Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 HMGN2-202ENST00000460563 1045 ntTSL 513.57□□□□□ -0.241e-9■■■■■ 28.1
DDX55Q8NHQ9 HMGN2-203ENST00000463817 853 ntTSL 210.1□□□□□ -0.791e-9■■■■■ 28.1
DDX55Q8NHQ9 HMGN2-206ENST00000467700 932 ntTSL 28.96□□□□□ -0.981e-9■■■■■ 28.1
DDX55Q8NHQ9 HMGN2-201ENST00000361427 1191 ntAPPRIS P1 TSL 1 (best) BASIC8.47□□□□□ -1.051e-9■■■■■ 28.1
DDX55Q8NHQ9 HMGN2-209ENST00000493418 1496 ntTSL 27.18□□□□□ -1.261e-9■■■■■ 28.1
DDX55Q8NHQ9 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.391e-9■■■■■ 28.1
DDX55Q8NHQ9 PTOV1-208ENST00000597730 327 ntTSL 219.24■□□□□ 0.676e-7■■■■■ 28.1
DDX55Q8NHQ9 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC20.56■□□□□ 0.886e-7■■■■■ 27.9
DDX55Q8NHQ9 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.536e-7■■■■■ 27.9
DDX55Q8NHQ9 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.196e-7■■■■■ 27.9
DDX55Q8NHQ9 FAM234A-201ENST00000301678 2901 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.36e-7■■■■■ 27.9
DDX55Q8NHQ9 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.184e-10■■■■■ 27.9
DDX55Q8NHQ9 CTSL-206ENST00000495822 988 ntTSL 1 (best)18.54■□□□□ 0.567e-8■■■■■ 27.9
DDX55Q8NHQ9 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.377e-8■■■■■ 27.9
DDX55Q8NHQ9 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.337e-8■■■■■ 27.9
DDX55Q8NHQ9 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC34.62■■■■□ 3.133e-10■■■■■ 27.8
DDX55Q8NHQ9 ZC3H18-205ENST00000564341 387 ntTSL 517.32■□□□□ 0.367e-15■■■■■ 27.7
DDX55Q8NHQ9 ZC3H18-206ENST00000565583 1068 ntTSL 216.22■□□□□ 0.197e-15■■■■■ 27.7
DDX55Q8NHQ9 ZC3H18-208ENST00000566496 1949 ntTSL 214.39□□□□□ -0.117e-15■■■■■ 27.7
DDX55Q8NHQ9 SLC52A2-212ENST00000533662 1106 ntTSL 229.65■■■□□ 2.343e-8■■■■■ 27.6
DDX55Q8NHQ9 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC29.45■■■□□ 2.313e-8■■■■■ 27.6
DDX55Q8NHQ9 SLC52A2-213ENST00000534725 935 ntTSL 225.97■■□□□ 1.753e-8■■■■■ 27.6
DDX55Q8NHQ9 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.613e-8■■■■■ 27.6
DDX55Q8NHQ9 SLC52A2-203ENST00000524541 495 ntTSL 425■■□□□ 1.593e-8■■■■■ 27.6
DDX55Q8NHQ9 TMEM250-204ENST00000557985 1981 ntTSL 1 (best)24.73■■□□□ 1.553e-8■■■■■ 27.6
DDX55Q8NHQ9 SLC52A2-206ENST00000526779 881 ntTSL 524.34■■□□□ 1.493e-8■■■■■ 27.6
DDX55Q8NHQ9 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC24.21■■□□□ 1.473e-8■■■■■ 27.6
DDX55Q8NHQ9 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.123e-8■■■■■ 27.6
DDX55Q8NHQ9 SLC52A2-207ENST00000526891 592 ntTSL 421.34■■□□□ 1.013e-8■■■■■ 27.6
DDX55Q8NHQ9 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.973e-8■■■■■ 27.6
DDX55Q8NHQ9 MBOAT7-206ENST00000437868 2033 ntTSL 1 (best)21.08■□□□□ 0.973e-8■■■■■ 27.6
DDX55Q8NHQ9 SLC52A2-204ENST00000526338 655 ntTSL 320.32■□□□□ 0.843e-8■■■■■ 27.6
DDX55Q8NHQ9 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC19.38■□□□□ 0.693e-8■■■■■ 27.6
DDX55Q8NHQ9 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.683e-8■■■■■ 27.6
DDX55Q8NHQ9 DNAJC7-209ENST00000587727 449 ntTSL 317.99■□□□□ 0.473e-8■■■■■ 27.6
DDX55Q8NHQ9 ADD1-223ENST00000538860 507 ntTSL 317.9■□□□□ 0.463e-8■■■■■ 27.6
DDX55Q8NHQ9 MBOAT7-212ENST00000494142 3039 ntTSL 1 (best)17.13■□□□□ 0.333e-8■■■■■ 27.6
DDX55Q8NHQ9 DNAJC7-211ENST00000588814 1719 ntTSL 216.96■□□□□ 0.313e-8■■■■■ 27.6
DDX55Q8NHQ9 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC16.04■□□□□ 0.163e-8■■■■■ 27.6
DDX55Q8NHQ9 ZC3HAV1-201ENST00000242351 7100 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.332e-15■■■■■ 27.6
DDX55Q8NHQ9 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.244e-6■■■■■ 27.6
DDX55Q8NHQ9 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC19.7■□□□□ 0.744e-6■■■■■ 27.6
DDX55Q8NHQ9 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC16.07■□□□□ 0.164e-6■■■■■ 27.6
DDX55Q8NHQ9 SRPRB-201ENST00000466490 2827 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.144e-6■■■■■ 27.6
DDX55Q8NHQ9 SRPRB-202ENST00000466636 917 ntTSL 310.87□□□□□ -0.674e-6■■■■■ 27.6
DDX55Q8NHQ9 SPP1-202ENST00000360804 1196 ntTSL 1 (best) BASIC7.97□□□□□ -1.138e-26■■■■■ 27.6
DDX55Q8NHQ9 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC35.27■■■■□ 3.249e-8■■■■■ 27.5
DDX55Q8NHQ9 ASL-209ENST00000493708 885 ntTSL 331.62■■■□□ 2.652e-7■■■■■ 27.5
DDX55Q8NHQ9 ASL-203ENST00000380839 1765 ntTSL 5 BASIC25.74■■□□□ 1.712e-7■■■■■ 27.5
DDX55Q8NHQ9 STARD3-214ENST00000578577 1511 ntTSL 224.67■■□□□ 1.542e-7■■■■■ 27.5
DDX55Q8NHQ9 ULK3-214ENST00000567472 841 ntTSL 323.75■■□□□ 1.396e-6■■■■■ 27.5
DDX55Q8NHQ9 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC23.3■■□□□ 1.328e-7■■■■■ 27.5
DDX55Q8NHQ9 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC22.59■■□□□ 1.216e-6■■■■■ 27.5
DDX55Q8NHQ9 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.132e-7■■■■■ 27.5
DDX55Q8NHQ9 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC22.09■■□□□ 1.132e-7■■■■■ 27.5
DDX55Q8NHQ9 MAN1B1-216ENST00000550113 774 ntTSL 321.46■■□□□ 1.038e-8■■■■■ 27.5
DDX55Q8NHQ9 ASL-204ENST00000395331 1538 ntTSL 5 BASIC21.39■■□□□ 1.012e-7■■■■■ 27.5
DDX55Q8NHQ9 ZC3H18-212ENST00000569435 694 ntAPPRIS ALT2 TSL 520.57■□□□□ 0.886e-6■■■■■ 27.5
DDX55Q8NHQ9 RAN-205ENST00000477395 762 ntTSL 520.51■□□□□ 0.872e-7■■■■■ 27.5
DDX55Q8NHQ9 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.766e-6■■■■■ 27.5
DDX55Q8NHQ9 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.766e-6■■■■■ 27.5
DDX55Q8NHQ9 MAN1B1-204ENST00000475449 905 ntTSL 319.33■□□□□ 0.688e-8■■■■■ 27.5
DDX55Q8NHQ9 ULK3-212ENST00000566479 2715 ntTSL 1 (best)19.3■□□□□ 0.686e-6■■■■■ 27.5
DDX55Q8NHQ9 GRAMD1A-213ENST00000603669 552 ntTSL 519.27■□□□□ 0.682e-6■■■■■ 27.5
DDX55Q8NHQ9 HDAC10-203ENST00000415993 2375 ntTSL 1 (best)19.25■□□□□ 0.676e-6■■■■■ 27.5
DDX55Q8NHQ9 STXBP2-206ENST00000594221 747 ntTSL 319.15■□□□□ 0.666e-6■■■■■ 27.5
DDX55Q8NHQ9 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC19.04■□□□□ 0.646e-6■■■■■ 27.5
DDX55Q8NHQ9 ASL-206ENST00000464970 640 ntTSL 318.92■□□□□ 0.622e-7■■■■■ 27.5
DDX55Q8NHQ9 ASL-208ENST00000488343 198 ntTSL 318.78■□□□□ 0.62e-7■■■■■ 27.5
DDX55Q8NHQ9 TACC3-208ENST00000484264 551 ntTSL 218.6■□□□□ 0.571e-6■■■■■ 27.5
DDX55Q8NHQ9 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.556e-6■■■■■ 27.5
DDX55Q8NHQ9 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC18.42■□□□□ 0.546e-6■■■■■ 27.5
DDX55Q8NHQ9 HOXB-AS1-202ENST00000502764 578 ntTSL 318.4■□□□□ 0.546e-6■■■■■ 27.5
DDX55Q8NHQ9 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC18.37■□□□□ 0.536e-6■■■■■ 27.5
DDX55Q8NHQ9 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.56e-6■■■■■ 27.5
DDX55Q8NHQ9 SUGP1-209ENST00000588731 2282 ntTSL 1 (best)18.13■□□□□ 0.496e-6■■■■■ 27.5
DDX55Q8NHQ9 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.499e-8■■■■■ 27.5
DDX55Q8NHQ9 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.496e-6■■■■■ 27.5
DDX55Q8NHQ9 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.422e-7■■■■■ 27.5
DDX55Q8NHQ9 ULK3-222ENST00000570276 2951 ntTSL 1 (best)17.63■□□□□ 0.416e-6■■■■■ 27.5
DDX55Q8NHQ9 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC17.62■□□□□ 0.416e-6■■■■■ 27.5
DDX55Q8NHQ9 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.48e-7■■■■■ 27.5
DDX55Q8NHQ9 SUGP1-210ENST00000589144 2066 ntTSL 1 (best)17.56■□□□□ 0.46e-6■■■■■ 27.5
DDX55Q8NHQ9 RAN-210ENST00000541630 1475 ntTSL 2 BASIC17.39■□□□□ 0.379e-8■■■■■ 27.5
DDX55Q8NHQ9 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.376e-6■■■■■ 27.5
DDX55Q8NHQ9 SUGP1-206ENST00000587119 2177 ntTSL 216.8■□□□□ 0.286e-6■■■■■ 27.5
DDX55Q8NHQ9 GRAMD1A-203ENST00000424536 808 ntTSL 2 BASIC16.78■□□□□ 0.282e-6■■■■■ 27.5
DDX55Q8NHQ9 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC16.72■□□□□ 0.278e-7■■■■■ 27.5
DDX55Q8NHQ9 MAN1B1-209ENST00000536349 5048 ntTSL 216.55■□□□□ 0.248e-8■■■■■ 27.5
DDX55Q8NHQ9 MAN1B1-203ENST00000474902 2336 ntTSL 216.29■□□□□ 0.28e-8■■■■■ 27.5
DDX55Q8NHQ9 SUGP1-212ENST00000591007 1377 ntTSL 1 (best)16.15■□□□□ 0.186e-6■■■■■ 27.5
DDX55Q8NHQ9 HOXB-AS1-204ENST00000508688 414 ntTSL 316.14■□□□□ 0.176e-6■■■■■ 27.5
DDX55Q8NHQ9 PRPF39-202ENST00000424478 3174 ntTSL 215.74■□□□□ 0.116e-6■■■■■ 27.5
DDX55Q8NHQ9 URM1-205ENST00000470840 723 ntTSL 215.67■□□□□ 0.16e-6■■■■■ 27.5
DDX55Q8NHQ9 ULK3-202ENST00000561725 2738 ntTSL 515.47■□□□□ 0.076e-6■■■■■ 27.5
DDX55Q8NHQ9 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.058e-8■■■■■ 27.5
DDX55Q8NHQ9 SUGP1-214ENST00000592188 2029 ntTSL 214.49□□□□□ -0.096e-6■■■■■ 27.5
DDX55Q8NHQ9 MAN1B1-213ENST00000544448 2090 ntTSL 1 (best)14.37□□□□□ -0.118e-8■■■■■ 27.5
DDX55Q8NHQ9 GRAMD1A-206ENST00000598073 582 ntTSL 313.9□□□□□ -0.182e-6■■■■■ 27.5
DDX55Q8NHQ9 PRPF39-203ENST00000477626 3507 ntTSL 213.84□□□□□ -0.196e-6■■■■■ 27.5
Retrieved 100 of 15,504 protein–RNA pairs in 297.4 ms