RNA–Protein interactions for RNA: ENST00000265304.10

SSBP1-201, Transcript of single stranded DNA binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SSBP1, Length 687 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP1-201ENST00000265304 NISCHQ9Y2I1 1504 aa34.19■■■■□ 3.06
SSBP1-201ENST00000265304 CCDC180Q9P1Z9 1646 aa30.26■■■□□ 2.44
SSBP1-201ENST00000265304 ABCC9O60706 1549 aa29■■■□□ 2.23
SSBP1-201ENST00000265304 ZCCHC6Q5VYS8 1495 aaKnown RBP28.56■■■□□ 2.16
SSBP1-201ENST00000265304 MYO15BQ96JP2 1530 aa28.42■■■□□ 2.14
SSBP1-201ENST00000265304 DCAF1Q9Y4B6 1507 aa28.42■■■□□ 2.14
SSBP1-201ENST00000265304 NACADO15069 1562 aa28.33■■■□□ 2.13
SSBP1-201ENST00000265304 RB1CC1Q8TDY2 1594 aa28.2■■■□□ 2.11
SSBP1-201ENST00000265304 DCAF8L2P0C7V8 631 aa28.1■■■□□ 2.09
SSBP1-201ENST00000265304 UNC13AQ9UPW8 1703 aa27.64■■■□□ 2.01
SSBP1-201ENST00000265304 SCRIBQ14160 1630 aa27.45■■□□□ 1.98
SSBP1-201ENST00000265304 BICRAQ9NZM4 1560 aa27.39■■□□□ 1.98
SSBP1-201ENST00000265304 SHROOM4Q9ULL8 1493 aa27.21■■□□□ 1.95
SSBP1-201ENST00000265304 PABPN1Q86U42 306 aaKnown RBP eCLIP27.14■■□□□ 1.94
SSBP1-201ENST00000265304 EIF4G1Q04637 1599 aaKnown RBP26.58■■□□□ 1.85
SSBP1-201ENST00000265304 CECR2Q9BXF3 1484 aa26.52■■□□□ 1.84
SSBP1-201ENST00000265304 BAZ1AQ9NRL2 1556 aaPredicted RBP26.45■■□□□ 1.82
SSBP1-201ENST00000265304 SMARCA4P51532 1647 aa26.41■■□□□ 1.82
SSBP1-201ENST00000265304 CC2D2AQ9P2K1 1620 aa26.35■■□□□ 1.81
SSBP1-201ENST00000265304 DNAJC5BQ9UF47 199 aa26.33■■□□□ 1.81
SSBP1-201ENST00000265304 MROH2BQ7Z745 1585 aa26.3■■□□□ 1.8
SSBP1-201ENST00000265304 PEG3Q9GZU2 1588 aa26.27■■□□□ 1.8
SSBP1-201ENST00000265304 RSF1Q96T23 1441 aaPredicted RBP26.18■■□□□ 1.78
SSBP1-201ENST00000265304 ATAD2BQ9ULI0 1458 aa26.17■■□□□ 1.78
SSBP1-201ENST00000265304 SMARCA2P51531 1590 aa26.17■■□□□ 1.78
SSBP1-201ENST00000265304 NCAPD3P42695 1498 aa26.16■■□□□ 1.78
SSBP1-201ENST00000265304 HMGXB3Q12766 1538 aa26.04■■□□□ 1.76
SSBP1-201ENST00000265304 WIZO95785 1651 aa26.03■■□□□ 1.76
SSBP1-201ENST00000265304 AEBP2Q6ZN18 517 aaPredicted RBP25.93■■□□□ 1.74
SSBP1-201ENST00000265304 BAZ1BQ9UIG0 1483 aaKnown RBP25.91■■□□□ 1.74
SSBP1-201ENST00000265304 TOP2AP11388 1531 aaKnown RBP25.81■■□□□ 1.72
SSBP1-201ENST00000265304 SUPT5HO00267 1087 aaKnown RBP25.61■■□□□ 1.69
SSBP1-201ENST00000265304 CCDC88BA6NC98 1476 aa25.49■■□□□ 1.67
SSBP1-201ENST00000265304 LAMC3Q9Y6N6 1575 aa25.36■■□□□ 1.65
SSBP1-201ENST00000265304 CADPSQ9ULU8 1353 aa25.35■■□□□ 1.65
SSBP1-201ENST00000265304 CFTRP13569 1480 aa25.33■■□□□ 1.65
SSBP1-201ENST00000265304 NESP48681 1621 aa25.26■■□□□ 1.63
SSBP1-201ENST00000265304 PRDM2Q13029 1718 aa25.2■■□□□ 1.63
SSBP1-201ENST00000265304 PDS5BQ9NTI5 1447 aa25.12■■□□□ 1.61
SSBP1-201ENST00000265304 KIF21AQ7Z4S6 1674 aa25.02■■□□□ 1.6
SSBP1-201ENST00000265304 FANCD2Q9BXW9 1451 aa25.02■■□□□ 1.6
SSBP1-201ENST00000265304 ERCC6Q03468 1493 aa24.93■■□□□ 1.58
SSBP1-201ENST00000265304 CEP164Q9UPV0 1460 aa24.93■■□□□ 1.58
SSBP1-201ENST00000265304 THOC2Q8NI27 1593 aaKnown RBP24.86■■□□□ 1.57
SSBP1-201ENST00000265304 MRC2Q9UBG0 1479 aa24.83■■□□□ 1.56
SSBP1-201ENST00000265304 WDR62O43379 1518 aa24.78■■□□□ 1.56
SSBP1-201ENST00000265304 ABCC8Q09428 1581 aa24.77■■□□□ 1.56
SSBP1-201ENST00000265304 URB2Q14146 1524 aaKnown RBP24.76■■□□□ 1.55
SSBP1-201ENST00000265304 CHIC1Q5VXU3 224 aa24.72■■□□□ 1.55
SSBP1-201ENST00000265304 DNMBPQ6XZF7 1577 aa24.71■■□□□ 1.55
SSBP1-201ENST00000265304 TOPBP1Q92547 1522 aa24.69■■□□□ 1.54
SSBP1-201ENST00000265304 CUX2O14529 1486 aa24.68■■□□□ 1.54
SSBP1-201ENST00000265304 CUX1P39880 1505 aa24.65■■□□□ 1.54
SSBP1-201ENST00000265304 WRNQ14191 1432 aaPredicted RBP eCLIP24.62■■□□□ 1.531e-7■□□□□ 10.2
SSBP1-201ENST00000265304 BIVM-ERCC5R4GMW8 1640 aa24.6■■□□□ 1.53
SSBP1-201ENST00000265304 TOP2BQ02880 1626 aa24.59■■□□□ 1.53
SSBP1-201ENST00000265304 SYNJ1O43426 1573 aa24.54■■□□□ 1.52
SSBP1-201ENST00000265304 POLA1P09884 1462 aaPredicted RBP24.51■■□□□ 1.51
SSBP1-201ENST00000265304 FGD5Q6ZNL6 1462 aa24.47■■□□□ 1.51
SSBP1-201ENST00000265304 TARBP1Q13395 1621 aaKnown RBP24.44■■□□□ 1.5
SSBP1-201ENST00000265304 IFT140Q96RY7 1462 aa24.43■■□□□ 1.5
SSBP1-201ENST00000265304 SOGA1O94964 1423 aa24.38■■□□□ 1.49
SSBP1-201ENST00000265304 WDR97A6NE52 1622 aa24.34■■□□□ 1.49
SSBP1-201ENST00000265304 RAD54L2Q9Y4B4 1467 aa24.33■■□□□ 1.49
SSBP1-201ENST00000265304 ABCA10Q8WWZ4 1543 aa24.33■■□□□ 1.49
SSBP1-201ENST00000265304 TRIM41Q8WV44 630 aa24.24■■□□□ 1.47
SSBP1-201ENST00000265304 ZNF608Q9ULD9 1512 aaPredicted RBP24.24■■□□□ 1.47
SSBP1-201ENST00000265304 ABCA5Q8WWZ7 1642 aa24.19■■□□□ 1.46
SSBP1-201ENST00000265304 EIF4G3O43432 1585 aaKnown RBP24.17■■□□□ 1.46
SSBP1-201ENST00000265304 TDRD9Q8NDG6 1382 aaKnown RBP24.16■■□□□ 1.46
SSBP1-201ENST00000265304 AQRO60306 1485 aaKnown RBP eCLIP24.14■■□□□ 1.464e-9■□□□□ 8.1
SSBP1-201ENST00000265304 GAPVD1Q14C86 1478 aa24.12■■□□□ 1.45
SSBP1-201ENST00000265304 KIF27Q86VH2 1401 aa24.08■■□□□ 1.44
SSBP1-201ENST00000265304 GRIN2BQ13224 1484 aa24.07■■□□□ 1.44
SSBP1-201ENST00000265304 PBRM1Q86U86 1689 aa24.05■■□□□ 1.44
SSBP1-201ENST00000265304 ERICH3Q5RHP9 1530 aa24.05■■□□□ 1.44
SSBP1-201ENST00000265304 MAGI1Q96QZ7 1491 aaPredicted RBP24■■□□□ 1.43
SSBP1-201ENST00000265304 IGF1RP08069 1367 aa23.99■■□□□ 1.43
SSBP1-201ENST00000265304 RUSC2Q8N2Y8 1516 aa23.97■■□□□ 1.43
SSBP1-201ENST00000265304 EEA1Q15075 1411 aa23.95■■□□□ 1.42
SSBP1-201ENST00000265304 SNAPC4Q5SXM2 1469 aa23.92■■□□□ 1.42
SSBP1-201ENST00000265304 CUL7Q14999 1698 aa23.89■■□□□ 1.42
SSBP1-201ENST00000265304 ADAMTS12P58397 1594 aa23.88■■□□□ 1.41
SSBP1-201ENST00000265304 SYNJ2O15056 1496 aa23.87■■□□□ 1.41
SSBP1-201ENST00000265304 FHAD1B1AJZ9 1412 aa23.87■■□□□ 1.41
SSBP1-201ENST00000265304 CSRNP3Q8WYN3 585 aa23.81■■□□□ 1.4
SSBP1-201ENST00000265304 CHD1O14646 1710 aa23.81■■□□□ 1.4
SSBP1-201ENST00000265304 PRXQ9BXM0 1461 aa23.8■■□□□ 1.4
SSBP1-201ENST00000265304 CARMIL1Q5VZK9 1371 aa23.79■■□□□ 1.4
SSBP1-201ENST00000265304 GRIN2AQ12879 1464 aa23.75■■□□□ 1.39
SSBP1-201ENST00000265304 CHMP7Q8WUX9 453 aaPredicted RBP23.74■■□□□ 1.39
SSBP1-201ENST00000265304 RAPGEF2Q9Y4G8 1499 aa23.71■■□□□ 1.39
SSBP1-201ENST00000265304 NUP160Q12769 1436 aa23.69■■□□□ 1.38
SSBP1-201ENST00000265304 OSCARQ8IYS5 282 aa23.68■■□□□ 1.38
SSBP1-201ENST00000265304 KIF21BO75037 1637 aa23.66■■□□□ 1.38
SSBP1-201ENST00000265304 FBLN2P98095 1184 aa23.63■■□□□ 1.37
SSBP1-201ENST00000265304 CEP170Q5SW79 1584 aa23.62■■□□□ 1.37
SSBP1-201ENST00000265304 CLASP1Q7Z460 1538 aa23.61■■□□□ 1.37
SSBP1-201ENST00000265304 FAM9AQ8IZU1 332 aaPredicted RBP23.6■■□□□ 1.37
SSBP1-201ENST00000265304 KIAA0586Q9BVV6 1533 aa23.55■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms