RNA–Protein interactions for RNA: ENST00000011898.9

TSPAN9-201, Transcript of tetraspanin 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TSPAN9, Length 4,323 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN9-201ENST00000011898 NISCHQ9Y2I1 1504 aa24.52■■□□□ 1.52
TSPAN9-201ENST00000011898 CCDC180Q9P1Z9 1646 aa21.46■■□□□ 1.03
TSPAN9-201ENST00000011898 DCAF8L2P0C7V8 631 aa21.05■□□□□ 0.96
TSPAN9-201ENST00000011898 ABCC9O60706 1549 aa20.64■□□□□ 0.89
TSPAN9-201ENST00000011898 ZCCHC6Q5VYS8 1495 aaKnown RBP20.52■□□□□ 0.87
TSPAN9-201ENST00000011898 SUPT5HO00267 1087 aaKnown RBP20.29■□□□□ 0.84
TSPAN9-201ENST00000011898 DCAF1Q9Y4B6 1507 aa20.24■□□□□ 0.83
TSPAN9-201ENST00000011898 NACADO15069 1562 aa20.13■□□□□ 0.81
TSPAN9-201ENST00000011898 SHROOM4Q9ULL8 1493 aa20.12■□□□□ 0.81
TSPAN9-201ENST00000011898 MYO15BQ96JP2 1530 aa20.08■□□□□ 0.81
TSPAN9-201ENST00000011898 RB1CC1Q8TDY2 1594 aa20.06■□□□□ 0.8
TSPAN9-201ENST00000011898 PELP1Q8IZL8 1130 aaKnown RBP19.82■□□□□ 0.76
TSPAN9-201ENST00000011898 SCRIBQ14160 1630 aa19.78■□□□□ 0.76
TSPAN9-201ENST00000011898 MYT1Q01538 1121 aa19.53■□□□□ 0.72
TSPAN9-201ENST00000011898 PABPN1Q86U42 306 aaKnown RBP eCLIP19.47■□□□□ 0.71
TSPAN9-201ENST00000011898 UNC13AQ9UPW8 1703 aa19.3■□□□□ 0.68
TSPAN9-201ENST00000011898 EHMT2Q96KQ7 1210 aa19.22■□□□□ 0.67
TSPAN9-201ENST00000011898 BICRAQ9NZM4 1560 aa19.18■□□□□ 0.66
TSPAN9-201ENST00000011898 PCGF6Q9BYE7 350 aa19.18■□□□□ 0.66
TSPAN9-201ENST00000011898 BAZ1AQ9NRL2 1556 aaPredicted RBP19.03■□□□□ 0.64
TSPAN9-201ENST00000011898 CECR2Q9BXF3 1484 aa19.02■□□□□ 0.64
TSPAN9-201ENST00000011898 FAM9AQ8IZU1 332 aaPredicted RBP18.99■□□□□ 0.63
TSPAN9-201ENST00000011898 RSF1Q96T23 1441 aaPredicted RBP18.94■□□□□ 0.62
TSPAN9-201ENST00000011898 MROH2BQ7Z745 1585 aa18.89■□□□□ 0.61
TSPAN9-201ENST00000011898 SMARCA4P51532 1647 aa18.88■□□□□ 0.61
TSPAN9-201ENST00000011898 CENPBP07199 599 aaPredicted RBP18.79■□□□□ 0.6
TSPAN9-201ENST00000011898 EIF4G1Q04637 1599 aaKnown RBP18.78■□□□□ 0.6
TSPAN9-201ENST00000011898 TRIM41Q8WV44 630 aa18.77■□□□□ 0.59
TSPAN9-201ENST00000011898 SMARCA2P51531 1590 aa18.75■□□□□ 0.59
TSPAN9-201ENST00000011898 CHIC1Q5VXU3 224 aa18.72■□□□□ 0.59
TSPAN9-201ENST00000011898 HRCP23327 699 aa18.71■□□□□ 0.59
TSPAN9-201ENST00000011898 WIZO95785 1651 aa18.71■□□□□ 0.59
TSPAN9-201ENST00000011898 BAZ1BQ9UIG0 1483 aaKnown RBP18.68■□□□□ 0.58
TSPAN9-201ENST00000011898 ATAD2BQ9ULI0 1458 aa18.66■□□□□ 0.58
TSPAN9-201ENST00000011898 TOP2AP11388 1531 aaKnown RBP18.6■□□□□ 0.57
TSPAN9-201ENST00000011898 TTBK1Q5TCY1 1321 aaPredicted RBP18.59■□□□□ 0.57
TSPAN9-201ENST00000011898 PEG3Q9GZU2 1588 aa18.57■□□□□ 0.56
TSPAN9-201ENST00000011898 CC2D2AQ9P2K1 1620 aa18.56■□□□□ 0.56
TSPAN9-201ENST00000011898 LOC105371045A0A1W2PR82 267 aa18.55■□□□□ 0.56
TSPAN9-201ENST00000011898 NCAPD3P42695 1498 aa18.54■□□□□ 0.56
TSPAN9-201ENST00000011898 ZEB1P37275 1124 aaPredicted RBP18.54■□□□□ 0.56
TSPAN9-201ENST00000011898 PPARGC1BQ86YN6 1023 aaKnown RBP18.5■□□□□ 0.55
TSPAN9-201ENST00000011898 HMGXB3Q12766 1538 aa18.49■□□□□ 0.55
TSPAN9-201ENST00000011898 APLP2Q06481 763 aa18.48■□□□□ 0.55
TSPAN9-201ENST00000011898 ERICH6Q7L0X2 663 aa18.48■□□□□ 0.55
TSPAN9-201ENST00000011898 TRIM26Q12899 539 aaPredicted RBP18.44■□□□□ 0.54
TSPAN9-201ENST00000011898 CCER1Q8TC90 406 aaPredicted RBP18.4■□□□□ 0.54
TSPAN9-201ENST00000011898 CCDC88BA6NC98 1476 aa18.39■□□□□ 0.53
TSPAN9-201ENST00000011898 YTHDC1Q96MU7 727 aaKnown RBP18.36■□□□□ 0.53
TSPAN9-201ENST00000011898 UBTFP17480 764 aaKnown RBP18.27■□□□□ 0.52
TSPAN9-201ENST00000011898 RANGAP1P46060 587 aaPredicted RBP18.26■□□□□ 0.51
TSPAN9-201ENST00000011898 DNAJC5BQ9UF47 199 aa18.21■□□□□ 0.51
TSPAN9-201ENST00000011898 CADPSQ9ULU8 1353 aa18.14■□□□□ 0.49
TSPAN9-201ENST00000011898 CFTRP13569 1480 aa18.06■□□□□ 0.48
TSPAN9-201ENST00000011898 GTF3C3Q9Y5Q9 886 aa18.01■□□□□ 0.47
TSPAN9-201ENST00000011898 PDS5BQ9NTI5 1447 aa18.01■□□□□ 0.47
TSPAN9-201ENST00000011898 LAMC3Q9Y6N6 1575 aa17.98■□□□□ 0.47
TSPAN9-201ENST00000011898 WRNQ14191 1432 aaPredicted RBP eCLIP17.98■□□□□ 0.47
TSPAN9-201ENST00000011898 FANCD2Q9BXW9 1451 aa17.93■□□□□ 0.46
TSPAN9-201ENST00000011898 NESP48681 1621 aa17.93■□□□□ 0.46
TSPAN9-201ENST00000011898 ABCC8Q09428 1581 aa17.92■□□□□ 0.46
TSPAN9-201ENST00000011898 ERCC6Q03468 1493 aa17.9■□□□□ 0.46
TSPAN9-201ENST00000011898 CEP164Q9UPV0 1460 aa17.9■□□□□ 0.46
TSPAN9-201ENST00000011898 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.88■□□□□ 0.45
TSPAN9-201ENST00000011898 NEFLP07196 543 aa17.87■□□□□ 0.45
TSPAN9-201ENST00000011898 PRDM2Q13029 1718 aa17.85■□□□□ 0.45
TSPAN9-201ENST00000011898 ATP1B4Q9UN42 357 aaPredicted RBP17.84■□□□□ 0.45
TSPAN9-201ENST00000011898 HNRNPUL2Q1KMD3 747 aaKnown RBP17.78■□□□□ 0.44
TSPAN9-201ENST00000011898 SCAF1Q9H7N4 1312 aaKnown RBP17.73■□□□□ 0.43
TSPAN9-201ENST00000011898 ACIN1Q9UKV3 1341 aaKnown RBP17.73■□□□□ 0.43
TSPAN9-201ENST00000011898 SYNJ1O43426 1573 aa17.71■□□□□ 0.43
TSPAN9-201ENST00000011898 TOP2BQ02880 1626 aa17.71■□□□□ 0.43
TSPAN9-201ENST00000011898 MRC2Q9UBG0 1479 aa17.7■□□□□ 0.42
TSPAN9-201ENST00000011898 CUX1P39880 1505 aa17.69■□□□□ 0.42
TSPAN9-201ENST00000011898 DNMBPQ6XZF7 1577 aa17.69■□□□□ 0.42
TSPAN9-201ENST00000011898 EEA1Q15075 1411 aa17.68■□□□□ 0.42
TSPAN9-201ENST00000011898 DIEXFQ68CQ4 756 aaKnown RBP17.68■□□□□ 0.42
TSPAN9-201ENST00000011898 TOPBP1Q92547 1522 aa17.66■□□□□ 0.42
TSPAN9-201ENST00000011898 KIF21AQ7Z4S6 1674 aa17.65■□□□□ 0.42
TSPAN9-201ENST00000011898 BIVM-ERCC5R4GMW8 1640 aa17.65■□□□□ 0.42
TSPAN9-201ENST00000011898 FGD5Q6ZNL6 1462 aa17.64■□□□□ 0.41
TSPAN9-201ENST00000011898 ITGAEP38570 1179 aa17.63■□□□□ 0.41
TSPAN9-201ENST00000011898 KIF27Q86VH2 1401 aa17.62■□□□□ 0.41
TSPAN9-201ENST00000011898 SOGA1O94964 1423 aa17.61■□□□□ 0.41
TSPAN9-201ENST00000011898 CSRNP3Q8WYN3 585 aa17.61■□□□□ 0.41
TSPAN9-201ENST00000011898 URB2Q14146 1524 aaKnown RBP17.6■□□□□ 0.41
TSPAN9-201ENST00000011898 CUX2O14529 1486 aa17.57■□□□□ 0.4
TSPAN9-201ENST00000011898 POLA1P09884 1462 aaPredicted RBP17.54■□□□□ 0.4
TSPAN9-201ENST00000011898 RAD54L2Q9Y4B4 1467 aa17.5■□□□□ 0.39
TSPAN9-201ENST00000011898 WDR62O43379 1518 aa17.49■□□□□ 0.39
TSPAN9-201ENST00000011898 IFT140Q96RY7 1462 aa17.47■□□□□ 0.39
TSPAN9-201ENST00000011898 NEUROD1Q13562 356 aa17.45■□□□□ 0.38
TSPAN9-201ENST00000011898 RTL5Q5HYW3 569 aaPredicted RBP17.45■□□□□ 0.38
TSPAN9-201ENST00000011898 ABCA10Q8WWZ4 1543 aa17.44■□□□□ 0.38
TSPAN9-201ENST00000011898 TDRD9Q8NDG6 1382 aaKnown RBP17.43■□□□□ 0.38
TSPAN9-201ENST00000011898 BCANQ96GW7 911 aa17.43■□□□□ 0.38
TSPAN9-201ENST00000011898 RUSC2Q8N2Y8 1516 aa17.43■□□□□ 0.38
TSPAN9-201ENST00000011898 THOC2Q8NI27 1593 aaKnown RBP17.4■□□□□ 0.38
TSPAN9-201ENST00000011898 GOLGA3Q08378 1498 aa17.4■□□□□ 0.38
TSPAN9-201ENST00000011898 GAPVD1Q14C86 1478 aa17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms