RNA–Protein interactions for RNA: ENST00000610404.4

TTR-204, Transcript of transthyretin, humanhuman

TSL 5 BASIC

Gene TTR, Length 1,040 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTR-204ENST00000610404 AEBP2Q6ZN18 517 aaPredicted RBP31.97■■■□□ 2.71
TTR-204ENST00000610404 CHIC1Q5VXU3 224 aa30.41■■■□□ 2.46
TTR-204ENST00000610404 SENP3Q9H4L4 574 aaPredicted RBP27.35■■□□□ 1.97
TTR-204ENST00000610404 PHF23Q9BUL5 403 aaPredicted RBP26.97■■□□□ 1.91
TTR-204ENST00000610404 FOXD1Q16676 465 aa25.44■■□□□ 1.66
TTR-204ENST00000610404 PLPPR3Q6T4P5 718 aa24.34■■□□□ 1.49
TTR-204ENST00000610404 MSH5O43196 834 aa23.87■■□□□ 1.41
TTR-204ENST00000610404 PIAS4Q8N2W9 510 aaPredicted RBP23.79■■□□□ 1.4
TTR-204ENST00000610404 PPP6R1Q9UPN7 881 aa23.76■■□□□ 1.39
TTR-204ENST00000610404 ADRA2BP18089 450 aa23.69■■□□□ 1.38
TTR-204ENST00000610404 POTEDQ86YR6 584 aa23.23■■□□□ 1.31
TTR-204ENST00000610404 NISCHQ9Y2I1 1504 aa22.35■■□□□ 1.17
TTR-204ENST00000610404 SCAF1Q9H7N4 1312 aaKnown RBP21.8■■□□□ 1.08
TTR-204ENST00000610404 MAPK8IP2Q13387 824 aaPredicted RBP21.76■■□□□ 1.07
TTR-204ENST00000610404 DMRT2Q9Y5R5 561 aa21.67■■□□□ 1.06
TTR-204ENST00000610404 PPP4R3CPQ6ZMV5 832 aa21.3■■□□□ 1
TTR-204ENST00000610404 CNKSR2Q8WXI2 1034 aa20.93■□□□□ 0.94
TTR-204ENST00000610404 HOXD11P31277 338 aaPredicted RBP20.89■□□□□ 0.93
TTR-204ENST00000610404 DCAF8L1A6NGE4 600 aa20.77■□□□□ 0.92
TTR-204ENST00000610404 RNF216Q9NWF9 866 aaPredicted RBP20.74■□□□□ 0.91
TTR-204ENST00000610404 NCBP3Q53F19 620 aaKnown RBP20.54■□□□□ 0.88
TTR-204ENST00000610404 CACNB1Q02641 598 aaPredicted RBP20.45■□□□□ 0.86
TTR-204ENST00000610404 ABCC9O60706 1549 aa20.42■□□□□ 0.86
TTR-204ENST00000610404 RNF39Q9H2S5 420 aa20.33■□□□□ 0.85
TTR-204ENST00000610404 DNAJC5BQ9UF47 199 aa20.22■□□□□ 0.83
TTR-204ENST00000610404 NPM3O75607 178 aaKnown RBP20.17■□□□□ 0.82
TTR-204ENST00000610404 CCDC180Q9P1Z9 1646 aa20.13■□□□□ 0.81
TTR-204ENST00000610404 C1QBPQ07021 282 aaKnown RBP20.07■□□□□ 0.8
TTR-204ENST00000610404 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.9■□□□□ 0.78
TTR-204ENST00000610404 KCNA4P22459 653 aa19.77■□□□□ 0.76
TTR-204ENST00000610404 U3KPZ7 1027 aaPredicted RBP19.46■□□□□ 0.71
TTR-204ENST00000610404 RB1CC1Q8TDY2 1594 aa19.28■□□□□ 0.68
TTR-204ENST00000610404 SLC4A2P04920 1241 aa19.26■□□□□ 0.67
TTR-204ENST00000610404 CAPN15O75808 1086 aa19.15■□□□□ 0.66
TTR-204ENST00000610404 SPINK5Q9NQ38 1064 aaPredicted RBP19.15■□□□□ 0.66
TTR-204ENST00000610404 NACADO15069 1562 aa19.09■□□□□ 0.65
TTR-204ENST00000610404 DSG3P32926 999 aa19.04■□□□□ 0.64
TTR-204ENST00000610404 APLP2Q06481 763 aa19.02■□□□□ 0.64
TTR-204ENST00000610404 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.99■□□□□ 0.63
TTR-204ENST00000610404 HNRNPUL2Q1KMD3 747 aaKnown RBP18.99■□□□□ 0.63
TTR-204ENST00000610404 PABPN1Q86U42 306 aaKnown RBP eCLIP18.98■□□□□ 0.63
TTR-204ENST00000610404 DCAF8L2P0C7V8 631 aa18.95■□□□□ 0.62
TTR-204ENST00000610404 UNC13AQ9UPW8 1703 aa18.86■□□□□ 0.61
TTR-204ENST00000610404 SAMD1Q6SPF0 538 aaPredicted RBP18.86■□□□□ 0.61
TTR-204ENST00000610404 ZNF219Q9P2Y4 722 aaPredicted RBP18.85■□□□□ 0.61
TTR-204ENST00000610404 TRHP20396 242 aaPredicted RBP18.84■□□□□ 0.61
TTR-204ENST00000610404 BICRAQ9NZM4 1560 aa18.78■□□□□ 0.6
TTR-204ENST00000610404 MYO15BQ96JP2 1530 aa18.74■□□□□ 0.59
TTR-204ENST00000610404 SLC4A1APQ9BWU0 796 aaKnown RBP18.71■□□□□ 0.59
TTR-204ENST00000610404 MYCNP04198 464 aaPredicted RBP18.7■□□□□ 0.58
TTR-204ENST00000610404 ABCB7O75027 752 aa18.67■□□□□ 0.58
TTR-204ENST00000610404 FOXD4L1Q9NU39 408 aa18.5■□□□□ 0.55
TTR-204ENST00000610404 ZCCHC6Q5VYS8 1495 aaKnown RBP18.47■□□□□ 0.55
TTR-204ENST00000610404 SHROOM4Q9ULL8 1493 aa18.45■□□□□ 0.54
TTR-204ENST00000610404 DCAF1Q9Y4B6 1507 aa18.42■□□□□ 0.54
TTR-204ENST00000610404 CC2D2AQ9P2K1 1620 aa18.41■□□□□ 0.54
TTR-204ENST00000610404 CECR2Q9BXF3 1484 aa18.4■□□□□ 0.54
TTR-204ENST00000610404 SCRIBQ14160 1630 aa18.37■□□□□ 0.53
TTR-204ENST00000610404 POLA2Q14181 598 aa18.34■□□□□ 0.53
TTR-204ENST00000610404 EIF4G1Q04637 1599 aaKnown RBP18.32■□□□□ 0.52
TTR-204ENST00000610404 RBM42Q9BTD8 480 aaKnown RBP18.23■□□□□ 0.51
TTR-204ENST00000610404 POTEHQ6S545 545 aa18.21■□□□□ 0.51
TTR-204ENST00000610404 ATF5Q9Y2D1 282 aaPredicted RBP18.19■□□□□ 0.5
TTR-204ENST00000610404 ZBTB22O15209 634 aa18.14■□□□□ 0.49
TTR-204ENST00000610404 ZBTB12Q9Y330 459 aaPredicted RBP18.03■□□□□ 0.48
TTR-204ENST00000610404 ATXN8OSP0DMR3 200 aa17.97■□□□□ 0.47
TTR-204ENST00000610404 DNAJC5Q9H3Z4 198 aa17.95■□□□□ 0.46
TTR-204ENST00000610404 AKT1S1Q96B36 256 aa17.79■□□□□ 0.44
TTR-204ENST00000610404 CHRDL2Q6WN34 429 aa17.77■□□□□ 0.44
TTR-204ENST00000610404 OSCARQ8IYS5 282 aa17.73■□□□□ 0.43
TTR-204ENST00000610404 CUX2O14529 1486 aa17.66■□□□□ 0.42
TTR-204ENST00000610404 NCAPD3P42695 1498 aa17.64■□□□□ 0.41
TTR-204ENST00000610404 ERCC6Q03468 1493 aa17.61■□□□□ 0.41
TTR-204ENST00000610404 REM2Q8IYK8 340 aaPredicted RBP17.59■□□□□ 0.41
TTR-204ENST00000610404 FBLN2P98095 1184 aa17.58■□□□□ 0.4
TTR-204ENST00000610404 ATAD2BQ9ULI0 1458 aa17.57■□□□□ 0.4
TTR-204ENST00000610404 HMGXB3Q12766 1538 aa17.49■□□□□ 0.39
TTR-204ENST00000610404 NESP48681 1621 aa17.49■□□□□ 0.39
TTR-204ENST00000610404 SMARCA4P51532 1647 aa17.48■□□□□ 0.39
TTR-204ENST00000610404 SMARCA2P51531 1590 aa17.47■□□□□ 0.39
TTR-204ENST00000610404 SPDYE2BA6NHP3 402 aa17.45■□□□□ 0.38
TTR-204ENST00000610404 SPDYE6P0CI01 402 aa17.45■□□□□ 0.38
TTR-204ENST00000610404 SPDYE2Q495Y8 402 aa17.45■□□□□ 0.38
TTR-204ENST00000610404 PITPNM1O00562 1244 aa17.38■□□□□ 0.37
TTR-204ENST00000610404 BAZ1BQ9UIG0 1483 aaKnown RBP17.37■□□□□ 0.37
TTR-204ENST00000610404 MKRN4PQ13434 485 aaPredicted RBP17.37■□□□□ 0.37
TTR-204ENST00000610404 CSRNP3Q8WYN3 585 aa17.35■□□□□ 0.37
TTR-204ENST00000610404 BAZ1AQ9NRL2 1556 aaPredicted RBP17.35■□□□□ 0.37
TTR-204ENST00000610404 THOC2Q8NI27 1593 aaKnown RBP17.34■□□□□ 0.37
TTR-204ENST00000610404 PIP4P2Q8N4L2 257 aa17.33■□□□□ 0.36
TTR-204ENST00000610404 PEG3Q9GZU2 1588 aa17.31■□□□□ 0.36
TTR-204ENST00000610404 LAMC3Q9Y6N6 1575 aa17.27■□□□□ 0.35
TTR-204ENST00000610404 FXR2P51116 673 aaKnown RBP eCLIP17.26■□□□□ 0.35
TTR-204ENST00000610404 MROH2BQ7Z745 1585 aa17.24■□□□□ 0.35
TTR-204ENST00000610404 ZNF692Q9BU19 519 aaPredicted RBP17.23■□□□□ 0.35
TTR-204ENST00000610404 KIF21AQ7Z4S6 1674 aa17.22■□□□□ 0.35
TTR-204ENST00000610404 SSUH2Q9Y2M2 353 aa17.19■□□□□ 0.34
TTR-204ENST00000610404 PDS5BQ9NTI5 1447 aa17.17■□□□□ 0.34
TTR-204ENST00000610404 SPDYE1Q8NFV5 336 aaPredicted RBP17.15■□□□□ 0.34
TTR-204ENST00000610404 EHMT2Q96KQ7 1210 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms