RNA–Protein interactions for RNA: ENST00000305510.3

CNNM3-201, Transcript of cyclin and CBS domain divalent metal cation transport mediator 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CNNM3, Length 3,447 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNNM3-201ENST00000305510 NISCHQ9Y2I1 1504 aa35.02■■■■□ 3.2
CNNM3-201ENST00000305510 SHROOM4Q9ULL8 1493 aa31.68■■■□□ 2.66
CNNM3-201ENST00000305510 DCAF8L2P0C7V8 631 aa31.32■■■□□ 2.6
CNNM3-201ENST00000305510 SUPT5HO00267 1087 aaKnown RBP31.29■■■□□ 2.6
CNNM3-201ENST00000305510 HRCP23327 699 aa30.15■■■□□ 2.42
CNNM3-201ENST00000305510 PPARGC1BQ86YN6 1023 aaKnown RBP29.77■■■□□ 2.36
CNNM3-201ENST00000305510 PELP1Q8IZL8 1130 aaKnown RBP29.76■■■□□ 2.36
CNNM3-201ENST00000305510 CHIC1Q5VXU3 224 aa29.65■■■□□ 2.34
CNNM3-201ENST00000305510 PCGF6Q9BYE7 350 aa29.59■■■□□ 2.33
CNNM3-201ENST00000305510 EHMT2Q96KQ7 1210 aa29.52■■■□□ 2.32
CNNM3-201ENST00000305510 ZCCHC6Q5VYS8 1495 aaKnown RBP29.44■■■□□ 2.3
CNNM3-201ENST00000305510 LOC105371045A0A1W2PR82 267 aa29.39■■■□□ 2.3
CNNM3-201ENST00000305510 MYO15BQ96JP2 1530 aa29.24■■■□□ 2.27
CNNM3-201ENST00000305510 FAM9AQ8IZU1 332 aaPredicted RBP29.19■■■□□ 2.26
CNNM3-201ENST00000305510 CCDC180Q9P1Z9 1646 aa28.91■■■□□ 2.22
CNNM3-201ENST00000305510 SCAF1Q9H7N4 1312 aaKnown RBP28.88■■■□□ 2.21
CNNM3-201ENST00000305510 TRIM41Q8WV44 630 aa28.73■■■□□ 2.19
CNNM3-201ENST00000305510 MYT1Q01538 1121 aa28.69■■■□□ 2.18
CNNM3-201ENST00000305510 TTBK1Q5TCY1 1321 aaPredicted RBP28.47■■■□□ 2.15
CNNM3-201ENST00000305510 ABCC9O60706 1549 aa28.36■■■□□ 2.13
CNNM3-201ENST00000305510 TRIM26Q12899 539 aaPredicted RBP28.35■■■□□ 2.13
CNNM3-201ENST00000305510 SCRIBQ14160 1630 aa28.32■■■□□ 2.12
CNNM3-201ENST00000305510 ZEB1P37275 1124 aaPredicted RBP28.11■■■□□ 2.09
CNNM3-201ENST00000305510 RSF1Q96T23 1441 aaPredicted RBP28.09■■■□□ 2.09
CNNM3-201ENST00000305510 DCAF1Q9Y4B6 1507 aa28.04■■■□□ 2.08
CNNM3-201ENST00000305510 ACIN1Q9UKV3 1341 aaKnown RBP27.99■■■□□ 2.07
CNNM3-201ENST00000305510 NEUROD1Q13562 356 aa27.97■■■□□ 2.07
CNNM3-201ENST00000305510 GTF3C3Q9Y5Q9 886 aa27.93■■■□□ 2.06
CNNM3-201ENST00000305510 CECR2Q9BXF3 1484 aa27.82■■■□□ 2.04
CNNM3-201ENST00000305510 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.8■■■□□ 2.04
CNNM3-201ENST00000305510 RANGAP1P46060 587 aaPredicted RBP27.79■■■□□ 2.04
CNNM3-201ENST00000305510 RB1CC1Q8TDY2 1594 aa27.74■■■□□ 2.03
CNNM3-201ENST00000305510 PABPN1Q86U42 306 aaKnown RBP eCLIP27.73■■■□□ 2.03
CNNM3-201ENST00000305510 CCER1Q8TC90 406 aaPredicted RBP27.73■■■□□ 2.03
CNNM3-201ENST00000305510 CENPBP07199 599 aaPredicted RBP27.66■■■□□ 2.02
CNNM3-201ENST00000305510 UBTFP17480 764 aaKnown RBP27.64■■■□□ 2.01
CNNM3-201ENST00000305510 MROH2BQ7Z745 1585 aa27.5■■□□□ 1.99
CNNM3-201ENST00000305510 DIEXFQ68CQ4 756 aaKnown RBP27.34■■□□□ 1.97
CNNM3-201ENST00000305510 YTHDC1Q96MU7 727 aaKnown RBP27.33■■□□□ 1.97
CNNM3-201ENST00000305510 WIZO95785 1651 aa27.3■■□□□ 1.96
CNNM3-201ENST00000305510 HNRNPUL2Q1KMD3 747 aaKnown RBP27.23■■□□□ 1.95
CNNM3-201ENST00000305510 NACADO15069 1562 aa27.15■■□□□ 1.94
CNNM3-201ENST00000305510 ABCC8Q09428 1581 aa27.1■■□□□ 1.93
CNNM3-201ENST00000305510 CSRNP3Q8WYN3 585 aa27.08■■□□□ 1.93
CNNM3-201ENST00000305510 APLP2Q06481 763 aa27.04■■□□□ 1.92
CNNM3-201ENST00000305510 SOGA1O94964 1423 aa27.03■■□□□ 1.92
CNNM3-201ENST00000305510 BCL11AQ9H165 835 aa27.02■■□□□ 1.92
CNNM3-201ENST00000305510 CCDC88BA6NC98 1476 aa27.02■■□□□ 1.92
CNNM3-201ENST00000305510 RUSC2Q8N2Y8 1516 aa26.85■■□□□ 1.89
CNNM3-201ENST00000305510 CEP162Q5TB80 1403 aa26.85■■□□□ 1.89
CNNM3-201ENST00000305510 BAZ1AQ9NRL2 1556 aaPredicted RBP26.84■■□□□ 1.89
CNNM3-201ENST00000305510 ITGAEP38570 1179 aa26.76■■□□□ 1.87
CNNM3-201ENST00000305510 ANP32EQ9BTT0 268 aa26.66■■□□□ 1.86
CNNM3-201ENST00000305510 ZNF316A6NFI3 1004 aaPredicted RBP26.6■■□□□ 1.85
CNNM3-201ENST00000305510 ATP1B4Q9UN42 357 aaPredicted RBP26.6■■□□□ 1.85
CNNM3-201ENST00000305510 MIER1Q8N108 512 aa26.59■■□□□ 1.85
CNNM3-201ENST00000305510 WRNQ14191 1432 aaPredicted RBP eCLIP26.56■■□□□ 1.849e-6■■■■■ 50.1
CNNM3-201ENST00000305510 TNIKQ9UKE5 1360 aa26.56■■□□□ 1.84
CNNM3-201ENST00000305510 TOP2AP11388 1531 aaKnown RBP26.54■■□□□ 1.84
CNNM3-201ENST00000305510 SMARCA4P51532 1647 aa26.52■■□□□ 1.84
CNNM3-201ENST00000305510 SMARCA2P51531 1590 aa26.48■■□□□ 1.83
CNNM3-201ENST00000305510 CLIP1P30622 1438 aa26.42■■□□□ 1.82
CNNM3-201ENST00000305510 GOLGA3Q08378 1498 aa26.39■■□□□ 1.82
CNNM3-201ENST00000305510 TSHZ2Q9NRE2 1034 aa26.36■■□□□ 1.81
CNNM3-201ENST00000305510 SUPT16HQ9Y5B9 1047 aaKnown RBP26.34■■□□□ 1.81
CNNM3-201ENST00000305510 P3H3Q8IVL6 736 aa26.3■■□□□ 1.8
CNNM3-201ENST00000305510 BAZ1BQ9UIG0 1483 aaKnown RBP26.26■■□□□ 1.79
CNNM3-201ENST00000305510 EEA1Q15075 1411 aa26.24■■□□□ 1.79
CNNM3-201ENST00000305510 PRKCSHP14314 528 aaPredicted RBP26.22■■□□□ 1.79
CNNM3-201ENST00000305510 KANK4Q5T7N3 995 aaPredicted RBP26.21■■□□□ 1.79
CNNM3-201ENST00000305510 RAPGEF2Q9Y4G8 1499 aa26.2■■□□□ 1.79
CNNM3-201ENST00000305510 CEP164Q9UPV0 1460 aa26.17■■□□□ 1.78
CNNM3-201ENST00000305510 EIF4G1Q04637 1599 aaKnown RBP26.16■■□□□ 1.78
CNNM3-201ENST00000305510 ATAD2BQ9ULI0 1458 aa26.11■■□□□ 1.77
CNNM3-201ENST00000305510 FAM50AQ14320 339 aaKnown RBP26.09■■□□□ 1.77
CNNM3-201ENST00000305510 BCANQ96GW7 911 aa26.08■■□□□ 1.77
CNNM3-201ENST00000305510 SYNJ1O43426 1573 aa26.07■■□□□ 1.76
CNNM3-201ENST00000305510 UNC13AQ9UPW8 1703 aa26.07■■□□□ 1.76
CNNM3-201ENST00000305510 VPS8Q8N3P4 1428 aa26.02■■□□□ 1.76
CNNM3-201ENST00000305510 CLSPNQ9HAW4 1339 aa26■■□□□ 1.75
CNNM3-201ENST00000305510 BICRAQ9NZM4 1560 aa25.99■■□□□ 1.75
CNNM3-201ENST00000305510 HIRIP3Q9BW71 556 aaPredicted RBP25.95■■□□□ 1.74
CNNM3-201ENST00000305510 ARID3CA6NKF2 412 aa25.79■■□□□ 1.72
CNNM3-201ENST00000305510 SIN3AQ96ST3 1273 aa25.76■■□□□ 1.71
CNNM3-201ENST00000305510 KIF21BO75037 1637 aa25.76■■□□□ 1.71
CNNM3-201ENST00000305510 RBM19Q9Y4C8 960 aaKnown RBP25.74■■□□□ 1.71
CNNM3-201ENST00000305510 KIF27Q86VH2 1401 aa25.74■■□□□ 1.71
CNNM3-201ENST00000305510 DDX10Q13206 875 aaKnown RBP25.72■■□□□ 1.71
CNNM3-201ENST00000305510 FKBP8Q14318 412 aa25.7■■□□□ 1.7
CNNM3-201ENST00000305510 KCNH8Q96L42 1107 aa25.7■■□□□ 1.7
CNNM3-201ENST00000305510 DHX57Q6P158 1386 aaKnown RBP25.67■■□□□ 1.7
CNNM3-201ENST00000305510 CUX2O14529 1486 aa25.64■■□□□ 1.7
CNNM3-201ENST00000305510 ARAP1Q96P48 1450 aa25.63■■□□□ 1.69
CNNM3-201ENST00000305510 CCNB3Q8WWL7 1395 aa25.61■■□□□ 1.69
CNNM3-201ENST00000305510 CNGB1Q14028 1251 aaPredicted RBP25.6■■□□□ 1.69
CNNM3-201ENST00000305510 ERICH6Q7L0X2 663 aa25.6■■□□□ 1.69
CNNM3-201ENST00000305510 CARMIL1Q5VZK9 1371 aa25.53■■□□□ 1.68
CNNM3-201ENST00000305510 MSH5O43196 834 aa25.51■■□□□ 1.67
CNNM3-201ENST00000305510 RAB3GAP2Q9H2M9 1393 aa25.49■■□□□ 1.67
CNNM3-201ENST00000305510 CUX1P39880 1505 aa25.49■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms