 RSF1Q96T23 1441 aaPredicted RBP31.65■■■□□ 2.66
FAM3D-201ENST00000358781 NESP48681 1621 aa31.39■■■□□ 2.62
FAM3D-201ENST00000358781 TOP2AP11388 1531 aaKnown RBP31.36■■■□□ 2.61
FAM3D-201ENST00000358781 LAMC3Q9Y6N6 1575 aa31.31■■■□□ 2.6
FAM3D-201ENST00000358781 ERCC6Q03468 1493 aa31.3■■■□□ 2.6
FAM3D-201ENST00000358781 CADPSQ9ULU8 1353 aa31.19■■■□□ 2.58
FAM3D-201ENST00000358781 PDS5BQ9NTI5 1447 aa31.1■■■□□ 2.57
FAM3D-201ENST00000358781 KIF21AQ7Z4S6 1674 aa31.03■■■□□ 2.56
FAM3D-201ENST00000358781 CUX2O14529 1486 aa31.03■■■□□ 2.56
FAM3D-201ENST00000358781 CCDC88BA6NC98 1476 aa30.99■■■□□ 2.55
FAM3D-201ENST00000358781 CFTRP13569 1480 aa30.99■■■□□ 2.55
FAM3D-201ENST00000358781 THOC2Q8NI27 1593 aaKnown RBP30.95■■■□□ 2.54
FAM3D-201ENST00000358781 FANCD2Q9BXW9 1451 aa30.83■■■□□ 2.53
FAM3D-201ENST00000358781 CEP164Q9UPV0 1460 aa30.81■■■□□ 2.52
FAM3D-201ENST00000358781 MRC2Q9UBG0 1479 aa30.79■■■□□ 2.52
FAM3D-201ENST00000358781 PRDM2Q13029 1718 aa30.77■■■□□ 2.52
FAM3D-201ENST00000358781 SUPT5HO00267 1087 aaKnown RBP30.74■■■□□ 2.51
FAM3D-201ENST00000358781 WDR62O43379 1518 aa30.69■■■□□ 2.5
FAM3D-201ENST00000358781 URB2Q14146 1524 aaKnown RBP30.54■■■□□ 2.48
FAM3D-201ENST00000358781 TOPBP1Q92547 1522 aa30.34■■■□□ 2.45
FAM3D-201ENST00000358781 ABCC8Q09428 1581 aa30.33■■■□□ 2.45
FAM3D-201ENST00000358781 DNMBPQ6XZF7 1577 aa30.29■■■□□ 2.44
FAM3D-201ENST00000358781 DNAJC5Q9H3Z4 198 aa30.18■■■□□ 2.42
FAM3D-201ENST00000358781 IFT140Q96RY7 1462 aa30.17■■■□□ 2.42
FAM3D-201ENST00000358781 CUX1P39880 1505 aa30.07■■■□□ 2.4
FAM3D-201ENST00000358781 POLA1P09884 1462 aaPredicted RBP30.07■■■□□ 2.4
FAM3D-201ENST00000358781 ZNF608Q9ULD9 1512 aaPredicted RBP30.04■■■□□ 2.4
FAM3D-201ENST00000358781 TARBP1Q13395 1621 aaKnown RBP30.03■■■□□ 2.4
FAM3D-201ENST00000358781 FGD5Q6ZNL6 1462 aa29.98■■■□□ 2.39
FAM3D-201ENST00000358781 SOGA1O94964 1423 aa29.94■■■□□ 2.38
FAM3D-201ENST00000358781 RAD54L2Q9Y4B4 1467 aa29.94■■■□□ 2.38
FAM3D-201ENST00000358781 EIF4G3O43432 1585 aaKnown RBP29.92■■■□□ 2.38
FAM3D-201ENST00000358781 AQRO60306 1485 aaKnown RBP eCLIP29.86■■■□□ 2.37
FAM3D-201ENST00000358781 WRNQ14191 1432 aaPredicted RBP eCLIP29.83■■■□□ 2.37
FAM3D-201ENST00000358781 TOP2BQ02880 1626 aa29.79■■■□□ 2.36
FAM3D-201ENST00000358781 BIVM-ERCC5R4GMW8 1640 aa29.79■■■□□ 2.36
FAM3D-201ENST00000358781 TDRD9Q8NDG6 1382 aaKnown RBP29.78■■■□□ 2.36
FAM3D-201ENST00000358781 WDR97A6NE52 1622 aa29.78■■■□□ 2.36
FAM3D-201ENST00000358781 SYNJ1O43426 1573 aa29.77■■■□□ 2.36
FAM3D-201ENST00000358781 OSCARQ8IYS5 282 aa29.71■■■□□ 2.35
FAM3D-201ENST00000358781 ABCA10Q8WWZ4 1543 aa29.69■■■□□ 2.34
FAM3D-201ENST00000358781 GRIN2BQ13224 1484 aa29.61■■■□□ 2.33
FAM3D-201ENST00000358781 GAPVD1Q14C86 1478 aa29.6■■■□□ 2.33
FAM3D-201ENST00000358781 ABCA5Q8WWZ7 1642 aa29.59■■■□□ 2.33
FAM3D-201ENST00000358781 SNAPC4Q5SXM2 1469 aa29.58■■■□□ 2.33
FAM3D-201ENST00000358781 CHD1O14646 1710 aa29.57■■■□□ 2.32
FAM3D-201ENST00000358781 PBRM1Q86U86 1689 aa29.55■■■□□ 2.32
FAM3D-201ENST00000358781 MAGI1Q96QZ7 1491 aaPredicted RBP29.55■■■□□ 2.32
FAM3D-201ENST00000358781 FBLN2P98095 1184 aa29.5■■■□□ 2.31
FAM3D-201ENST00000358781 SYNJ2O15056 1496 aa29.43■■■□□ 2.3
FAM3D-201ENST00000358781 CHMP7Q8WUX9 453 aaPredicted RBP29.42■■■□□ 2.3
FAM3D-201ENST00000358781 ERICH3Q5RHP9 1530 aa29.33■■■□□ 2.29
FAM3D-201ENST00000358781 ADAMTS12P58397 1594 aa29.31■■■□□ 2.28
FAM3D-201ENST00000358781 RIMBP3CA6NJZ7 1639 aa29.26■■■□□ 2.27
FAM3D-201ENST00000358781 RIMBP3BA6NNM3 1639 aa29.26■■■□□ 2.27
FAM3D-201ENST00000358781 RIMBP3Q9UFD9 1639 aa29.26■■■□□ 2.27
FAM3D-201ENST00000358781 FHAD1B1AJZ9 1412 aa29.26■■■□□ 2.27
FAM3D-201ENST00000358781 CLASP1Q7Z460 1538 aa29.25■■■□□ 2.27
FAM3D-201ENST00000358781 GRIN2AQ12879 1464 aa29.23■■■□□ 2.27
FAM3D-201ENST00000358781 ARHGEF11O15085 1522 aa29.23■■■□□ 2.27
FAM3D-201ENST00000358781 KIF27Q86VH2 1401 aa29.22■■■□□ 2.27
FAM3D-201ENST00000358781 TRIM41Q8WV44 630 aa29.14■■■□□ 2.25
FAM3D-201ENST00000358781 IGF1RP08069 1367 aa29.12■■■□□ 2.25
FAM3D-201ENST00000358781 NUP160Q12769 1436 aa29.1■■■□□ 2.25
FAM3D-201ENST00000358781 CEP170Q5SW79 1584 aa29.09■■■□□ 2.25
FAM3D-201ENST00000358781 CUL7Q14999 1698 aa29.05■■■□□ 2.24
FAM3D-201ENST00000358781 ARAP1Q96P48 1450 aa29■■■□□ 2.23
FAM3D-201ENST00000358781 CYB5RLQ6IPT4 315 aa28.95■■■□□ 2.23
FAM3D-201ENST00000358781 CARMIL1Q5VZK9 1371 aa28.94■■■□□ 2.22
FAM3D-201ENST00000358781 RUSC2Q8N2Y8 1516 aa28.92■■■□□ 2.22
FAM3D-201ENST00000358781 SHROOM2Q13796 1616 aa28.9■■■□□ 2.22
FAM3D-201ENST00000358781 ERCC6L2Q5T890 1561 aa28.84■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 86.1 ms