Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 BRD2-219ENST00000607833 2338 ntAPPRIS ALT2 TSL 1 (best)14.21□□□□□ -0.133e-6■□□□□ 9.5
DDX55Q8NHQ9 HNRNPH3-208ENST00000481819 2704 ntTSL 1 (best)14.11□□□□□ -0.153e-11■□□□□ 9.5
DDX55Q8NHQ9 DDIT3-201ENST00000346473 906 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.162e-6■□□□□ 9.5
DDX55Q8NHQ9 MVB12B-204ENST00000485886 4537 ntTSL 213.91□□□□□ -0.182e-6■□□□□ 9.5
DDX55Q8NHQ9 DDIT3-202ENST00000547303 872 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.252e-6■□□□□ 9.5
DDX55Q8NHQ9 CD276-208ENST00000559978 503 ntTSL 213.37□□□□□ -0.272e-6■□□□□ 9.5
DDX55Q8NHQ9 RPS15-213ENST00000617694 338 ntTSL 313.28□□□□□ -0.281e-14■□□□□ 9.5
DDX55Q8NHQ9 SPG7-222ENST00000569820 2305 ntTSL 512.97□□□□□ -0.332e-6■□□□□ 9.5
DDX55Q8NHQ9 CDC25B-201ENST00000245960 3597 ntAPPRIS P4 TSL 1 (best) BASIC12.63□□□□□ -0.393e-9■□□□□ 9.5
DDX55Q8NHQ9 AC002094.3-201ENST00000555059 851 ntAPPRIS P1 TSL 4 BASIC12.12□□□□□ -0.473e-9■□□□□ 9.5
DDX55Q8NHQ9 ERCC3-201ENST00000285398 2750 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.592e-6■□□□□ 9.5
DDX55Q8NHQ9 HNRNPH3-205ENST00000469172 3356 ntTSL 211.28□□□□□ -0.63e-11■□□□□ 9.5
DDX55Q8NHQ9 DDIT3-205ENST00000552740 951 ntTSL 1 (best) BASIC10.72□□□□□ -0.692e-6■□□□□ 9.5
DDX55Q8NHQ9 ERCC3-208ENST00000491292 4018 ntTSL 210.39□□□□□ -0.752e-6■□□□□ 9.5
DDX55Q8NHQ9 HNRNPH3-203ENST00000461310 648 ntTSL 510.1□□□□□ -0.792e-6■□□□□ 9.5
DDX55Q8NHQ9 RPL34-205ENST00000503574 2627 ntTSL 210.07□□□□□ -0.83e-9■□□□□ 9.5
DDX55Q8NHQ9 RPL34-201ENST00000394665 529 ntAPPRIS P1 TSL 2 BASIC9.81□□□□□ -0.843e-9■□□□□ 9.5
DDX55Q8NHQ9 RPL34-204ENST00000502534 560 ntAPPRIS P1 TSL 4 BASIC9.81□□□□□ -0.843e-9■□□□□ 9.5
DDX55Q8NHQ9 RPL34-206ENST00000504231 629 ntTSL 1 (best)9.81□□□□□ -0.843e-9■□□□□ 9.5
DDX55Q8NHQ9 DDIT3-204ENST00000551116 1067 ntTSL 1 (best) BASIC9.51□□□□□ -0.892e-6■□□□□ 9.5
DDX55Q8NHQ9 WDR45B-209ENST00000576517 779 ntTSL 39.05□□□□□ -0.965e-12■□□□□ 9.5
DDX55Q8NHQ9 RPL34-202ENST00000394667 441 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.083e-9■□□□□ 9.5
DDX55Q8NHQ9 RPL34-203ENST00000394668 853 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.223e-9■□□□□ 9.5
DDX55Q8NHQ9 DDIT3-206ENST00000623876 1151 nt6.92□□□□□ -1.32e-6■□□□□ 9.5
DDX55Q8NHQ9 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC23.38■■□□□ 1.335e-19■□□□□ 9.5
DDX55Q8NHQ9 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC21.73■■□□□ 1.075e-19■□□□□ 9.5
DDX55Q8NHQ9 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.565e-19■□□□□ 9.5
DDX55Q8NHQ9 SLC25A3-216ENST00000551917 1359 ntAPPRIS P4 TSL 2 BASIC16.83■□□□□ 0.285e-19■□□□□ 9.5
DDX55Q8NHQ9 SLC25A3-202ENST00000228318 1678 ntAPPRIS P4 TSL 5 BASIC15.79■□□□□ 0.125e-19■□□□□ 9.5
DDX55Q8NHQ9 SLC25A3-212ENST00000549338 1285 ntAPPRIS ALT1 TSL 3 BASIC15.41■□□□□ 0.065e-19■□□□□ 9.5
DDX55Q8NHQ9 SLC25A3-214ENST00000551123 1417 ntTSL 1 (best)14.69□□□□□ -0.065e-19■□□□□ 9.5
DDX55Q8NHQ9 SLC25A3-203ENST00000401722 6087 ntAPPRIS ALT1 TSL 1 (best) BASIC12.32□□□□□ -0.445e-19■□□□□ 9.5
DDX55Q8NHQ9 SLC25A3-204ENST00000546766 3236 ntTSL 1 (best)11.16□□□□□ -0.625e-19■□□□□ 9.5
DDX55Q8NHQ9 SLC25A3-207ENST00000547869 1018 ntTSL 27.38□□□□□ -1.235e-19■□□□□ 9.5
DDX55Q8NHQ9 SLC25A3-210ENST00000548480 722 ntTSL 23.64□□□□□ -1.835e-19■□□□□ 9.5
DDX55Q8NHQ9 LRRC75A-AS1-201ENST00000460249 773 ntTSL 312.47□□□□□ -0.412e-84■□□□□ 9.5
DDX55Q8NHQ9 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC25.56■■□□□ 1.681e-323■□□□□ 9.5
DDX55Q8NHQ9 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC24.92■■□□□ 1.581e-323■□□□□ 9.5
DDX55Q8NHQ9 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC24.89■■□□□ 1.571e-323■□□□□ 9.5
DDX55Q8NHQ9 MAF1-202ENST00000527058 868 ntTSL 315.11■□□□□ 0.016e-6■□□□□ 9.5
DDX55Q8NHQ9 MAF1-204ENST00000532522 1098 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.016e-6■□□□□ 9.5
DDX55Q8NHQ9 TSPAN9-206ENST00000537971 4284 ntAPPRIS P1 TSL 3 BASIC14.02□□□□□ -0.168e-7■□□□□ 9.5
DDX55Q8NHQ9 TSPAN9-201ENST00000011898 4323 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.288e-7■□□□□ 9.5
DDX55Q8NHQ9 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.666e-7■□□□□ 9.5
DDX55Q8NHQ9 TRIM28-209ENST00000597423 733 ntTSL 317.67■□□□□ 0.421e-6■□□□□ 9.5
DDX55Q8NHQ9 SLC7A8-211ENST00000528860 1499 ntTSL 218.22■□□□□ 0.511e-11■□□□□ 9.5
DDX55Q8NHQ9 SLC7A8-214ENST00000621729 1371 ntTSL 5 BASIC16.1■□□□□ 0.171e-11■□□□□ 9.5
DDX55Q8NHQ9 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC15.53■□□□□ 0.081e-11■□□□□ 9.5
DDX55Q8NHQ9 SLC7A8-205ENST00000453702 1752 ntTSL 1 (best) BASIC14.98□□□□□ -0.011e-11■□□□□ 9.5
DDX55Q8NHQ9 PGGHG-202ENST00000409479 3062 ntTSL 5 BASIC12.95□□□□□ -0.341e-11■□□□□ 9.5
DDX55Q8NHQ9 DNM2-213ENST00000589106 565 ntTSL 212.19□□□□□ -0.462e-22■□□□□ 9.5
DDX55Q8NHQ9 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC22.83■■□□□ 1.252e-6■□□□□ 9.5
DDX55Q8NHQ9 ARL6IP1-204ENST00000562819 578 ntTSL 5 BASIC8.88□□□□□ -0.993e-17■□□□□ 9.5
DDX55Q8NHQ9 ARL6IP1-205ENST00000563861 948 ntTSL 1 (best)7.09□□□□□ -1.273e-17■□□□□ 9.5
DDX55Q8NHQ9 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC28.25■■■□□ 2.114e-11■□□□□ 9.4
DDX55Q8NHQ9 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC23.91■■□□□ 1.424e-11■□□□□ 9.4
DDX55Q8NHQ9 TMED10-206ENST00000557670 917 ntTSL 211.57□□□□□ -0.561e-10■□□□□ 9.4
DDX55Q8NHQ9 SLC3A2-219ENST00000542793 539 ntTSL 29.31□□□□□ -0.924e-11■□□□□ 9.4
DDX55Q8NHQ9 TMED10-205ENST00000556969 1314 ntTSL 26.3□□□□□ -1.41e-10■□□□□ 9.4
DDX55Q8NHQ9 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC21.65■■□□□ 1.064e-9■□□□□ 9.4
DDX55Q8NHQ9 COQ4-201ENST00000300452 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.243e-6■□□□□ 9.4
DDX55Q8NHQ9 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC17.53■□□□□ 0.42e-11■□□□□ 9.4
DDX55Q8NHQ9 ERGIC3-202ENST00000348547 1359 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.012e-11■□□□□ 9.4
DDX55Q8NHQ9 ERGIC3-220ENST00000640748 832 ntTSL 5 BASIC14.54□□□□□ -0.082e-11■□□□□ 9.4
DDX55Q8NHQ9 ERGIC3-206ENST00000416206 1235 ntTSL 514.28□□□□□ -0.122e-11■□□□□ 9.4
DDX55Q8NHQ9 TTR-204ENST00000610404 1040 ntTSL 5 BASIC11.13□□□□□ -0.638e-27■□□□□ 9.4
DDX55Q8NHQ9 TTR-205ENST00000613781 556 ntTSL 5 BASIC11.13□□□□□ -0.638e-27■□□□□ 9.4
DDX55Q8NHQ9 TTR-201ENST00000237014 957 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.988e-27■□□□□ 9.4
DDX55Q8NHQ9 TTR-202ENST00000432547 745 ntTSL 27.89□□□□□ -1.158e-27■□□□□ 9.4
DDX55Q8NHQ9 TTR-203ENST00000541025 956 ntTSL 27.62□□□□□ -1.198e-27■□□□□ 9.4
DDX55Q8NHQ9 HLA-B-254ENST00000497377 917 nt13.87□□□□□ -0.193e-15■□□□□ 9.4
DDX55Q8NHQ9 HLA-B-253ENST00000481849 753 nt11.2□□□□□ -0.623e-15■□□□□ 9.4
DDX55Q8NHQ9 RPS28-202ENST00000449223 1523 ntTSL 222.48■■□□□ 1.191e-6■□□□□ 9.4
DDX55Q8NHQ9 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.671e-6■□□□□ 9.4
DDX55Q8NHQ9 RPS28-204ENST00000602140 912 ntTSL 1 (best)16.45■□□□□ 0.221e-6■□□□□ 9.4
DDX55Q8NHQ9 NCAPH2-209ENST00000522304 521 ntTSL 320.92■□□□□ 0.945e-13■□□□□ 9.4
DDX55Q8NHQ9 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC19.8■□□□□ 0.765e-13■□□□□ 9.4
DDX55Q8NHQ9 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC19.63■□□□□ 0.735e-13■□□□□ 9.4
DDX55Q8NHQ9 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.635e-13■□□□□ 9.4
DDX55Q8NHQ9 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC18.07■□□□□ 0.485e-13■□□□□ 9.4
DDX55Q8NHQ9 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.435e-13■□□□□ 9.4
DDX55Q8NHQ9 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC17.07■□□□□ 0.325e-13■□□□□ 9.4
DDX55Q8NHQ9 FCGRT-205ENST00000593431 582 ntTSL 323.54■■□□□ 1.362e-7■□□□□ 9.4
DDX55Q8NHQ9 FCGRT-209ENST00000596147 383 ntTSL 320.87■□□□□ 0.932e-7■□□□□ 9.4
DDX55Q8NHQ9 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.147e-9■□□□□ 9.4
DDX55Q8NHQ9 FERMT3-208ENST00000545896 911 ntTSL 520.97■□□□□ 0.957e-9■□□□□ 9.4
DDX55Q8NHQ9 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.657e-9■□□□□ 9.4
DDX55Q8NHQ9 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.317e-9■□□□□ 9.4
DDX55Q8NHQ9 SSBP1-203ENST00000463093 600 ntTSL 516.41■□□□□ 0.227e-9■□□□□ 9.4
DDX55Q8NHQ9 SSBP1-206ENST00000467681 630 ntTSL 216.41■□□□□ 0.227e-9■□□□□ 9.4
DDX55Q8NHQ9 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC16.08■□□□□ 0.177e-9■□□□□ 9.4
DDX55Q8NHQ9 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.177e-9■□□□□ 9.4
DDX55Q8NHQ9 SSBP1-210ENST00000481508 989 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.367e-9■□□□□ 9.4
DDX55Q8NHQ9 SSBP1-212ENST00000489378 1434 ntTSL 211.89□□□□□ -0.517e-9■□□□□ 9.4
DDX55Q8NHQ9 SSBP1-208ENST00000469123 662 ntTSL 510.3□□□□□ -0.767e-9■□□□□ 9.4
DDX55Q8NHQ9 SSBP1-205ENST00000465582 731 ntAPPRIS P1 TSL 5 BASIC7.72□□□□□ -1.177e-9■□□□□ 9.4
DDX55Q8NHQ9 SSBP1-204ENST00000465167 517 ntTSL 57.13□□□□□ -1.277e-9■□□□□ 9.4
DDX55Q8NHQ9 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC4.92□□□□□ -1.627e-9■□□□□ 9.4
DDX55Q8NHQ9 SLC25A39-206ENST00000585695 1121 ntTSL 227.98■■■□□ 2.071e-6■□□□□ 9.4
DDX55Q8NHQ9 SLC25A39-205ENST00000585636 561 ntTSL 227.98■■■□□ 2.071e-6■□□□□ 9.4
Retrieved 100 of 15,504 protein–RNA pairs in 148.3 ms