RNA–Protein interactions for RNA: ENST00000601912.5

VRK3-225, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,668 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-225ENST00000601912 NISCHQ9Y2I1 1504 aa41.21■■■■■ 4.19
VRK3-225ENST00000601912 CCDC180Q9P1Z9 1646 aa36.06■■■■□ 3.36
VRK3-225ENST00000601912 ZCCHC6Q5VYS8 1495 aaKnown RBP34.56■■■■□ 3.12
VRK3-225ENST00000601912 ABCC9O60706 1549 aa34.3■■■■□ 3.08
VRK3-225ENST00000601912 DCAF8L2P0C7V8 631 aa34.17■■■■□ 3.06
VRK3-225ENST00000601912 DCAF1Q9Y4B6 1507 aa34.11■■■■□ 3.05
VRK3-225ENST00000601912 MYO15BQ96JP2 1530 aa33.81■■■■□ 3
VRK3-225ENST00000601912 NACADO15069 1562 aa33.68■■■□□ 2.98
VRK3-225ENST00000601912 RB1CC1Q8TDY2 1594 aa33.45■■■□□ 2.94
VRK3-225ENST00000601912 SHROOM4Q9ULL8 1493 aa33.41■■■□□ 2.94
VRK3-225ENST00000601912 SCRIBQ14160 1630 aa33.09■■■□□ 2.89
VRK3-225ENST00000601912 UNC13AQ9UPW8 1703 aa32.65■■■□□ 2.82
VRK3-225ENST00000601912 BICRAQ9NZM4 1560 aa32.36■■■□□ 2.77
VRK3-225ENST00000601912 PABPN1Q86U42 306 aaKnown RBP eCLIP32.31■■■□□ 2.76
VRK3-225ENST00000601912 SUPT5HO00267 1087 aaKnown RBP32.07■■■□□ 2.72
VRK3-225ENST00000601912 CECR2Q9BXF3 1484 aa32■■■□□ 2.71
VRK3-225ENST00000601912 BAZ1AQ9NRL2 1556 aaPredicted RBP31.87■■■□□ 2.69
VRK3-225ENST00000601912 RSF1Q96T23 1441 aaPredicted RBP31.87■■■□□ 2.69
VRK3-225ENST00000601912 MROH2BQ7Z745 1585 aa31.8■■■□□ 2.68
VRK3-225ENST00000601912 SMARCA4P51532 1647 aa31.72■■■□□ 2.67
VRK3-225ENST00000601912 WIZO95785 1651 aa31.51■■■□□ 2.63
VRK3-225ENST00000601912 EIF4G1Q04637 1599 aaKnown RBP31.44■■■□□ 2.62
VRK3-225ENST00000601912 PEG3Q9GZU2 1588 aa31.36■■■□□ 2.61
VRK3-225ENST00000601912 SMARCA2P51531 1590 aa31.29■■■□□ 2.6
VRK3-225ENST00000601912 ATAD2BQ9ULI0 1458 aa31.28■■■□□ 2.6
VRK3-225ENST00000601912 TOP2AP11388 1531 aaKnown RBP31.22■■■□□ 2.59
VRK3-225ENST00000601912 BAZ1BQ9UIG0 1483 aaKnown RBP31.11■■■□□ 2.57
VRK3-225ENST00000601912 NCAPD3P42695 1498 aa31.08■■■□□ 2.57
VRK3-225ENST00000601912 CC2D2AQ9P2K1 1620 aa31.04■■■□□ 2.56
VRK3-225ENST00000601912 HMGXB3Q12766 1538 aa31■■■□□ 2.55
VRK3-225ENST00000601912 CCDC88BA6NC98 1476 aa30.89■■■□□ 2.54
VRK3-225ENST00000601912 CHIC1Q5VXU3 224 aa30.55■■■□□ 2.48
VRK3-225ENST00000601912 DNAJC5BQ9UF47 199 aa30.44■■■□□ 2.46
VRK3-225ENST00000601912 CFTRP13569 1480 aa30.31■■■□□ 2.44
VRK3-225ENST00000601912 CADPSQ9ULU8 1353 aa30.27■■■□□ 2.44
VRK3-225ENST00000601912 TRIM41Q8WV44 630 aa30.22■■■□□ 2.43
VRK3-225ENST00000601912 ABCC8Q09428 1581 aa30.12■■■□□ 2.41
VRK3-225ENST00000601912 PRDM2Q13029 1718 aa30.1■■■□□ 2.41
VRK3-225ENST00000601912 LAMC3Q9Y6N6 1575 aa30.06■■■□□ 2.4
VRK3-225ENST00000601912 WRNQ14191 1432 aaPredicted RBP eCLIP30.04■■■□□ 2.4
VRK3-225ENST00000601912 NESP48681 1621 aa30.01■■■□□ 2.39
VRK3-225ENST00000601912 FANCD2Q9BXW9 1451 aa29.92■■■□□ 2.38
VRK3-225ENST00000601912 PDS5BQ9NTI5 1447 aa29.88■■■□□ 2.37
VRK3-225ENST00000601912 SYNJ1O43426 1573 aa29.86■■■□□ 2.37
VRK3-225ENST00000601912 TOP2BQ02880 1626 aa29.79■■■□□ 2.36
VRK3-225ENST00000601912 CEP164Q9UPV0 1460 aa29.77■■■□□ 2.36
VRK3-225ENST00000601912 CUX1P39880 1505 aa29.75■■■□□ 2.35
VRK3-225ENST00000601912 BIVM-ERCC5R4GMW8 1640 aa29.75■■■□□ 2.35
VRK3-225ENST00000601912 KIF21AQ7Z4S6 1674 aa29.64■■■□□ 2.33
VRK3-225ENST00000601912 DNMBPQ6XZF7 1577 aa29.6■■■□□ 2.33
VRK3-225ENST00000601912 FAM9AQ8IZU1 332 aaPredicted RBP29.6■■■□□ 2.33
VRK3-225ENST00000601912 TOPBP1Q92547 1522 aa29.55■■■□□ 2.32
VRK3-225ENST00000601912 SOGA1O94964 1423 aa29.52■■■□□ 2.32
VRK3-225ENST00000601912 EEA1Q15075 1411 aa29.52■■■□□ 2.32
VRK3-225ENST00000601912 URB2Q14146 1524 aaKnown RBP29.52■■■□□ 2.32
VRK3-225ENST00000601912 ERCC6Q03468 1493 aa29.5■■■□□ 2.31
VRK3-225ENST00000601912 FGD5Q6ZNL6 1462 aa29.49■■■□□ 2.31
VRK3-225ENST00000601912 MRC2Q9UBG0 1479 aa29.46■■■□□ 2.31
VRK3-225ENST00000601912 RUSC2Q8N2Y8 1516 aa29.4■■■□□ 2.3
VRK3-225ENST00000601912 POLA1P09884 1462 aaPredicted RBP29.39■■■□□ 2.29
VRK3-225ENST00000601912 CSRNP3Q8WYN3 585 aa29.37■■■□□ 2.29
VRK3-225ENST00000601912 LOC105371045A0A1W2PR82 267 aa29.35■■■□□ 2.29
VRK3-225ENST00000601912 KIF27Q86VH2 1401 aa29.33■■■□□ 2.29
VRK3-225ENST00000601912 WDR62O43379 1518 aa29.3■■■□□ 2.28
VRK3-225ENST00000601912 CUX2O14529 1486 aa29.27■■■□□ 2.28
VRK3-225ENST00000601912 RAD54L2Q9Y4B4 1467 aa29.27■■■□□ 2.28
VRK3-225ENST00000601912 ABCA10Q8WWZ4 1543 aa29.24■■■□□ 2.27
VRK3-225ENST00000601912 THOC2Q8NI27 1593 aaKnown RBP29.23■■■□□ 2.27
VRK3-225ENST00000601912 EHMT2Q96KQ7 1210 aa29.16■■■□□ 2.26
VRK3-225ENST00000601912 WDR97A6NE52 1622 aa29.1■■■□□ 2.25
VRK3-225ENST00000601912 TARBP1Q13395 1621 aaKnown RBP29.1■■■□□ 2.25
VRK3-225ENST00000601912 IFT140Q96RY7 1462 aa29.08■■■□□ 2.25
VRK3-225ENST00000601912 KIF21BO75037 1637 aa29.08■■■□□ 2.25
VRK3-225ENST00000601912 GOLGA3Q08378 1498 aa29.06■■■□□ 2.24
VRK3-225ENST00000601912 IGF1RP08069 1367 aa29.06■■■□□ 2.24
VRK3-225ENST00000601912 TDRD9Q8NDG6 1382 aaKnown RBP29.03■■■□□ 2.24
VRK3-225ENST00000601912 PRXQ9BXM0 1461 aa29.02■■■□□ 2.24
VRK3-225ENST00000601912 GAPVD1Q14C86 1478 aa28.99■■■□□ 2.23
VRK3-225ENST00000601912 UBTFP17480 764 aaKnown RBP28.99■■■□□ 2.23
VRK3-225ENST00000601912 ABCA5Q8WWZ7 1642 aa28.98■■■□□ 2.23
VRK3-225ENST00000601912 ERICH3Q5RHP9 1530 aa28.96■■■□□ 2.23
VRK3-225ENST00000601912 RAPGEF2Q9Y4G8 1499 aa28.94■■■□□ 2.22
VRK3-225ENST00000601912 CARMIL1Q5VZK9 1371 aa28.93■■■□□ 2.22
VRK3-225ENST00000601912 TNIKQ9UKE5 1360 aa28.93■■■□□ 2.22
VRK3-225ENST00000601912 AQRO60306 1485 aaKnown RBP eCLIP28.89■■■□□ 2.213e-7■■■■■ 63.7
VRK3-225ENST00000601912 ZNF608Q9ULD9 1512 aaPredicted RBP28.86■■■□□ 2.21
VRK3-225ENST00000601912 CUL7Q14999 1698 aa28.86■■■□□ 2.21
VRK3-225ENST00000601912 GRIN2BQ13224 1484 aa28.81■■■□□ 2.2
VRK3-225ENST00000601912 PBRM1Q86U86 1689 aa28.79■■■□□ 2.2
VRK3-225ENST00000601912 EIF4G3O43432 1585 aaKnown RBP28.77■■■□□ 2.2
VRK3-225ENST00000601912 CEP162Q5TB80 1403 aa28.73■■■□□ 2.19
VRK3-225ENST00000601912 FHAD1B1AJZ9 1412 aa28.69■■■□□ 2.18
VRK3-225ENST00000601912 ADAMTS12P58397 1594 aa28.64■■■□□ 2.17
VRK3-225ENST00000601912 SNAPC4Q5SXM2 1469 aa28.62■■■□□ 2.17
VRK3-225ENST00000601912 MAGI1Q96QZ7 1491 aaPredicted RBP28.6■■■□□ 2.17
VRK3-225ENST00000601912 CLIP1P30622 1438 aa28.58■■■□□ 2.17
VRK3-225ENST00000601912 RANGAP1P46060 587 aaPredicted RBP28.53■■■□□ 2.16
VRK3-225ENST00000601912 SYNJ2O15056 1496 aa28.48■■■□□ 2.15
VRK3-225ENST00000601912 CHMP7Q8WUX9 453 aaPredicted RBP28.47■■■□□ 2.15
VRK3-225ENST00000601912 CTTNBP2Q8WZ74 1663 aa28.47■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 83.2 ms