RNA–Protein interactions for RNA: ENST00000640748.1

ERGIC3-220, Transcript of ERGIC and golgi 3, humanhuman

TSL 5 BASIC

Gene ERGIC3, Length 832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERGIC3-220ENST00000640748 NISCHQ9Y2I1 1504 aa29.21■■■□□ 2.27
ERGIC3-220ENST00000640748 ABCC9O60706 1549 aa26.35■■□□□ 1.81
ERGIC3-220ENST00000640748 CCDC180Q9P1Z9 1646 aa26.21■■□□□ 1.79
ERGIC3-220ENST00000640748 RB1CC1Q8TDY2 1594 aa24.99■■□□□ 1.59
ERGIC3-220ENST00000640748 DNAJC5BQ9UF47 199 aa24.89■■□□□ 1.58
ERGIC3-220ENST00000640748 NACADO15069 1562 aa24.82■■□□□ 1.56
ERGIC3-220ENST00000640748 DCAF8L2P0C7V8 631 aa24.63■■□□□ 1.53
ERGIC3-220ENST00000640748 PABPN1Q86U42 306 aaKnown RBP eCLIP24.53■■□□□ 1.525e-10■■□□□ 14.5
ERGIC3-220ENST00000640748 MYO15BQ96JP2 1530 aa24.48■■□□□ 1.51
ERGIC3-220ENST00000640748 UNC13AQ9UPW8 1703 aa24.44■■□□□ 1.5
ERGIC3-220ENST00000640748 BICRAQ9NZM4 1560 aa24.35■■□□□ 1.49
ERGIC3-220ENST00000640748 ZCCHC6Q5VYS8 1495 aaKnown RBP24.2■■□□□ 1.47
ERGIC3-220ENST00000640748 DCAF1Q9Y4B6 1507 aa24.12■■□□□ 1.45
ERGIC3-220ENST00000640748 SHROOM4Q9ULL8 1493 aa23.95■■□□□ 1.42
ERGIC3-220ENST00000640748 SCRIBQ14160 1630 aa23.89■■□□□ 1.42
ERGIC3-220ENST00000640748 CC2D2AQ9P2K1 1620 aa23.79■■□□□ 1.4
ERGIC3-220ENST00000640748 CECR2Q9BXF3 1484 aa23.75■■□□□ 1.39
ERGIC3-220ENST00000640748 EIF4G1Q04637 1599 aaKnown RBP23.72■■□□□ 1.39
ERGIC3-220ENST00000640748 NCAPD3P42695 1498 aa22.96■■□□□ 1.27
ERGIC3-220ENST00000640748 DNAJC5Q9H3Z4 198 aa22.88■■□□□ 1.25
ERGIC3-220ENST00000640748 ATAD2BQ9ULI0 1458 aa22.87■■□□□ 1.25
ERGIC3-220ENST00000640748 SMARCA4P51532 1647 aa22.79■■□□□ 1.24
ERGIC3-220ENST00000640748 HMGXB3Q12766 1538 aa22.75■■□□□ 1.23
ERGIC3-220ENST00000640748 SMARCA2P51531 1590 aa22.75■■□□□ 1.23
ERGIC3-220ENST00000640748 CUX2O14529 1486 aa22.73■■□□□ 1.23
ERGIC3-220ENST00000640748 ERCC6Q03468 1493 aa22.71■■□□□ 1.23
ERGIC3-220ENST00000640748 BAZ1AQ9NRL2 1556 aaPredicted RBP22.65■■□□□ 1.22
ERGIC3-220ENST00000640748 NESP48681 1621 aa22.64■■□□□ 1.21
ERGIC3-220ENST00000640748 BAZ1BQ9UIG0 1483 aaKnown RBP22.6■■□□□ 1.21
ERGIC3-220ENST00000640748 PEG3Q9GZU2 1588 aa22.6■■□□□ 1.21
ERGIC3-220ENST00000640748 MROH2BQ7Z745 1585 aa22.53■■□□□ 1.2
ERGIC3-220ENST00000640748 THOC2Q8NI27 1593 aaKnown RBP22.41■■□□□ 1.18
ERGIC3-220ENST00000640748 LAMC3Q9Y6N6 1575 aa22.4■■□□□ 1.18
ERGIC3-220ENST00000640748 KIF21AQ7Z4S6 1674 aa22.28■■□□□ 1.16
ERGIC3-220ENST00000640748 PDS5BQ9NTI5 1447 aa22.27■■□□□ 1.16
ERGIC3-220ENST00000640748 CADPSQ9ULU8 1353 aa22.24■■□□□ 1.15
ERGIC3-220ENST00000640748 WIZO95785 1651 aa22.22■■□□□ 1.15
ERGIC3-220ENST00000640748 MRC2Q9UBG0 1479 aa22.11■■□□□ 1.13
ERGIC3-220ENST00000640748 WDR62O43379 1518 aa22.08■■□□□ 1.13
ERGIC3-220ENST00000640748 RSF1Q96T23 1441 aaPredicted RBP22.03■■□□□ 1.12
ERGIC3-220ENST00000640748 FANCD2Q9BXW9 1451 aa21.98■■□□□ 1.11
ERGIC3-220ENST00000640748 CEP164Q9UPV0 1460 aa21.98■■□□□ 1.11
ERGIC3-220ENST00000640748 CFTRP13569 1480 aa21.97■■□□□ 1.11
ERGIC3-220ENST00000640748 TOP2AP11388 1531 aaKnown RBP21.93■■□□□ 1.1
ERGIC3-220ENST00000640748 URB2Q14146 1524 aaKnown RBP21.84■■□□□ 1.09
ERGIC3-220ENST00000640748 TRIM41Q8WV44 630 aa21.77■■□□□ 1.08
ERGIC3-220ENST00000640748 CCDC88BA6NC98 1476 aa21.71■■□□□ 1.07
ERGIC3-220ENST00000640748 OSCARQ8IYS5 282 aa21.67■■□□□ 1.06
ERGIC3-220ENST00000640748 PRDM2Q13029 1718 aa21.66■■□□□ 1.06
ERGIC3-220ENST00000640748 ZNF608Q9ULD9 1512 aaPredicted RBP21.59■■□□□ 1.05
ERGIC3-220ENST00000640748 TOPBP1Q92547 1522 aa21.56■■□□□ 1.04
ERGIC3-220ENST00000640748 IFT140Q96RY7 1462 aa21.56■■□□□ 1.04
ERGIC3-220ENST00000640748 ABCC8Q09428 1581 aa21.45■■□□□ 1.02
ERGIC3-220ENST00000640748 DNMBPQ6XZF7 1577 aa21.44■■□□□ 1.02
ERGIC3-220ENST00000640748 EIF4G3O43432 1585 aaKnown RBP21.41■■□□□ 1.02
ERGIC3-220ENST00000640748 RIMBP3CA6NJZ7 1639 aa21.4■■□□□ 1.02
ERGIC3-220ENST00000640748 RIMBP3BA6NNM3 1639 aa21.4■■□□□ 1.02
ERGIC3-220ENST00000640748 RIMBP3Q9UFD9 1639 aa21.4■■□□□ 1.02
ERGIC3-220ENST00000640748 TARBP1Q13395 1621 aaKnown RBP21.38■■□□□ 1.01
ERGIC3-220ENST00000640748 AQRO60306 1485 aaKnown RBP eCLIP21.36■■□□□ 1.012e-7■■■■□ 24
ERGIC3-220ENST00000640748 ARHGEF11O15085 1522 aa21.34■■□□□ 1.01
ERGIC3-220ENST00000640748 POLA1P09884 1462 aaPredicted RBP21.33■■□□□ 1.01
ERGIC3-220ENST00000640748 RAD54L2Q9Y4B4 1467 aa21.27■■□□□ 1
ERGIC3-220ENST00000640748 CHD1O14646 1710 aa21.25■□□□□ 0.99
ERGIC3-220ENST00000640748 TDRD9Q8NDG6 1382 aaKnown RBP21.22■□□□□ 0.99
ERGIC3-220ENST00000640748 SOGA1O94964 1423 aa21.21■□□□□ 0.99
ERGIC3-220ENST00000640748 CYB5RLQ6IPT4 315 aa21.18■□□□□ 0.98
ERGIC3-220ENST00000640748 FGD5Q6ZNL6 1462 aa21.18■□□□□ 0.98
ERGIC3-220ENST00000640748 FBLN2P98095 1184 aa21.17■□□□□ 0.98
ERGIC3-220ENST00000640748 CUX1P39880 1505 aa21.17■□□□□ 0.98
ERGIC3-220ENST00000640748 ARAP1Q96P48 1450 aa21.15■□□□□ 0.98
ERGIC3-220ENST00000640748 SNAPC4Q5SXM2 1469 aa21.12■□□□□ 0.97
ERGIC3-220ENST00000640748 WDR97A6NE52 1622 aa21.1■□□□□ 0.97
ERGIC3-220ENST00000640748 CLASP1Q7Z460 1538 aa21.06■□□□□ 0.96
ERGIC3-220ENST00000640748 MAGI1Q96QZ7 1491 aaPredicted RBP21.05■□□□□ 0.96
ERGIC3-220ENST00000640748 GRIN2BQ13224 1484 aa21.04■□□□□ 0.96
ERGIC3-220ENST00000640748 CHMP7Q8WUX9 453 aaPredicted RBP21.01■□□□□ 0.95
ERGIC3-220ENST00000640748 SYNJ2O15056 1496 aa20.99■□□□□ 0.95
ERGIC3-220ENST00000640748 SYNJ1O43426 1573 aa20.97■□□□□ 0.95
ERGIC3-220ENST00000640748 GAPVD1Q14C86 1478 aa20.95■□□□□ 0.94
ERGIC3-220ENST00000640748 ABCA10Q8WWZ4 1543 aa20.94■□□□□ 0.94
ERGIC3-220ENST00000640748 TRHP20396 242 aaPredicted RBP20.93■□□□□ 0.94
ERGIC3-220ENST00000640748 SUPT5HO00267 1087 aaKnown RBP20.91■□□□□ 0.94
ERGIC3-220ENST00000640748 PBRM1Q86U86 1689 aa20.91■□□□□ 0.94
ERGIC3-220ENST00000640748 ABCA5Q8WWZ7 1642 aa20.91■□□□□ 0.94
ERGIC3-220ENST00000640748 WRNQ14191 1432 aaPredicted RBP eCLIP20.81■□□□□ 0.92
ERGIC3-220ENST00000640748 GRIN2AQ12879 1464 aa20.78■□□□□ 0.92
ERGIC3-220ENST00000640748 TOP2BQ02880 1626 aa20.76■□□□□ 0.91
ERGIC3-220ENST00000640748 BIVM-ERCC5R4GMW8 1640 aa20.76■□□□□ 0.91
ERGIC3-220ENST00000640748 ADAMTS12P58397 1594 aa20.76■□□□□ 0.91
ERGIC3-220ENST00000640748 NUP160Q12769 1436 aa20.75■□□□□ 0.91
ERGIC3-220ENST00000640748 ERCC6L2Q5T890 1561 aa20.75■□□□□ 0.91
ERGIC3-220ENST00000640748 CEP170Q5SW79 1584 aa20.72■□□□□ 0.91
ERGIC3-220ENST00000640748 FHAD1B1AJZ9 1412 aa20.69■□□□□ 0.9
ERGIC3-220ENST00000640748 ERICH3Q5RHP9 1530 aa20.65■□□□□ 0.9
ERGIC3-220ENST00000640748 SHROOM2Q13796 1616 aa20.64■□□□□ 0.9
ERGIC3-220ENST00000640748 PRG4Q92954 1404 aaPredicted RBP20.53■□□□□ 0.88
ERGIC3-220ENST00000640748 JPH4Q96JJ6 628 aa20.5■□□□□ 0.87
ERGIC3-220ENST00000640748 RUSC2Q8N2Y8 1516 aa20.47■□□□□ 0.87
ERGIC3-220ENST00000640748 IGF1RP08069 1367 aa20.41■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 199.4 ms