RNA–Protein interactions for RNA: ENST00000602140.1

RPS28-204, Transcript of ribosomal protein S28, humanhuman

TSL 1 (best)

Gene RPS28, Length 912 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-204ENST00000602140 NISCHQ9Y2I1 1504 aa32.92■■■□□ 2.86
RPS28-204ENST00000602140 ABCC9O60706 1549 aa29.52■■■□□ 2.32
RPS28-204ENST00000602140 CCDC180Q9P1Z9 1646 aa29.49■■■□□ 2.31
RPS28-204ENST00000602140 RB1CC1Q8TDY2 1594 aa28.08■■■□□ 2.09
RPS28-204ENST00000602140 NACADO15069 1562 aa27.9■■■□□ 2.06
RPS28-204ENST00000602140 DCAF8L2P0C7V8 631 aa27.84■■■□□ 2.05
RPS28-204ENST00000602140 DNAJC5BQ9UF47 199 aa27.67■■■□□ 2.02
RPS28-204ENST00000602140 PABPN1Q86U42 306 aaKnown RBP eCLIP27.51■■□□□ 1.99
RPS28-204ENST00000602140 MYO15BQ96JP2 1530 aa27.51■■□□□ 1.99
RPS28-204ENST00000602140 UNC13AQ9UPW8 1703 aa27.42■■□□□ 1.98
RPS28-204ENST00000602140 ZCCHC6Q5VYS8 1495 aaKnown RBP27.28■■□□□ 1.96
RPS28-204ENST00000602140 BICRAQ9NZM4 1560 aa27.26■■□□□ 1.96
RPS28-204ENST00000602140 DCAF1Q9Y4B6 1507 aa27.17■■□□□ 1.94
RPS28-204ENST00000602140 SCRIBQ14160 1630 aa26.91■■□□□ 1.9
RPS28-204ENST00000602140 SHROOM4Q9ULL8 1493 aa26.87■■□□□ 1.89
RPS28-204ENST00000602140 CC2D2AQ9P2K1 1620 aa26.65■■□□□ 1.86
RPS28-204ENST00000602140 EIF4G1Q04637 1599 aaKnown RBP26.59■■□□□ 1.85
RPS28-204ENST00000602140 CECR2Q9BXF3 1484 aa26.57■■□□□ 1.84
RPS28-204ENST00000602140 NCAPD3P42695 1498 aa25.76■■□□□ 1.71
RPS28-204ENST00000602140 ATAD2BQ9ULI0 1458 aa25.7■■□□□ 1.7
RPS28-204ENST00000602140 SMARCA4P51532 1647 aa25.66■■□□□ 1.7
RPS28-204ENST00000602140 SMARCA2P51531 1590 aa25.61■■□□□ 1.69
RPS28-204ENST00000602140 HMGXB3Q12766 1538 aa25.56■■□□□ 1.68
RPS28-204ENST00000602140 BAZ1AQ9NRL2 1556 aaPredicted RBP25.54■■□□□ 1.68
RPS28-204ENST00000602140 ERCC6Q03468 1493 aa25.48■■□□□ 1.67
RPS28-204ENST00000602140 BAZ1BQ9UIG0 1483 aaKnown RBP25.45■■□□□ 1.66
RPS28-204ENST00000602140 CUX2O14529 1486 aa25.4■■□□□ 1.66
RPS28-204ENST00000602140 PEG3Q9GZU2 1588 aa25.4■■□□□ 1.66
RPS28-204ENST00000602140 MROH2BQ7Z745 1585 aa25.38■■□□□ 1.65
RPS28-204ENST00000602140 DNAJC5Q9H3Z4 198 aa25.37■■□□□ 1.65
RPS28-204ENST00000602140 NESP48681 1621 aa25.36■■□□□ 1.65
RPS28-204ENST00000602140 LAMC3Q9Y6N6 1575 aa25.17■■□□□ 1.62
RPS28-204ENST00000602140 THOC2Q8NI27 1593 aaKnown RBP25.07■■□□□ 1.6
RPS28-204ENST00000602140 WIZO95785 1651 aa25.07■■□□□ 1.6
RPS28-204ENST00000602140 PDS5BQ9NTI5 1447 aa25.04■■□□□ 1.6
RPS28-204ENST00000602140 KIF21AQ7Z4S6 1674 aa25.01■■□□□ 1.59
RPS28-204ENST00000602140 CADPSQ9ULU8 1353 aa24.99■■□□□ 1.59
RPS28-204ENST00000602140 RSF1Q96T23 1441 aaPredicted RBP24.86■■□□□ 1.57
RPS28-204ENST00000602140 MRC2Q9UBG0 1479 aa24.81■■□□□ 1.56
RPS28-204ENST00000602140 WDR62O43379 1518 aa24.74■■□□□ 1.55
RPS28-204ENST00000602140 TOP2AP11388 1531 aaKnown RBP24.74■■□□□ 1.55
RPS28-204ENST00000602140 CEP164Q9UPV0 1460 aa24.73■■□□□ 1.55
RPS28-204ENST00000602140 FANCD2Q9BXW9 1451 aa24.71■■□□□ 1.55
RPS28-204ENST00000602140 CFTRP13569 1480 aa24.7■■□□□ 1.55
RPS28-204ENST00000602140 URB2Q14146 1524 aaKnown RBP24.5■■□□□ 1.51
RPS28-204ENST00000602140 CCDC88BA6NC98 1476 aa24.48■■□□□ 1.51
RPS28-204ENST00000602140 PRDM2Q13029 1718 aa24.41■■□□□ 1.5
RPS28-204ENST00000602140 TRIM41Q8WV44 630 aa24.31■■□□□ 1.48
RPS28-204ENST00000602140 OSCARQ8IYS5 282 aa24.28■■□□□ 1.48
RPS28-204ENST00000602140 TOPBP1Q92547 1522 aa24.25■■□□□ 1.47
RPS28-204ENST00000602140 IFT140Q96RY7 1462 aa24.23■■□□□ 1.47
RPS28-204ENST00000602140 ZNF608Q9ULD9 1512 aaPredicted RBP24.2■■□□□ 1.46
RPS28-204ENST00000602140 ABCC8Q09428 1581 aa24.18■■□□□ 1.46
RPS28-204ENST00000602140 DNMBPQ6XZF7 1577 aa24.14■■□□□ 1.45
RPS28-204ENST00000602140 EIF4G3O43432 1585 aaKnown RBP24.05■■□□□ 1.44
RPS28-204ENST00000602140 TARBP1Q13395 1621 aaKnown RBP24.01■■□□□ 1.43
RPS28-204ENST00000602140 POLA1P09884 1462 aaPredicted RBP24■■□□□ 1.43
RPS28-204ENST00000602140 AQRO60306 1485 aaKnown RBP eCLIP23.99■■□□□ 1.431e-6■■■□□ 15.8
RPS28-204ENST00000602140 RIMBP3CA6NJZ7 1639 aa23.93■■□□□ 1.42
RPS28-204ENST00000602140 RIMBP3BA6NNM3 1639 aa23.93■■□□□ 1.42
RPS28-204ENST00000602140 RIMBP3Q9UFD9 1639 aa23.93■■□□□ 1.42
RPS28-204ENST00000602140 RAD54L2Q9Y4B4 1467 aa23.92■■□□□ 1.42
RPS28-204ENST00000602140 SOGA1O94964 1423 aa23.9■■□□□ 1.42
RPS28-204ENST00000602140 ARHGEF11O15085 1522 aa23.87■■□□□ 1.41
RPS28-204ENST00000602140 TDRD9Q8NDG6 1382 aaKnown RBP23.86■■□□□ 1.41
RPS28-204ENST00000602140 CHD1O14646 1710 aa23.85■■□□□ 1.41
RPS28-204ENST00000602140 FBLN2P98095 1184 aa23.85■■□□□ 1.41
RPS28-204ENST00000602140 FGD5Q6ZNL6 1462 aa23.85■■□□□ 1.41
RPS28-204ENST00000602140 CUX1P39880 1505 aa23.84■■□□□ 1.41
RPS28-204ENST00000602140 SUPT5HO00267 1087 aaKnown RBP23.83■■□□□ 1.41
RPS28-204ENST00000602140 WDR97A6NE52 1622 aa23.74■■□□□ 1.39
RPS28-204ENST00000602140 SNAPC4Q5SXM2 1469 aa23.74■■□□□ 1.39
RPS28-204ENST00000602140 CYB5RLQ6IPT4 315 aa23.73■■□□□ 1.39
RPS28-204ENST00000602140 GRIN2BQ13224 1484 aa23.68■■□□□ 1.38
RPS28-204ENST00000602140 CHMP7Q8WUX9 453 aaPredicted RBP23.67■■□□□ 1.38
RPS28-204ENST00000602140 MAGI1Q96QZ7 1491 aaPredicted RBP23.67■■□□□ 1.38
RPS28-204ENST00000602140 ARAP1Q96P48 1450 aa23.63■■□□□ 1.37
RPS28-204ENST00000602140 GAPVD1Q14C86 1478 aa23.61■■□□□ 1.37
RPS28-204ENST00000602140 CLASP1Q7Z460 1538 aa23.59■■□□□ 1.37
RPS28-204ENST00000602140 SYNJ2O15056 1496 aa23.59■■□□□ 1.37
RPS28-204ENST00000602140 SYNJ1O43426 1573 aa23.58■■□□□ 1.37
RPS28-204ENST00000602140 ABCA10Q8WWZ4 1543 aa23.58■■□□□ 1.36
RPS28-204ENST00000602140 PBRM1Q86U86 1689 aa23.57■■□□□ 1.36
RPS28-204ENST00000602140 ABCA5Q8WWZ7 1642 aa23.52■■□□□ 1.36
RPS28-204ENST00000602140 WRNQ14191 1432 aaPredicted RBP eCLIP23.5■■□□□ 1.355e-8■■□□□ 13
RPS28-204ENST00000602140 TRHP20396 242 aaPredicted RBP23.46■■□□□ 1.35
RPS28-204ENST00000602140 TOP2BQ02880 1626 aa23.44■■□□□ 1.34
RPS28-204ENST00000602140 BIVM-ERCC5R4GMW8 1640 aa23.44■■□□□ 1.34
RPS28-204ENST00000602140 GRIN2AQ12879 1464 aa23.37■■□□□ 1.33
RPS28-204ENST00000602140 ADAMTS12P58397 1594 aa23.35■■□□□ 1.33
RPS28-204ENST00000602140 FHAD1B1AJZ9 1412 aa23.3■■□□□ 1.32
RPS28-204ENST00000602140 NUP160Q12769 1436 aa23.29■■□□□ 1.32
RPS28-204ENST00000602140 CEP170Q5SW79 1584 aa23.28■■□□□ 1.32
RPS28-204ENST00000602140 ERICH3Q5RHP9 1530 aa23.28■■□□□ 1.32
RPS28-204ENST00000602140 ERCC6L2Q5T890 1561 aa23.24■■□□□ 1.31
RPS28-204ENST00000602140 SHROOM2Q13796 1616 aa23.16■■□□□ 1.3
RPS28-204ENST00000602140 JPH4Q96JJ6 628 aa23.08■■□□□ 1.29
RPS28-204ENST00000602140 PRG4Q92954 1404 aaPredicted RBP23.08■■□□□ 1.28
RPS28-204ENST00000602140 RUSC2Q8N2Y8 1516 aa23.02■■□□□ 1.28
RPS28-204ENST00000602140 IGF1RP08069 1367 aa23.01■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms