RNA–Protein interactions for RNA: ENST00000489378.5

SSBP1-212, Transcript of single stranded DNA binding protein 1, humanhuman

TSL 2

Gene SSBP1, Length 1,434 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP1-212ENST00000489378 AEBP2Q6ZN18 517 aaPredicted RBP27.86■■■□□ 2.05
SSBP1-212ENST00000489378 CHIC1Q5VXU3 224 aa26.39■■□□□ 1.81
SSBP1-212ENST00000489378 NISCHQ9Y2I1 1504 aa23.86■■□□□ 1.41
SSBP1-212ENST00000489378 SENP3Q9H4L4 574 aaPredicted RBP23.65■■□□□ 1.38
SSBP1-212ENST00000489378 PHF23Q9BUL5 403 aaPredicted RBP23.39■■□□□ 1.33
SSBP1-212ENST00000489378 ABCC9O60706 1549 aa22.3■■□□□ 1.16
SSBP1-212ENST00000489378 FOXD1Q16676 465 aa22.12■■□□□ 1.13
SSBP1-212ENST00000489378 CCDC180Q9P1Z9 1646 aa21.64■■□□□ 1.06
SSBP1-212ENST00000489378 DNAJC5BQ9UF47 199 aa21.5■■□□□ 1.03
SSBP1-212ENST00000489378 PLPPR3Q6T4P5 718 aa21.01■□□□□ 0.95
SSBP1-212ENST00000489378 RB1CC1Q8TDY2 1594 aa20.9■□□□□ 0.94
SSBP1-212ENST00000489378 PPP6R1Q9UPN7 881 aa20.71■□□□□ 0.91
SSBP1-212ENST00000489378 PABPN1Q86U42 306 aaKnown RBP eCLIP20.69■□□□□ 0.9
SSBP1-212ENST00000489378 MSH5O43196 834 aa20.61■□□□□ 0.89
SSBP1-212ENST00000489378 NACADO15069 1562 aa20.61■□□□□ 0.89
SSBP1-212ENST00000489378 ADRA2BP18089 450 aa20.6■□□□□ 0.89
SSBP1-212ENST00000489378 PIAS4Q8N2W9 510 aaPredicted RBP20.58■□□□□ 0.88
SSBP1-212ENST00000489378 UNC13AQ9UPW8 1703 aa20.47■□□□□ 0.87
SSBP1-212ENST00000489378 DCAF8L2P0C7V8 631 aa20.42■□□□□ 0.86
SSBP1-212ENST00000489378 BICRAQ9NZM4 1560 aa20.37■□□□□ 0.85
SSBP1-212ENST00000489378 POTEDQ86YR6 584 aa20.22■□□□□ 0.83
SSBP1-212ENST00000489378 CECR2Q9BXF3 1484 aa20.13■□□□□ 0.81
SSBP1-212ENST00000489378 DNAJC5Q9H3Z4 198 aa20.13■□□□□ 0.81
SSBP1-212ENST00000489378 MYO15BQ96JP2 1530 aa20.11■□□□□ 0.81
SSBP1-212ENST00000489378 CC2D2AQ9P2K1 1620 aa20.1■□□□□ 0.81
SSBP1-212ENST00000489378 SHROOM4Q9ULL8 1493 aa19.94■□□□□ 0.78
SSBP1-212ENST00000489378 EIF4G1Q04637 1599 aaKnown RBP19.9■□□□□ 0.78
SSBP1-212ENST00000489378 SCRIBQ14160 1630 aa19.73■□□□□ 0.75
SSBP1-212ENST00000489378 ZCCHC6Q5VYS8 1495 aaKnown RBP19.64■□□□□ 0.74
SSBP1-212ENST00000489378 DCAF1Q9Y4B6 1507 aa19.64■□□□□ 0.73
SSBP1-212ENST00000489378 CUX2O14529 1486 aa19.41■□□□□ 0.7
SSBP1-212ENST00000489378 ERCC6Q03468 1493 aa19.26■□□□□ 0.67
SSBP1-212ENST00000489378 NCAPD3P42695 1498 aa19.05■□□□□ 0.64
SSBP1-212ENST00000489378 TRIM41Q8WV44 630 aa19.01■□□□□ 0.63
SSBP1-212ENST00000489378 NESP48681 1621 aa19■□□□□ 0.63
SSBP1-212ENST00000489378 MAPK8IP2Q13387 824 aaPredicted RBP18.94■□□□□ 0.62
SSBP1-212ENST00000489378 ATAD2BQ9ULI0 1458 aa18.93■□□□□ 0.62
SSBP1-212ENST00000489378 THOC2Q8NI27 1593 aaKnown RBP18.9■□□□□ 0.62
SSBP1-212ENST00000489378 HMGXB3Q12766 1538 aa18.84■□□□□ 0.61
SSBP1-212ENST00000489378 SMARCA2P51531 1590 aa18.8■□□□□ 0.6
SSBP1-212ENST00000489378 DMRT2Q9Y5R5 561 aa18.8■□□□□ 0.6
SSBP1-212ENST00000489378 SMARCA4P51532 1647 aa18.74■□□□□ 0.59
SSBP1-212ENST00000489378 SCAF1Q9H7N4 1312 aaKnown RBP18.72■□□□□ 0.59
SSBP1-212ENST00000489378 KIF21AQ7Z4S6 1674 aa18.71■□□□□ 0.59
SSBP1-212ENST00000489378 LAMC3Q9Y6N6 1575 aa18.69■□□□□ 0.58
SSBP1-212ENST00000489378 BAZ1BQ9UIG0 1483 aaKnown RBP18.69■□□□□ 0.58
SSBP1-212ENST00000489378 PDS5BQ9NTI5 1447 aa18.61■□□□□ 0.57
SSBP1-212ENST00000489378 PEG3Q9GZU2 1588 aa18.55■□□□□ 0.56
SSBP1-212ENST00000489378 BAZ1AQ9NRL2 1556 aaPredicted RBP18.54■□□□□ 0.56
SSBP1-212ENST00000489378 MRC2Q9UBG0 1479 aa18.52■□□□□ 0.55
SSBP1-212ENST00000489378 WDR62O43379 1518 aa18.48■□□□□ 0.55
SSBP1-212ENST00000489378 PPP4R3CPQ6ZMV5 832 aa18.45■□□□□ 0.54
SSBP1-212ENST00000489378 CADPSQ9ULU8 1353 aa18.44■□□□□ 0.54
SSBP1-212ENST00000489378 OSCARQ8IYS5 282 aa18.44■□□□□ 0.54
SSBP1-212ENST00000489378 MROH2BQ7Z745 1585 aa18.41■□□□□ 0.54
SSBP1-212ENST00000489378 CEP164Q9UPV0 1460 aa18.31■□□□□ 0.52
SSBP1-212ENST00000489378 RIMBP3CA6NJZ7 1639 aa18.29■□□□□ 0.52
SSBP1-212ENST00000489378 RIMBP3BA6NNM3 1639 aa18.29■□□□□ 0.52
SSBP1-212ENST00000489378 RIMBP3Q9UFD9 1639 aa18.29■□□□□ 0.52
SSBP1-212ENST00000489378 FANCD2Q9BXW9 1451 aa18.24■□□□□ 0.51
SSBP1-212ENST00000489378 ARHGEF11O15085 1522 aa18.16■□□□□ 0.5
SSBP1-212ENST00000489378 URB2Q14146 1524 aaKnown RBP18.16■□□□□ 0.5
SSBP1-212ENST00000489378 WIZO95785 1651 aa18.15■□□□□ 0.5
SSBP1-212ENST00000489378 HOXD11P31277 338 aaPredicted RBP18.13■□□□□ 0.49
SSBP1-212ENST00000489378 CFTRP13569 1480 aa18.11■□□□□ 0.49
SSBP1-212ENST00000489378 CNKSR2Q8WXI2 1034 aa18.09■□□□□ 0.49
SSBP1-212ENST00000489378 CYB5RLQ6IPT4 315 aa18.08■□□□□ 0.49
SSBP1-212ENST00000489378 TRHP20396 242 aaPredicted RBP18.06■□□□□ 0.48
SSBP1-212ENST00000489378 ZNF608Q9ULD9 1512 aaPredicted RBP18.05■□□□□ 0.48
SSBP1-212ENST00000489378 ARAP1Q96P48 1450 aa17.97■□□□□ 0.47
SSBP1-212ENST00000489378 IFT140Q96RY7 1462 aa17.97■□□□□ 0.47
SSBP1-212ENST00000489378 RNF216Q9NWF9 866 aaPredicted RBP17.95■□□□□ 0.46
SSBP1-212ENST00000489378 DCAF8L1A6NGE4 600 aa17.89■□□□□ 0.45
SSBP1-212ENST00000489378 EIF4G3O43432 1585 aaKnown RBP17.88■□□□□ 0.45
SSBP1-212ENST00000489378 CHD1O14646 1710 aa17.88■□□□□ 0.45
SSBP1-212ENST00000489378 TOP2AP11388 1531 aaKnown RBP17.86■□□□□ 0.45
SSBP1-212ENST00000489378 PRDM2Q13029 1718 aa17.86■□□□□ 0.45
SSBP1-212ENST00000489378 TOPBP1Q92547 1522 aa17.84■□□□□ 0.45
SSBP1-212ENST00000489378 RSF1Q96T23 1441 aaPredicted RBP17.82■□□□□ 0.44
SSBP1-212ENST00000489378 AQRO60306 1485 aaKnown RBP eCLIP17.8■□□□□ 0.444e-9■□□□□ 8.1
SSBP1-212ENST00000489378 FBLN2P98095 1184 aa17.79■□□□□ 0.44
SSBP1-212ENST00000489378 TARBP1Q13395 1621 aaKnown RBP17.73■□□□□ 0.43
SSBP1-212ENST00000489378 ABCC8Q09428 1581 aa17.7■□□□□ 0.42
SSBP1-212ENST00000489378 DNMBPQ6XZF7 1577 aa17.7■□□□□ 0.42
SSBP1-212ENST00000489378 CCDC88BA6NC98 1476 aa17.68■□□□□ 0.42
SSBP1-212ENST00000489378 CACNB1Q02641 598 aaPredicted RBP17.67■□□□□ 0.42
SSBP1-212ENST00000489378 CLASP1Q7Z460 1538 aa17.65■□□□□ 0.42
SSBP1-212ENST00000489378 RNF39Q9H2S5 420 aa17.65■□□□□ 0.42
SSBP1-212ENST00000489378 NCBP3Q53F19 620 aaKnown RBP17.64■□□□□ 0.42
SSBP1-212ENST00000489378 POLA1P09884 1462 aaPredicted RBP17.62■□□□□ 0.41
SSBP1-212ENST00000489378 TDRD9Q8NDG6 1382 aaKnown RBP17.59■□□□□ 0.41
SSBP1-212ENST00000489378 RAD54L2Q9Y4B4 1467 aa17.59■□□□□ 0.41
SSBP1-212ENST00000489378 SNAPC4Q5SXM2 1469 aa17.58■□□□□ 0.4
SSBP1-212ENST00000489378 SYNJ1O43426 1573 aa17.55■□□□□ 0.4
SSBP1-212ENST00000489378 CHMP7Q8WUX9 453 aaPredicted RBP17.54■□□□□ 0.4
SSBP1-212ENST00000489378 SOGA1O94964 1423 aa17.52■□□□□ 0.4
SSBP1-212ENST00000489378 GAPVD1Q14C86 1478 aa17.5■□□□□ 0.39
SSBP1-212ENST00000489378 NPM3O75607 178 aaKnown RBP17.5■□□□□ 0.39
SSBP1-212ENST00000489378 MAGI1Q96QZ7 1491 aaPredicted RBP17.48■□□□□ 0.39
SSBP1-212ENST00000489378 SYNJ2O15056 1496 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms