RNA–Protein interactions for RNA: ENST00000612337.4

SSBP1-215, Transcript of single stranded DNA binding protein 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene SSBP1, Length 884 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP1-215ENST00000612337 NISCHQ9Y2I1 1504 aa44.5■■■■■ 4.71
SSBP1-215ENST00000612337 CCDC180Q9P1Z9 1646 aa39.9■■■■□ 3.98
SSBP1-215ENST00000612337 ABCC9O60706 1549 aa39.77■■■■□ 3.96
SSBP1-215ENST00000612337 RB1CC1Q8TDY2 1594 aa37.93■■■■□ 3.66
SSBP1-215ENST00000612337 NACADO15069 1562 aa37.71■■■■□ 3.63
SSBP1-215ENST00000612337 DCAF8L2P0C7V8 631 aa37.47■■■■□ 3.59
SSBP1-215ENST00000612337 DNAJC5BQ9UF47 199 aa37.24■■■■□ 3.55
SSBP1-215ENST00000612337 MYO15BQ96JP2 1530 aa37.24■■■■□ 3.55
SSBP1-215ENST00000612337 UNC13AQ9UPW8 1703 aa37.06■■■■□ 3.52
SSBP1-215ENST00000612337 PABPN1Q86U42 306 aaKnown RBP eCLIP37.04■■■■□ 3.52
SSBP1-215ENST00000612337 ZCCHC6Q5VYS8 1495 aaKnown RBP36.9■■■■□ 3.5
SSBP1-215ENST00000612337 BICRAQ9NZM4 1560 aa36.82■■■■□ 3.48
SSBP1-215ENST00000612337 DCAF1Q9Y4B6 1507 aa36.79■■■■□ 3.48
SSBP1-215ENST00000612337 SHROOM4Q9ULL8 1493 aa36.38■■■■□ 3.41
SSBP1-215ENST00000612337 SCRIBQ14160 1630 aa36.33■■■■□ 3.41
SSBP1-215ENST00000612337 CC2D2AQ9P2K1 1620 aa35.96■■■■□ 3.35
SSBP1-215ENST00000612337 EIF4G1Q04637 1599 aaKnown RBP35.91■■■■□ 3.34
SSBP1-215ENST00000612337 CECR2Q9BXF3 1484 aa35.85■■■■□ 3.33
SSBP1-215ENST00000612337 NCAPD3P42695 1498 aa34.81■■■■□ 3.16
SSBP1-215ENST00000612337 ATAD2BQ9ULI0 1458 aa34.71■■■■□ 3.15
SSBP1-215ENST00000612337 SMARCA4P51532 1647 aa34.69■■■■□ 3.14
SSBP1-215ENST00000612337 SMARCA2P51531 1590 aa34.62■■■■□ 3.13
SSBP1-215ENST00000612337 HMGXB3Q12766 1538 aa34.56■■■■□ 3.12
SSBP1-215ENST00000612337 BAZ1AQ9NRL2 1556 aaPredicted RBP34.53■■■■□ 3.12
SSBP1-215ENST00000612337 PEG3Q9GZU2 1588 aa34.37■■■■□ 3.09
SSBP1-215ENST00000612337 BAZ1BQ9UIG0 1483 aaKnown RBP34.37■■■■□ 3.09
SSBP1-215ENST00000612337 ERCC6Q03468 1493 aa34.35■■■■□ 3.09
SSBP1-215ENST00000612337 CUX2O14529 1486 aa34.29■■■■□ 3.08
SSBP1-215ENST00000612337 MROH2BQ7Z745 1585 aa34.27■■■■□ 3.08
SSBP1-215ENST00000612337 NESP48681 1621 aa34.19■■■■□ 3.06
SSBP1-215ENST00000612337 DNAJC5Q9H3Z4 198 aa34.15■■■■□ 3.06
SSBP1-215ENST00000612337 LAMC3Q9Y6N6 1575 aa34.01■■■■□ 3.03
SSBP1-215ENST00000612337 THOC2Q8NI27 1593 aaKnown RBP33.85■■■■□ 3.01
SSBP1-215ENST00000612337 WIZO95785 1651 aa33.85■■■■□ 3.01
SSBP1-215ENST00000612337 PDS5BQ9NTI5 1447 aa33.81■■■■□ 3
SSBP1-215ENST00000612337 KIF21AQ7Z4S6 1674 aa33.77■■■■□ 3
SSBP1-215ENST00000612337 CADPSQ9ULU8 1353 aa33.75■■■□□ 2.99
SSBP1-215ENST00000612337 RSF1Q96T23 1441 aaPredicted RBP33.6■■■□□ 2.97
SSBP1-215ENST00000612337 MRC2Q9UBG0 1479 aa33.5■■■□□ 2.95
SSBP1-215ENST00000612337 TOP2AP11388 1531 aaKnown RBP33.46■■■□□ 2.95
SSBP1-215ENST00000612337 WDR62O43379 1518 aa33.43■■■□□ 2.94
SSBP1-215ENST00000612337 CFTRP13569 1480 aa33.39■■■□□ 2.94
SSBP1-215ENST00000612337 CEP164Q9UPV0 1460 aa33.38■■■□□ 2.93
SSBP1-215ENST00000612337 FANCD2Q9BXW9 1451 aa33.35■■■□□ 2.93
SSBP1-215ENST00000612337 URB2Q14146 1524 aaKnown RBP33.07■■■□□ 2.89
SSBP1-215ENST00000612337 CCDC88BA6NC98 1476 aa33.07■■■□□ 2.88
SSBP1-215ENST00000612337 PRDM2Q13029 1718 aa33.05■■■□□ 2.88
SSBP1-215ENST00000612337 TOPBP1Q92547 1522 aa32.73■■■□□ 2.83
SSBP1-215ENST00000612337 IFT140Q96RY7 1462 aa32.73■■■□□ 2.83
SSBP1-215ENST00000612337 OSCARQ8IYS5 282 aa32.72■■■□□ 2.83
SSBP1-215ENST00000612337 ABCC8Q09428 1581 aa32.7■■■□□ 2.82
SSBP1-215ENST00000612337 TRIM41Q8WV44 630 aa32.65■■■□□ 2.82
SSBP1-215ENST00000612337 ZNF608Q9ULD9 1512 aaPredicted RBP32.64■■■□□ 2.82
SSBP1-215ENST00000612337 DNMBPQ6XZF7 1577 aa32.62■■■□□ 2.81
SSBP1-215ENST00000612337 EIF4G3O43432 1585 aaKnown RBP32.47■■■□□ 2.79
SSBP1-215ENST00000612337 TARBP1Q13395 1621 aaKnown RBP32.44■■■□□ 2.78
SSBP1-215ENST00000612337 POLA1P09884 1462 aaPredicted RBP32.42■■■□□ 2.78
SSBP1-215ENST00000612337 AQRO60306 1485 aaKnown RBP eCLIP32.36■■■□□ 2.774e-9■□□□□ 8.1
SSBP1-215ENST00000612337 RIMBP3CA6NJZ7 1639 aa32.28■■■□□ 2.76
SSBP1-215ENST00000612337 RIMBP3BA6NNM3 1639 aa32.28■■■□□ 2.76
SSBP1-215ENST00000612337 RIMBP3Q9UFD9 1639 aa32.28■■■□□ 2.76
SSBP1-215ENST00000612337 RAD54L2Q9Y4B4 1467 aa32.27■■■□□ 2.76
SSBP1-215ENST00000612337 SOGA1O94964 1423 aa32.26■■■□□ 2.75
SSBP1-215ENST00000612337 FGD5Q6ZNL6 1462 aa32.21■■■□□ 2.75
SSBP1-215ENST00000612337 CHD1O14646 1710 aa32.2■■■□□ 2.75
SSBP1-215ENST00000612337 CUX1P39880 1505 aa32.2■■■□□ 2.74
SSBP1-215ENST00000612337 ARHGEF11O15085 1522 aa32.19■■■□□ 2.74
SSBP1-215ENST00000612337 TDRD9Q8NDG6 1382 aaKnown RBP32.17■■■□□ 2.74
SSBP1-215ENST00000612337 WDR97A6NE52 1622 aa32.15■■■□□ 2.74
SSBP1-215ENST00000612337 SUPT5HO00267 1087 aaKnown RBP32.14■■■□□ 2.74
SSBP1-215ENST00000612337 FBLN2P98095 1184 aa32.11■■■□□ 2.73
SSBP1-215ENST00000612337 SNAPC4Q5SXM2 1469 aa32.03■■■□□ 2.72
SSBP1-215ENST00000612337 MAGI1Q96QZ7 1491 aaPredicted RBP31.98■■■□□ 2.71
SSBP1-215ENST00000612337 GRIN2BQ13224 1484 aa31.97■■■□□ 2.71
SSBP1-215ENST00000612337 CYB5RLQ6IPT4 315 aa31.93■■■□□ 2.7
SSBP1-215ENST00000612337 CHMP7Q8WUX9 453 aaPredicted RBP31.91■■■□□ 2.7
SSBP1-215ENST00000612337 ARAP1Q96P48 1450 aa31.88■■■□□ 2.69
SSBP1-215ENST00000612337 ABCA10Q8WWZ4 1543 aa31.87■■■□□ 2.69
SSBP1-215ENST00000612337 GAPVD1Q14C86 1478 aa31.87■■■□□ 2.69
SSBP1-215ENST00000612337 CLASP1Q7Z460 1538 aa31.86■■■□□ 2.69
SSBP1-215ENST00000612337 SYNJ2O15056 1496 aa31.86■■■□□ 2.69
SSBP1-215ENST00000612337 SYNJ1O43426 1573 aa31.85■■■□□ 2.69
SSBP1-215ENST00000612337 PBRM1Q86U86 1689 aa31.84■■■□□ 2.69
SSBP1-215ENST00000612337 ABCA5Q8WWZ7 1642 aa31.81■■■□□ 2.68
SSBP1-215ENST00000612337 WRNQ14191 1432 aaPredicted RBP eCLIP31.75■■■□□ 2.671e-7■□□□□ 10.2
SSBP1-215ENST00000612337 TOP2BQ02880 1626 aa31.71■■■□□ 2.67
SSBP1-215ENST00000612337 BIVM-ERCC5R4GMW8 1640 aa31.71■■■□□ 2.67
SSBP1-215ENST00000612337 GRIN2AQ12879 1464 aa31.56■■■□□ 2.64
SSBP1-215ENST00000612337 ADAMTS12P58397 1594 aa31.56■■■□□ 2.64
SSBP1-215ENST00000612337 TRHP20396 242 aaPredicted RBP31.53■■■□□ 2.64
SSBP1-215ENST00000612337 ERICH3Q5RHP9 1530 aa31.48■■■□□ 2.63
SSBP1-215ENST00000612337 FHAD1B1AJZ9 1412 aa31.48■■■□□ 2.63
SSBP1-215ENST00000612337 NUP160Q12769 1436 aa31.47■■■□□ 2.63
SSBP1-215ENST00000612337 CEP170Q5SW79 1584 aa31.44■■■□□ 2.62
SSBP1-215ENST00000612337 ERCC6L2Q5T890 1561 aa31.34■■■□□ 2.61
SSBP1-215ENST00000612337 SHROOM2Q13796 1616 aa31.31■■■□□ 2.6
SSBP1-215ENST00000612337 JPH4Q96JJ6 628 aa31.13■■■□□ 2.57
SSBP1-215ENST00000612337 PRG4Q92954 1404 aaPredicted RBP31.13■■■□□ 2.57
SSBP1-215ENST00000612337 RUSC2Q8N2Y8 1516 aa31.11■■■□□ 2.57
SSBP1-215ENST00000612337 KIF27Q86VH2 1401 aa31.1■■■□□ 2.57
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms