RNA–Protein interactions for RNA: ENST00000541025.2

TTR-203, Transcript of transthyretin, humanhuman

TSL 2

Gene TTR, Length 956 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTR-203ENST00000541025 AEBP2Q6ZN18 517 aaPredicted RBP31.49■■■□□ 2.63
TTR-203ENST00000541025 CHIC1Q5VXU3 224 aa30.34■■■□□ 2.45
TTR-203ENST00000541025 SENP3Q9H4L4 574 aaPredicted RBP26.89■■□□□ 1.9
TTR-203ENST00000541025 PHF23Q9BUL5 403 aaPredicted RBP26.59■■□□□ 1.85
TTR-203ENST00000541025 FOXD1Q16676 465 aa24.97■■□□□ 1.59
TTR-203ENST00000541025 PLPPR3Q6T4P5 718 aa24.45■■□□□ 1.5
TTR-203ENST00000541025 PPP6R1Q9UPN7 881 aa23.62■■□□□ 1.37
TTR-203ENST00000541025 ADRA2BP18089 450 aa23.56■■□□□ 1.36
TTR-203ENST00000541025 PIAS4Q8N2W9 510 aaPredicted RBP23.41■■□□□ 1.34
TTR-203ENST00000541025 MSH5O43196 834 aa23.28■■□□□ 1.32
TTR-203ENST00000541025 POTEDQ86YR6 584 aa22.02■■□□□ 1.12
TTR-203ENST00000541025 SCAF1Q9H7N4 1312 aaKnown RBP21.69■■□□□ 1.06
TTR-203ENST00000541025 MAPK8IP2Q13387 824 aaPredicted RBP21.53■■□□□ 1.04
TTR-203ENST00000541025 PPP4R3CPQ6ZMV5 832 aa21.45■■□□□ 1.02
TTR-203ENST00000541025 DMRT2Q9Y5R5 561 aa21.37■■□□□ 1.01
TTR-203ENST00000541025 CNKSR2Q8WXI2 1034 aa20.99■□□□□ 0.95
TTR-203ENST00000541025 NCBP3Q53F19 620 aaKnown RBP20.8■□□□□ 0.92
TTR-203ENST00000541025 HOXD11P31277 338 aaPredicted RBP20.75■□□□□ 0.91
TTR-203ENST00000541025 RNF216Q9NWF9 866 aaPredicted RBP20.71■□□□□ 0.91
TTR-203ENST00000541025 DCAF8L1A6NGE4 600 aa20.43■□□□□ 0.86
TTR-203ENST00000541025 NPM3O75607 178 aaKnown RBP20.41■□□□□ 0.86
TTR-203ENST00000541025 KCNA4P22459 653 aa20.33■□□□□ 0.85
TTR-203ENST00000541025 DNAJC5BQ9UF47 199 aa20.04■□□□□ 0.8
TTR-203ENST00000541025 RNF39Q9H2S5 420 aa19.87■□□□□ 0.77
TTR-203ENST00000541025 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.76■□□□□ 0.75
TTR-203ENST00000541025 CACNB1Q02641 598 aaPredicted RBP19.72■□□□□ 0.75
TTR-203ENST00000541025 C1QBPQ07021 282 aaKnown RBP19.65■□□□□ 0.74
TTR-203ENST00000541025 SLC4A2P04920 1241 aa19.39■□□□□ 0.69
TTR-203ENST00000541025 U3KPZ7 1027 aaPredicted RBP19.35■□□□□ 0.69
TTR-203ENST00000541025 SLC4A1APQ9BWU0 796 aaKnown RBP19.3■□□□□ 0.68
TTR-203ENST00000541025 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.04■□□□□ 0.64
TTR-203ENST00000541025 HNRNPUL2Q1KMD3 747 aaKnown RBP19.04■□□□□ 0.64
TTR-203ENST00000541025 APLP2Q06481 763 aa18.97■□□□□ 0.63
TTR-203ENST00000541025 SPINK5Q9NQ38 1064 aaPredicted RBP18.93■□□□□ 0.62
TTR-203ENST00000541025 CAPN15O75808 1086 aa18.92■□□□□ 0.62
TTR-203ENST00000541025 SAMD1Q6SPF0 538 aaPredicted RBP18.91■□□□□ 0.62
TTR-203ENST00000541025 MYCNP04198 464 aaPredicted RBP18.9■□□□□ 0.62
TTR-203ENST00000541025 FOXD4L1Q9NU39 408 aa18.9■□□□□ 0.62
TTR-203ENST00000541025 DSG3P32926 999 aa18.73■□□□□ 0.59
TTR-203ENST00000541025 ZNF219Q9P2Y4 722 aaPredicted RBP18.73■□□□□ 0.59
TTR-203ENST00000541025 TRHP20396 242 aaPredicted RBP18.7■□□□□ 0.58
TTR-203ENST00000541025 ZBTB22O15209 634 aa18.65■□□□□ 0.58
TTR-203ENST00000541025 ABCB7O75027 752 aa18.46■□□□□ 0.55
TTR-203ENST00000541025 ATF5Q9Y2D1 282 aaPredicted RBP18.36■□□□□ 0.53
TTR-203ENST00000541025 ATXN8OSP0DMR3 200 aa18.35■□□□□ 0.53
TTR-203ENST00000541025 POLA2Q14181 598 aa18.31■□□□□ 0.52
TTR-203ENST00000541025 CSRNP3Q8WYN3 585 aa18.2■□□□□ 0.5
TTR-203ENST00000541025 EHMT2Q96KQ7 1210 aa18.1■□□□□ 0.49
TTR-203ENST00000541025 ZBTB12Q9Y330 459 aaPredicted RBP18.02■□□□□ 0.48
TTR-203ENST00000541025 RBM42Q9BTD8 480 aaKnown RBP17.92■□□□□ 0.46
TTR-203ENST00000541025 FBLN2P98095 1184 aa17.72■□□□□ 0.43
TTR-203ENST00000541025 OSCARQ8IYS5 282 aa17.64■□□□□ 0.41
TTR-203ENST00000541025 AKT1S1Q96B36 256 aa17.58■□□□□ 0.4
TTR-203ENST00000541025 MKRN4PQ13434 485 aaPredicted RBP17.55■□□□□ 0.4
TTR-203ENST00000541025 SPDYE2BA6NHP3 402 aa17.48■□□□□ 0.39
TTR-203ENST00000541025 SPDYE6P0CI01 402 aa17.48■□□□□ 0.39
TTR-203ENST00000541025 SPDYE2Q495Y8 402 aa17.48■□□□□ 0.39
TTR-203ENST00000541025 REM2Q8IYK8 340 aaPredicted RBP17.38■□□□□ 0.37
TTR-203ENST00000541025 POTEHQ6S545 545 aa17.34■□□□□ 0.37
TTR-203ENST00000541025 CHRDL2Q6WN34 429 aa17.32■□□□□ 0.36
TTR-203ENST00000541025 ZNF692Q9BU19 519 aaPredicted RBP17.32■□□□□ 0.36
TTR-203ENST00000541025 SSUH2Q9Y2M2 353 aa17.25■□□□□ 0.35
TTR-203ENST00000541025 PITPNM1O00562 1244 aa17.14■□□□□ 0.33
TTR-203ENST00000541025 SPDYE1Q8NFV5 336 aaPredicted RBP17.08■□□□□ 0.32
TTR-203ENST00000541025 PABPN1Q86U42 306 aaKnown RBP eCLIP17.04■□□□□ 0.32
TTR-203ENST00000541025 FXR2P51116 673 aaKnown RBP eCLIP16.98■□□□□ 0.31
TTR-203ENST00000541025 CLEC11AQ9Y240 323 aa16.98■□□□□ 0.31
TTR-203ENST00000541025 PIP4P2Q8N4L2 257 aa16.97■□□□□ 0.31
TTR-203ENST00000541025 SPDYE4A6NLX3 237 aa16.96■□□□□ 0.31
TTR-203ENST00000541025 PRR29P0C7W0 189 aa16.8■□□□□ 0.28
TTR-203ENST00000541025 STAG3Q9UJ98 1225 aa16.75■□□□□ 0.27
TTR-203ENST00000541025 PRKAR2AP13861 404 aaKnown RBP16.73■□□□□ 0.27
TTR-203ENST00000541025 PROM2Q8N271 834 aa16.62■□□□□ 0.25
TTR-203ENST00000541025 HAX1O00165 279 aa16.6■□□□□ 0.25
TTR-203ENST00000541025 CHADLQ6NUI6 762 aa16.59■□□□□ 0.25
TTR-203ENST00000541025 FKBP8Q14318 412 aa16.47■□□□□ 0.23
TTR-203ENST00000541025 SP7Q8TDD2 431 aaPredicted RBP16.44■□□□□ 0.22
TTR-203ENST00000541025 FARP1Q9Y4F1 1045 aaPredicted RBP16.44■□□□□ 0.22
TTR-203ENST00000541025 CREBZFQ9NS37 354 aa16.43■□□□□ 0.22
TTR-203ENST00000541025 C19orf67A6NJJ6 358 aa16.41■□□□□ 0.22
TTR-203ENST00000541025 EVX2Q03828 476 aa16.36■□□□□ 0.21
TTR-203ENST00000541025 NPM1P06748 294 aaKnown RBP eCLIP16.22■□□□□ 0.19
TTR-203ENST00000541025 CD44P16070 742 aaKnown RBP16.22■□□□□ 0.19
TTR-203ENST00000541025 MNX1P50219 401 aaPredicted RBP16.19■□□□□ 0.18
TTR-203ENST00000541025 MIER1Q8N108 512 aa16.17■□□□□ 0.18
TTR-203ENST00000541025 PLEKHG5O94827 1062 aa16.16■□□□□ 0.18
TTR-203ENST00000541025 FBXO3Q9UK99 471 aa16.13■□□□□ 0.17
TTR-203ENST00000541025 CLCN6P51797 869 aa16.08■□□□□ 0.16
TTR-203ENST00000541025 PLCD3Q8N3E9 789 aa16.08■□□□□ 0.16
TTR-203ENST00000541025 GABBR2O75899 941 aa16.07■□□□□ 0.16
TTR-203ENST00000541025 ZRANB1Q9UGI0 708 aa16.06■□□□□ 0.16
TTR-203ENST00000541025 PAK3O75914 559 aaPredicted RBP16.05■□□□□ 0.16
TTR-203ENST00000541025 ZNF579Q8NAF0 562 aaKnown RBP16■□□□□ 0.15
TTR-203ENST00000541025 ZBTB47Q9UFB7 747 aaPredicted RBP15.99■□□□□ 0.15
TTR-203ENST00000541025 TSPYL2Q9H2G4 693 aaPredicted RBP15.85■□□□□ 0.13
TTR-203ENST00000541025 VASPP50552 380 aaPredicted RBP15.83■□□□□ 0.12
TTR-203ENST00000541025 PHF12Q96QT6 1004 aa15.82■□□□□ 0.12
TTR-203ENST00000541025 RASEFQ8IZ41 740 aa15.8■□□□□ 0.12
TTR-203ENST00000541025 NUBP1P53384 320 aa15.78■□□□□ 0.12
TTR-203ENST00000541025 CCDC61Q9Y6R9 512 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms