Protein–RNA interactions for Protein: Q8NB14

USP38, Ubiquitin carboxyl-terminal hydrolase 38, humanhuman

Predictions only

Length 1,042 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP38Q8NB14 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC19.44■□□□□ 0.7
USP38Q8NB14 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP38Q8NB14 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC19.44■□□□□ 0.7
USP38Q8NB14 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC19.44■□□□□ 0.7
USP38Q8NB14 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP38Q8NB14 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP38Q8NB14 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC19.43■□□□□ 0.7
USP38Q8NB14 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
USP38Q8NB14 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC19.43■□□□□ 0.7
USP38Q8NB14 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC19.43■□□□□ 0.7
USP38Q8NB14 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC19.43■□□□□ 0.7
USP38Q8NB14 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC19.43■□□□□ 0.7
USP38Q8NB14 BCRP1-201ENST00000444246 691 ntBASIC19.43■□□□□ 0.7
USP38Q8NB14 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
USP38Q8NB14 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
USP38Q8NB14 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC19.43■□□□□ 0.7
USP38Q8NB14 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC19.43■□□□□ 0.7
USP38Q8NB14 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC19.43■□□□□ 0.7
USP38Q8NB14 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC19.43■□□□□ 0.7
USP38Q8NB14 MIR4469-201ENST00000583919 79 ntBASIC19.43■□□□□ 0.7
USP38Q8NB14 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
USP38Q8NB14 PGM5P2-202ENST00000637225 1043 ntBASIC19.43■□□□□ 0.7
USP38Q8NB14 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP38Q8NB14 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
USP38Q8NB14 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
USP38Q8NB14 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP38Q8NB14 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP38Q8NB14 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP38Q8NB14 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
USP38Q8NB14 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP38Q8NB14 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP38Q8NB14 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP38Q8NB14 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP38Q8NB14 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC19.42■□□□□ 0.7
USP38Q8NB14 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC19.42■□□□□ 0.7
USP38Q8NB14 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP38Q8NB14 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP38Q8NB14 BEX3-201ENST00000361298 921 ntTSL 2 BASIC19.42■□□□□ 0.7
USP38Q8NB14 PTMS-202ENST00000389462 773 ntTSL 2 BASIC19.42■□□□□ 0.7
USP38Q8NB14 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP38Q8NB14 ALG1L5P-201ENST00000482043 771 ntBASIC19.42■□□□□ 0.7
USP38Q8NB14 YBX1P5-201ENST00000509441 847 ntBASIC19.42■□□□□ 0.7
USP38Q8NB14 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
USP38Q8NB14 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC19.42■□□□□ 0.7
USP38Q8NB14 RPS29-206ENST00000557111 488 ntTSL 2 BASIC19.42■□□□□ 0.7
USP38Q8NB14 AP002472.1-201ENST00000577490 586 ntBASIC19.42■□□□□ 0.7
USP38Q8NB14 AC006557.2-201ENST00000592985 1240 ntBASIC19.42■□□□□ 0.7
USP38Q8NB14 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC19.42■□□□□ 0.7
USP38Q8NB14 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC19.42■□□□□ 0.7
USP38Q8NB14 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP38Q8NB14 KRT8P47-201ENST00000604727 1398 ntBASIC19.42■□□□□ 0.7
USP38Q8NB14 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
USP38Q8NB14 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
USP38Q8NB14 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
USP38Q8NB14 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
USP38Q8NB14 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
USP38Q8NB14 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
USP38Q8NB14 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
USP38Q8NB14 AP002414.3-201ENST00000589352 1468 ntBASIC19.41■□□□□ 0.7
USP38Q8NB14 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC19.41■□□□□ 0.7
USP38Q8NB14 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP38Q8NB14 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP38Q8NB14 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC19.41■□□□□ 0.7
USP38Q8NB14 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
USP38Q8NB14 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC19.41■□□□□ 0.7
USP38Q8NB14 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
USP38Q8NB14 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP38Q8NB14 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP38Q8NB14 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP38Q8NB14 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC19.41■□□□□ 0.7
USP38Q8NB14 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC19.41■□□□□ 0.7
USP38Q8NB14 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
USP38Q8NB14 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC19.41■□□□□ 0.7
USP38Q8NB14 CRCP-205ENST00000431089 942 ntTSL 2 BASIC19.41■□□□□ 0.7
USP38Q8NB14 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
USP38Q8NB14 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC19.41■□□□□ 0.7
USP38Q8NB14 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
USP38Q8NB14 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC19.41■□□□□ 0.7
USP38Q8NB14 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC19.41■□□□□ 0.7
USP38Q8NB14 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC19.41■□□□□ 0.7
USP38Q8NB14 AC005829.1-201ENST00000570002 483 ntBASIC19.41■□□□□ 0.7
USP38Q8NB14 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC19.41■□□□□ 0.7
USP38Q8NB14 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC19.41■□□□□ 0.7
USP38Q8NB14 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC19.41■□□□□ 0.7
USP38Q8NB14 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP38Q8NB14 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC19.41■□□□□ 0.7
USP38Q8NB14 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP38Q8NB14 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
USP38Q8NB14 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC19.41■□□□□ 0.7
USP38Q8NB14 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC19.41■□□□□ 0.7
USP38Q8NB14 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC19.41■□□□□ 0.7
USP38Q8NB14 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
USP38Q8NB14 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP38Q8NB14 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC19.4■□□□□ 0.7
USP38Q8NB14 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC19.4■□□□□ 0.7
USP38Q8NB14 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP38Q8NB14 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP38Q8NB14 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
USP38Q8NB14 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
USP38Q8NB14 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms